MELO3C018880.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C018880.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGlycine-rich protein
Locationchr01 : 3632643 .. 3633741 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGCAATTGTCTCAATTCTCATCTCTTTCTCTCTAGCTTTATGTACCTATAAATACCTGTATAAGAATGTAAATCTTTCTCATCCCCATCTCCTAAAATCAATCTCTTACTAAACACACAAAAATGAGTTCTAAAGCCTTTGTTTTCCTTGGCCTTCTTCTCGCCTTCGTTCTTCTCCTCTCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTTCTCCAAGACGGACAACGGTGAGTTCTATGTTATCATAAATTTTAACTCATTTAAGAAGTTTAATTCATAGCAATCACCTATTTTAGGATTTAATATCCTTCTTTTTGCTTGTTATTTTGACATCCAAATGATTATAGAACTAAGCAGGTTGTCAGCAAACTTAGTTCAGGCGCACGTAAGATAATCCTGAACTATTACGAATATTTAAAAAACACTCATGTAAAATGTATAAAATATATATACTTATTATTCAACTTTTTTATATACAGATTTTGAATTCATATAACATTTTCATAGAGTTAAGGATTAATTTTAAAGATAACATTGCAGAGGCCACGGTGGAAACCAATGGTGTAGAGGATGCCAAGTATGGAGGAGGGTACGACAGAGGCTATGGCGGTGGTGGTTACGGTCGTGGTGGCTACGGTCGTGGTGGGTATGGTCGTGGTGGGTATGGTGGTCGTGGAGGCTATGGTGGTGGCCGTGGTGGGTATGGCAGAGGTTGCCGATATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTAGTAGAGGGTGCAAAACCCTAAGACAAGGTGTAGAATGGGATGAAATAATAATAAGGTTTAAAGTTTAATTTGTGTTTGGTTAAATGTGTGAACTGTGGAAGTTTGAGAAGAATAAATACATGGGGAATGGGAGGAGTGGCTTCATCTGTAGTTTTTCTTTTTCCCCATGTTTGGGTTTTAGTATGTTATTGCAAAGATTTGCTTTTTGCAAATTTTTATAATATCAACAAACGTATTTTCATTTCGTGTAACTACGGTTTTATTTCCATAACTTGAACATAAGTTTAATAGTTAACGTATACACACTTTCTTTCGTCTTTAGTTG

mRNA sequence

AATTGCAATTGTCTCAATTCTCATCTCTTTCTCTCTAGCTTTATGTACCTATAAATACCTGTATAAGAATGTAAATCTTTCTCATCCCCATCTCCTAAAATCAATCTCTTACTAAACACACAAAAATGAGTTCTAAAGCCTTTGTTTTCCTTGGCCTTCTTCTCGCCTTCGTTCTTCTCCTCTCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTTCTCCAAGACGGACAACGATAACATTGCAGAGGCCACGGTGGAAACCAATGGTGTAGAGGATGCCAAGTATGGAGGAGGGTACGACAGAGGCTATGGCGGTGGTGGTTACGGTCGTGGTGGCTACGGTCGTGGTGGGTATGGTCGTGGTGGGTATGGTGGTCGTGGAGGCTATGGTGGTGGCCGTGGTGGGTATGGCAGAGGTTGCCGATATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTAGTAGAGGGTGCAAAACCCTAAGACAAGGTGTAGAATGGGATGAAATAATAATAAGGTTTAAAGTTTAATTTGTGTTTGGTTAAATGTGTGAACTGTGGAAGTTTGAGAAGAATAAATACATGGGGAATGGGAGGAGTGGCTTCATCTGTAGTTTTTCTTTTTCCCCATGTTTGGGTTTTAGTATGTTATTGCAAAGATTTGCTTTTTGCAAATTTTTATAATATCAACAAACGTATTTTCATTTCGTGTAACTACGGTTTTATTTCCATAACTTGAACATAAGTTTAATAGTTAACGTATACACACTTTCTTTCGTCTTTAGTTG

Coding sequence (CDS)

ATGAGTTCTAAAGCCTTTGTTTTCCTTGGCCTTCTTCTCGCCTTCGTTCTTCTCCTCTCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTTCTCCAAGACGGACAACGATAACATTGCAGAGGCCACGGTGGAAACCAATGGTGTAGAGGATGCCAAGTATGGAGGAGGGTACGACAGAGGCTATGGCGGTGGTGGTTACGGTCGTGGTGGCTACGGTCGTGGTGGGTATGGTCGTGGTGGGTATGGTGGTCGTGGAGGCTATGGTGGTGGCCGTGGTGGGTATGGCAGAGGTTGCCGATATGGTCGATGCGGGTACAGGTGCTGCAGCTACGCTGGTGAAGTAGTAGAGGGTGCAAAACCCTAA

Protein sequence

MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYGGGYDRGYGGGGYGRGGYGRGGYGRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVVEGAKP
BLAST of MELO3C018880.2 vs. NCBI nr
Match: XP_008455506.1 (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 6.8e-21
Identity = 118/122 (96.72%), Postives = 118/122 (96.72%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYGGGYD 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDN    EATVETNGVEDAKYGGGYD
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDN----EATVETNGVEDAKYGGGYD 60

Query: 61  RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA 120
           RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA
Sbjct: 61  RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA 118

Query: 121 KP 123
           KP
Sbjct: 121 KP 118

BLAST of MELO3C018880.2 vs. NCBI nr
Match: NP_001267708.1 (glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 110/123 (89.43%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 60

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 61  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 119

Query: 121 AKP 123
           AKP
Sbjct: 121 AKP 119

BLAST of MELO3C018880.2 vs. NCBI nr
Match: KGN43456.1 (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 110/123 (89.43%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 79

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 80  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 138

Query: 121 AKP 123
           AKP
Sbjct: 140 AKP 138

BLAST of MELO3C018880.2 vs. NCBI nr
Match: KGN43455.1 (Cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
          MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    E TVETNGVEDAKYG GGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EVTVETNGVEDAKYGRGGY 60

Query: 61 DRGY 64
          DRGY
Sbjct: 61 DRGY 60

BLAST of MELO3C018880.2 vs. NCBI nr
Match: CEG62450.1 (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 109/123 (88.62%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGL LAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 60

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 61  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 119

Query: 121 AKP 123
           AKP
Sbjct: 121 AKP 119

BLAST of MELO3C018880.2 vs. Swiss-Prot
Match: sp|Q09134|GRPA_MEDSF (Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subsp. falcata OX=3878 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.7e-04
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 16 VLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYGGGYD 61
          VLL+SSEV+ARDL ET S    D   E   +TN V DAKYGGGY+
Sbjct: 2  VLLISSEVSARDLTETTS----DAKKEVVEKTNEVNDAKYGGGYN 42

BLAST of MELO3C018880.2 vs. TrEMBL
Match: tr|A0A1S3C180|A0A1S3C180_CUCME (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103495657 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.5e-21
Identity = 118/122 (96.72%), Postives = 118/122 (96.72%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYGGGYD 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDN    EATVETNGVEDAKYGGGYD
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDN----EATVETNGVEDAKYGGGYD 60

Query: 61  RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA 120
           RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA
Sbjct: 61  RGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGA 118

Query: 121 KP 123
           KP
Sbjct: 121 KP 118

BLAST of MELO3C018880.2 vs. TrEMBL
Match: tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 110/123 (89.43%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 79

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 80  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 138

Query: 121 AKP 123
           AKP
Sbjct: 140 AKP 138

BLAST of MELO3C018880.2 vs. TrEMBL
Match: tr|A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 110/123 (89.43%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 60

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 61  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 119

Query: 121 AKP 123
           AKP
Sbjct: 121 AKP 119

BLAST of MELO3C018880.2 vs. TrEMBL
Match: tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.7e-17
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
          MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDN    E TVETNGVEDAKYG GGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDN----EVTVETNGVEDAKYGRGGY 60

Query: 61 DRGY 64
          DRGY
Sbjct: 61 DRGY 60

BLAST of MELO3C018880.2 vs. TrEMBL
Match: tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 109/123 (88.62%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNDNIAEATVETNGVEDAKYG-GGY 60
           MSSKAFVFLGL LAFVLLLSSEVAARDLAET SKTDN    EATVETNGVEDAKYG GGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDN----EATVETNGVEDAKYGRGGY 60

Query: 61  DRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEG 120
           DRGY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEG
Sbjct: 61  DRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEG 119

Query: 121 AKP 123
           AKP
Sbjct: 121 AKP 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008455506.16.8e-2196.72PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo][more]
NP_001267708.15.9e-1789.43glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glyc... [more]
KGN43456.15.9e-1789.43hypothetical protein Csa_7G037600 [Cucumis sativus][more]
KGN43455.11.3e-1689.06Cell wall glycine-rich protein [Cucumis sativus][more]
CEG62450.11.7e-1688.62Glycine rich protein [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
sp|Q09134|GRPA_MEDSF6.7e-0460.00Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subs... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C180|A0A1S3C180_CUCME4.5e-2196.72cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA3.9e-1789.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1[more]
tr|A0P8W6|A0P8W6_CUCSA3.9e-1789.43Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1[more]
tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA8.7e-1789.06Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 S... [more]
tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA1.1e-1688.62Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0006952 defense response
biological_process GO:0009607 response to biotic stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018880.2.1MELO3C018880.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..102
e-value: 2.8E-13
score: 50.3
NoneNo IPR availablePANTHERPTHR37372FAMILY NOT NAMEDcoord: 1..109

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018880.2Carg18055Silver-seed gourdcarmedB1047
MELO3C018880.2CsaV3_7G002950Cucumber (Chinese Long) v3cucmedB536
The following gene(s) are paralogous to this gene:

None