CmaCh11G009620.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G009620.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBnaA07g04970D protein
LocationCma_Chr11 : 5091317 .. 5092092 (+)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGTTAGTGTCAGATTGAAGGAGGAACGTGACACTAATTTTGTGGACATGAGATATAGAGAGATTAATATAAACTCAATATCAGTTTGTGGGTGTGTTCTCCAATGATCTCCAAAAATTACTTCCAACACGGGAGGTTCAATAAATATCGAGCTTGAACAAGAAACAACTCATATTTACGAGACATCGTACTCTACTACTCATATCTCCCAAACTATGAACAAGAAATAACATATGAATTGTCAAAATTTTCTTATGGGAAAAATTACTTCAAATACAATATAACATCCTCTACGACTCATGTCTCCCTAACTACTTTCTACCGATTTTAACGGTCAACTACTTTTAGGCCCACCAATTTTAGGACATCTTACCCTCTTTTTTAAGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAGTAAGGAAGGGGGCAAAAGTTGAGATTGCAAAGAAAGAAAATGAAGTCTTTACCAATATGTTTAGCTTTAATTACGATGCTGATGACAAGCCAACAAGTGATGACGAACCAAGAAGCAATCTCAACGATAAAATATCTTAAAATTTCAGAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

mRNA sequence

ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

Coding sequence (CDS)

ATGTTGGCAATTGGAGTTCGAGATTGGTCAAGAGTTCTTCACAAGAAGCACTCGTTGGATCAAAGAGGACTAGGGATTGTTTCATCTATAAATACGAGGGAAAAGAAACAGAGAAAATGTCACCATCCTAATCCACCTGCACATTGTTCTTTATCTCGAGTTAGGGACTATAATCCTGTTCCTGCTAATCCCTATAATCGAGGATGCTCTGCTATCCATCGTTGTCGAGGAGGAGAAACTTAA

Protein sequence

MLAIGVRDWSRVLHKKHSLDQRGLGIVSSINTREKKQRKCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCRGGET
Homology
[Close]
BLAST of CmaCh11G009620.1 vs. Swiss-Prot
Match: RLF11_ARATH (Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPTPVNEYSRGCSKIHRCR 70

[Close]
BLAST of CmaCh11G009620.1 vs. Swiss-Prot
Match: RLF12_ARATH (Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGTEQKNPTPVNEYSRGCSKIHRCR 70

[Close]
BLAST of CmaCh11G009620.1 vs. TAIR10
Match: AT2G19030.1 (AT2G19030.1 ralf-like 11)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPTPVNEYSRGCSKIHRCR 70

[Close]
BLAST of CmaCh11G009620.1 vs. TAIR10
Match: AT2G19040.1 (AT2G19040.1 RALF-like 12)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGTEQKNPTPVNEYSRGCSKIHRCR 70

[Close]
BLAST of CmaCh11G009620.1 vs. TAIR10
Match: AT2G19045.1 (AT2G19045.1 RALF-like 13)

HSP 1 Score: 50.1 bits (118), Expect = 7.6e-07
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C+       NP P N Y+RGCS IHRCR
Sbjct: 33 KCAGPNPPPGCNPPGAEQKNPNPVNEYSRGCSKIHRCR 70

[Close]
BLAST of CmaCh11G009620.1 vs. TAIR10
Match: AT2G19020.1 (AT2G19020.1 ralf-like 10)

HSP 1 Score: 46.6 bits (109), Expect = 8.4e-06
Identity = 20/38 (52.63%), Postives = 22/38 (57.89%), Query Frame = 1 

Query: 39 KCHHPNPPAHCSLSRVRDYNPVPANPYNRGCSAIHRCR 77
          KC  PNPP  C     +  NP PAN Y RGCS I RC+
Sbjct: 34 KCAGPNPPPGCYPPGAQQKNPTPANEYRRGCSKITRCK 71

The following BLAST results are available for this feature:
BLAST of CmaCh11G009620.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF11_ARATH6.0e-0655.26Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1[more]
RLF12_ARATH6.0e-0655.26Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1[more]
BLAST of CmaCh11G009620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh11G009620.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19030.13.4e-0755.26 ralf-like 11[more]
AT2G19040.13.4e-0755.26 RALF-like 12[more]
AT2G19045.17.6e-0755.26 RALF-like 13[more]
AT2G19020.18.4e-0652.63 ralf-like 10[more]
BLAST of CmaCh11G009620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh11G009620CmaCh11G009620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh11G009620.1CmaCh11G009620.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G009620.1.exon.1CmaCh11G009620.1.exon.1exon
CmaCh11G009620.1.exon.2CmaCh11G009620.1.exon.2exon
CmaCh11G009620.1.exon.3CmaCh11G009620.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G009620.1.CDS.1CmaCh11G009620.1.CDS.1CDS
CmaCh11G009620.1.CDS.2CmaCh11G009620.1.CDS.2CDS
CmaCh11G009620.1.CDS.3CmaCh11G009620.1.CDS.3CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 38..77
score: 6.