Carg18055 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18055
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine rich protein
Location	Cucurbita_argyrosperma_scaffold_095 : 143934 .. 144691 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCCATCTCAAAAAATCGATCTTTACTACACACAAAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCCCACACACCTCGGTCAAGACCGAAAATGGTGAGTCTCACATGATAAGATTGTATGACACTTAAAATCTTGACCGTAATGTTTATCTTTGTTTAACTTCGAGTTAATTTTAATGATAATGTTGTAGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGCTACCGTCGTGGTCGCTACGACCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCAGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGATGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCATGTTTGGTTTTTAGTGTGTTTCTGTTTTGCAAATCCGATTTCTATCTCGATAACTTGAGTATAGTTCAATCGTTGAAAATATCTATCTAAGTAAGCGGTAATTAGGAGATATTTATTTCTTTGAAGTTCAAATGCTCTACATTTGTGGAAAAACATCATCGATTTGGCAACTTGTAGGTCCATAAAGTCCAAACTCTTCGCCCACTATGATAACAAGAAAAAACC

mRNA sequence

CATCCCATCTCAAAAAATCGATCTTTACTACACACAAAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCCCACACACCTCGGTCAAGACCGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGCTACCGTCGTGGTCGCTACGACCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCAGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGATGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCATGTTTGGTTTTTAGTGTGTTTCTGTTTTGCAAATCCGATTTCTATCTCGATAACTTGAGTATAGTTCAATCGTTGAAAATATCTATCTAAGTAAGCGGTAATTAGGAGATATTTATTTCTTTGAAGTTCAAATGCTCTACATTTGTGGAAAAACATCATCGATTTGGCAACTTGTAGGTCCATAAAGTCCAAACTCTTCGCCCACTATGATAACAAGAAAAAACC

Coding sequence (CDS)

ATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCCCACACACCTCGGTCAAGACCGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGCTACCGTCGTGGTCGCTACGACCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCAGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAA

Protein sequence

MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGYRRGRYDHGGHDGHGHGGYRCRHGWCRYRCCSYAGEVVEGAKP

Homology

[Close]

BLAST of Carg18055 vs. NCBI nr
Match: XP_023529825.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGYRR 60
           MSSKAFVFLGLLFAFVLLISSNVAASDL HTSVKTENVATMETNGVEDAKYGGYDRGYRR
Sbjct: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKTENVATMETNGVEDAKYGGYDRGYRR 60

Query: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 101
           GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP
Sbjct: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 100

[Close]

BLAST of Carg18055 vs. NCBI nr
Match: XP_022989494.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGYRR 60
           MSSKAFVFLGLLFAFVLLISSNVAASDL HTSVK ENVATMETNGVEDAKYGGYDRGYRR
Sbjct: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKYGGYDRGYRR 60

Query: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 101
           GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP
Sbjct: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 100

[Close]

BLAST of Carg18055 vs. NCBI nr
Match: XP_022930747.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGYRR 60
           MSSKAFVFLGLLFAFVLLISSNVAASDL HTS K ENVATMETNGVEDAKYGGYDRGYRR
Sbjct: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKYGGYDRGYRR 60

Query: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 101
           GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP
Sbjct: 61  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 100

[Close]

BLAST of Carg18055 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGY 59
          MSSKAF+FLGLLFA VLLISS VAA DL  TS K EN AT ETNGVEDAKYGGYD GY
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGY 76

[Close]

BLAST of Carg18055 vs. NCBI nr
Match: XP_022952571.1 (glycine-rich protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKYGGYDRGY 59
          MSSKAF+FLGLLFA VLLISS VAA DL  TS K EN AT ETNGVEDAKYGGYD GY
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGY 76

[Close]

BLAST of Carg18055 vs. TrEMBL
Match: tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKY--GGYDRGY 59
          MSSKAFVFLGLL AFVLL+SS VAA DL  TS KT+N AT+ETNGVEDAKY  GGYDRGY
Sbjct: 20 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

[Close]

BLAST of Carg18055 vs. TrEMBL
Match: tr|A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKY--GGYDRGY 59
          MSSKAFVFLGLL AFVLL+SS VAA DL  TS KT+N AT+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

[Close]

BLAST of Carg18055 vs. TrEMBL
Match: tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.7e-14
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKY--GGYDRGY 59
          MSSKAFVFLGL  AFVLL+SS VAA DL  TS KT+N AT+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

[Close]

BLAST of Carg18055 vs. TrEMBL
Match: tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.7e-14
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKY--GGYDRGY 59
          MSSKAFVFLGLL AFVLL+SS VAA DL  TS KT+N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

[Close]

BLAST of Carg18055 vs. TrEMBL
Match: tr|A0A1S3C180|A0A1S3C180_CUCME (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103495657 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLPHTSVKTENVATMETNGVEDAKY-GGYDRGY 59
          MSSKAFVFLGLL AFVLL+SS VAA DL  T  KT+N AT+ETNGVEDAKY GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGY 59

The following BLAST results are available for this feature:

BLAST of Carg18055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529825.1	4.8e-25	99.00	glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989494.1	1.8e-24	98.00	glycine-rich protein DC7.1-like [Cucurbita maxima]	[more]
XP_022930747.1	5.4e-24	97.00	glycine-rich protein DC7.1-like [Cucurbita moschata]	[more]
XP_022952570.1	1.7e-14	81.03	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]	[more]
XP_022952571.1	1.7e-14	81.03	glycine-rich protein-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg18055 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18055 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18055 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6L7\|A0A0A0K6L7_CUCSA	3.3e-14	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1	[more]
tr\|A0P8W6\|A0P8W6_CUCSA	3.3e-14	80.00	Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1	[more]
tr\|A0A0A1IXP4\|A0A0A1IXP4_CUCSA	9.7e-14	78.33	Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1	[more]
tr\|A0A0A0K1B1\|A0A0A0K1B1_CUCSA	9.7e-14	78.33	Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 S...	[more]
tr\|A0A1S3C180\|A0A1S3C180_CUCME	1.3e-13	79.66	cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18055-RA	Carg18055-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..82 e-value: 1.1E-16 score: 61.2
None	No IPR available	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR37389:SF3	FUNGUS-INDUCED PROTEIN	coord: 1..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18055	Cla015651	Watermelon (97103) v1	carwmB1066
Carg18055	Csa7G037590	Cucumber (Chinese Long) v2	carcuB1081
Carg18055	MELO3C018880	Melon (DHL92) v3.5.1	carmeB1033
Carg18055	ClCG02G002460	Watermelon (Charleston Gray)	carwcgB1037
Carg18055	CSPI07G03060	Wild cucumber (PI 183967)	carcpiB1103
Carg18055	Cucsa.181050	Cucumber (Gy14) v1	carcgyB1185
Carg18055	CmaCh19G008850	Cucurbita maxima (Rimu)	carcmaB1474
Carg18055	CmaCh11G012650	Cucurbita maxima (Rimu)	carcmaB1471
Carg18055	CmoCh19G008990	Cucurbita moschata (Rifu)	carcmoB1430
Carg18055	CmoCh11G018560	Cucurbita moschata (Rifu)	carcmoB1428
Carg18055	Lsi11G013830	Bottle gourd (USVL1VR-Ls)	carlsiB974
Carg18055	Cp4.1LG04g03810	Cucurbita pepo (Zucchini)	carcpeB1483
Carg18055	Cp4.1LG15g07050	Cucurbita pepo (Zucchini)	carcpeB1481
Carg18055	CsGy7G002750	Cucumber (Gy14) v2	carcgybB1049
Carg18055	MELO3C018880.2	Melon (DHL92) v3.6.1	carmedB1047
Carg18055	CsaV3_7G002950	Cucumber (Chinese Long) v3	carcucB1114

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18055	Carg04169	Silver-seed gourd	carcarB242

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18055	Cucurbita moschata (Rifu)	carcmoB1431
Carg18055	Cucurbita pepo (Zucchini)	carcpeB1482
Carg18055	Bottle gourd (USVL1VR-Ls)	carlsiB972
Carg18055	Watermelon (97103) v2	carwmbB1124
Carg18055	Wax gourd	carwgoB1253