Cp4.1LG04g02100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g02100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionralf-like 9
LocationCp4.1LG04 : 58590 .. 58883 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAAAGAAAAAGAGAAGTAAGGAGGGACAAAAGTTGAGATTGCAAGGAAAGAAAATGAAGTCGTTACCAATATGTTTAGCTTTAACTACGATGCTGATGATAAGCCGACAAGTGATGACGAACCAAGAAGCAACATCAAAGATAAACTATCTTAAAATTTCAGAATGTCATCATCCTAACCCACCTGCACATTGTTCTTTATCTCGAGCTAGGGGCTATGAACATGTTCCTGCTAATCCCTATGATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAAGTTAA

mRNA sequence

ATGGGGGAAAAGAAAAAGAGAAGTAAGGAGGGACAAAAGTTGAGATTGCAAGGAAAGAAAATGAAGTCGTTACCAATATGTTTAGCTTTAACTACGATGCTGATGATAAGCCGACAAGTGATGACGAACCAAGAAGCAACATCAAAGATAAACTATCTTAAAATTTCAGAATGTCATCATCCTAACCCACCTGCACATTGTTCTTTATCTCGAGCTAGGGGCTATGAACATGTTCCTGCTAATCCCTATGATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAAGTTAA

Coding sequence (CDS)

ATGGGGGAAAAGAAAAAGAGAAGTAAGGAGGGACAAAAGTTGAGATTGCAAGGAAAGAAAATGAAGTCGTTACCAATATGTTTAGCTTTAACTACGATGCTGATGATAAGCCGACAAGTGATGACGAACCAAGAAGCAACATCAAAGATAAACTATCTTAAAATTTCAGAATGTCATCATCCTAACCCACCTGCACATTGTTCTTTATCTCGAGCTAGGGGCTATGAACATGTTCCTGCTAATCCCTATGATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAAGTTAA

Protein sequence

MGEKKKRSKEGQKLRLQGKKMKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPANPYDRGCSAIHRCRGGS
Homology
[Close]
BLAST of Cp4.1LG04g02100 vs. Swiss-Prot
Match: RLF11_ARATH (Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPA 80
          MK+  ICL +    +I+  V    E+ + I Y  I++C  PNPP  C+   A      P 
Sbjct: 1  MKAWLICLLVICAAVIAEPV----ESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPV 60

Query: 81 NPYDRGCSAIHRCR 95
          N Y RGCS IHRCR
Sbjct: 61 NEYSRGCSKIHRCR 70

[Close]
BLAST of Cp4.1LG04g02100 vs. Swiss-Prot
Match: RLF13_ARATH (Protein RALF-like 13 OS=Arabidopsis thaliana GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.3e-06
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPA 80
          MK+  ICL +    +I+  V    E+ + I Y  I++C  PNPP  C+   A      P 
Sbjct: 1  MKAWVICLLVICAAVIAEPV----ESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPV 60

Query: 81 NPYDRGCSAIHRCR 95
          N Y RGCS IHRCR
Sbjct: 61 NEYSRGCSKIHRCR 70

[Close]
BLAST of Cp4.1LG04g02100 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKI-SECHHPNPPAHCSLSRARGYEHVP 80
          MKS  IC+   +ML++S      QE  ++ N+LK  + C  P+PP  CS   ++  +H P
Sbjct: 1  MKSWLICVVFISMLVMS------QEVGAQTNHLKFPNPCDLPSPPPSCS---SKVKDHAP 60

Query: 81 ANPYDRGCSAIHRCRG 96
           NPYDRGCSAIHRCRG
Sbjct: 61 TNPYDRGCSAIHRCRG 67

[Close]
BLAST of Cp4.1LG04g02100 vs. TAIR10
Match: AT2G19030.1 (AT2G19030.1 ralf-like 11)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPA 80
          MK+  ICL +    +I+  V    E+ + I Y  I++C  PNPP  C+   A      P 
Sbjct: 1  MKAWLICLLVICAAVIAEPV----ESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPV 60

Query: 81 NPYDRGCSAIHRCR 95
          N Y RGCS IHRCR
Sbjct: 61 NEYSRGCSKIHRCR 70

[Close]
BLAST of Cp4.1LG04g02100 vs. TAIR10
Match: AT2G19045.1 (AT2G19045.1 RALF-like 13)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPA 80
          MK+  ICL +    +I+  V    E+ + I Y  I++C  PNPP  C+   A      P 
Sbjct: 1  MKAWVICLLVICAAVIAEPV----ESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPV 60

Query: 81 NPYDRGCSAIHRCR 95
          N Y RGCS IHRCR
Sbjct: 61 NEYSRGCSKIHRCR 70

[Close]
BLAST of Cp4.1LG04g02100 vs. TAIR10
Match: AT2G19040.1 (AT2G19040.1 RALF-like 12)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKISECHHPNPPAHCSLSRARGYEHVPA 80
          MK+  I L +   ++I+  V    E+ + I Y  I++C  PNPP  C+          P 
Sbjct: 1  MKAWVIGLLVICAVVIAEPV----ESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPV 60

Query: 81 NPYDRGCSAIHRCR 95
          N Y RGCS IHRCR
Sbjct: 61 NEYSRGCSKIHRCR 70

[Close]
BLAST of Cp4.1LG04g02100 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 21 MKSLPICLALTTMLMISRQVMTNQEATSKINYLKI-SECHHPNPPAHCSLSRARGYEHVP 80
          MKS  IC+   +ML++S      QE  ++ N+LK  + C  P+PP  CS   ++  +H P
Sbjct: 1  MKSWLICVVFISMLVMS------QEVGAQTNHLKFPNPCDLPSPPPSCS---SKVKDHAP 60

Query: 81 ANPYDRGCSAIHRCRG 96
           NPYDRGCSAIHRCRG
Sbjct: 61 TNPYDRGCSAIHRCRG 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g02100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF11_ARATH2.5e-0640.54Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1[more]
RLF13_ARATH4.3e-0640.54Protein RALF-like 13 OS=Arabidopsis thaliana GN=RALFL13 PE=3 SV=1[more]
BLAST of Cp4.1LG04g02100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0X3_CUCSA7.1e-0847.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
BLAST of Cp4.1LG04g02100 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19030.11.4e-0740.54 ralf-like 11[more]
AT2G19045.12.4e-0740.54 RALF-like 13[more]
AT2G19040.14.5e-0637.84 RALF-like 12[more]
BLAST of Cp4.1LG04g02100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211681|gb|KGN66777.1|1.0e-0747.37hypothetical protein Csa_1G690160 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02100.1Cp4.1LG04g02100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 35..95
score: 6.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g02100CmaCh11G009620Cucurbita maxima (Rimu)cmacpeB147
Cp4.1LG04g02100CmoCh11G009850Cucurbita moschata (Rifu)cmocpeB127
Cp4.1LG04g02100Carg16467Silver-seed gourdcarcpeB1261
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g02100Cucumber (Gy14) v1cgycpeB1051
Cp4.1LG04g02100Cucurbita maxima (Rimu)cmacpeB095
Cp4.1LG04g02100Cucurbita moschata (Rifu)cmocpeB071
Cp4.1LG04g02100Cucumber (Chinese Long) v2cpecuB639
Cp4.1LG04g02100Bottle gourd (USVL1VR-Ls)cpelsiB559
Cp4.1LG04g02100Cucumber (Gy14) v2cgybcpeB112
Cp4.1LG04g02100Melon (DHL92) v3.6.1cpemedB729
Cp4.1LG04g02100Cucumber (Chinese Long) v3cpecucB0799
Cp4.1LG04g02100Wax gourdcpewgoB0899