CmaCh11G009620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G009620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaA07g04970D protein
Location	Cma_Chr11 : 5091317 .. 5092092 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGTTAGTGTCAGATTGAAGGAGGAACGTGACACTAATTTTGTGGACATGAGATATAGAGAGATTAATATAAACTCAATATCAGTTTGTGGGTGTGTTCTCCAATGATCTCCAAAAATTACTTCCAACACGGGAGGTTCAATAAATATCGAGCTTGAACAAGAAACAACTCATATTTACGAGACATCGTACTCTACTACTCATATCTCCCAAACTATGAACAAGAAATAACATATGAATTGTCAAAATTTTCTTATGGGAAAAATTACTTCAAATACAATATAACATCCTCTACGACTCATGTCTCCCTAACTACTTTCTACCGATTTTAACGGTCAACTACTTTTAGGCCCACCAATTTTAGGACATCTTACCCTCTTTTTTAAGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAGTAAGGAAGGGGGCAAAAGTTGAGATTGCAAAGAAAGAAAATGAAGTCTTTACCAATATGTTTAGCTTTAATTACGATGCTGATGACAAGCCAACAAGTGATGACGAACCAAGAAGCAATCTCAACGATAAAATATCTTAAAATTTCAGAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

mRNA sequence

ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

Coding sequence (CDS)

ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

Protein sequence

MLAIGVRDWSRVLHKKHSLDQRGLGIVSSINTREKKQRKCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCRGGET

Homology

[Close]

BLAST of CmaCh11G009620 vs. Swiss-Prot
Match: RLF11_ARATH (Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPTPVNEYSRGCSKIHRCR 70

[Close]

BLAST of CmaCh11G009620 vs. Swiss-Prot
Match: RLF12_ARATH (Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGTEQKNPTPVNEYSRGCSKIHRCR 70

[Close]

BLAST of CmaCh11G009620 vs. TAIR10
Match: AT2G19030.1 (AT2G19030.1 ralf-like 11)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPTPVNEYSRGCSKIHRCR 70

[Close]

BLAST of CmaCh11G009620 vs. TAIR10
Match: AT2G19040.1 (AT2G19040.1 RALF-like 12)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGTEQKNPTPVNEYSRGCSKIHRCR 70

[Close]

BLAST of CmaCh11G009620 vs. TAIR10
Match: AT2G19045.1 (AT2G19045.1 RALF-like 13)

HSP 1 Score: 50.1 bits (118), Expect = 7.6e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPNPVNEYSRGCSKIHRCR 70

[Close]

BLAST of CmaCh11G009620 vs. TAIR10
Match: AT2G19020.1 (AT2G19020.1 ralf-like 10)

HSP 1 Score: 46.6 bits (109), Expect = 8.4e-06
Identity = 20/38 (52.63%), Postives = 22/38 (57.89%), Query Frame = 1


Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C     +  NP PAN Y RGCS I RC+
Sbjct: 34 KCAGPNPPPGCYPPGAQQKNPTPANEYRRGCSKITRCK 71

The following BLAST results are available for this feature:

BLAST of CmaCh11G009620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF11_ARATH	6.0e-06	55.26	Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1	[more]
RLF12_ARATH	6.0e-06	55.26	Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1	[more]

BLAST of CmaCh11G009620 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh11G009620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19030.1	3.4e-07	55.26	ralf-like 11	[more]
AT2G19040.1	3.4e-07	55.26	RALF-like 12	[more]
AT2G19045.1	7.6e-07	55.26	RALF-like 13	[more]
AT2G19020.1	8.4e-06	52.63	ralf-like 10	[more]

BLAST of CmaCh11G009620 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009620.1	CmaCh11G009620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 38..77 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G009620	CmoCh11G009850	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G009620	Cp4.1LG04g02100	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G009620	Carg16467	Silver-seed gourd	carcmaB1252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G009620	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G009620	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G009620	Melon (DHL92) v3.6.1	cmamedB114
CmaCh11G009620	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G009620	Wax gourd	cmawgoB0169
CmaCh11G009620	Cucurbita maxima (Rimu)	cmacmaB082
CmaCh11G009620	Cucumber (Gy14) v1	cgycmaB1100
CmaCh11G009620	Cucurbita moschata (Rifu)	cmacmoB109
CmaCh11G009620	Wild cucumber (PI 183967)	cmacpiB084
CmaCh11G009620	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G009620	Melon (DHL92) v3.5.1	cmameB109
CmaCh11G009620	Melon (DHL92) v3.5.1	cmameB107