CmaCh11G007890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G007890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pheophorbide A oxygenase, putative
Location	Cma_Chr11 : 3859448 .. 3861914 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTAATTGTTCATAAAATTTGGTGGACAGTTGATGGCCACAAAAATGATAAAATCCAGACGCTTCTTCTTCTTTCTAGAAATCATGCAACAATCTTAAACGCATCTATGTAAGCTGTTTCTTCATCCATTCGGAATCCAAGGTTTTGCCATGGACGTGCTGAAATTCTCTTCTGTTCCACTCCACTTCACTGCCAAGTTGAACAAATCCCGATTTCTGAAGCAGTGTTTGCAGGTTAATCTATTGCCCTCGTTGCCTTCTTCATTGATTAGCCGGCATAGTCGAAGATTCAATCTCCGTGCGAGCGTATCTTCCACCATTTCAACGGAGGAATTTGAATATGCGAGTCCGTTTGAGGATGAGGCCGAGAATGAACGGCGAGAGGATGAGAGGTTTGATTGGTATGCGCAATGGTACCCGATTATGCCGATTTGTGACCTTGACAAGAGGGTGCCGCATGGGAAAACGGTAATGGGGATTGATGTCGTGGTGTGGTGGGATAAGAATGAGAGTGCGTGGAAGGTGTTTGAAGATTCTTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATCAATGGGGGAGATTGCAATGTGTTTATCATGGCTGGTGTTTTAACGGATCTGGTGATTGTAAGTTCATCCCTCAGGCTCCCCCTGACGGCCCTCCGGTAAGGATTCTACCATCTTCCCCTGGTGAACTTATTGCTCTGCTTCAATTAGAGATTTAACTTCATGGTTGCATCGAATTCAACTTCGAAAGAGTTTTGATTACATATTTGAATCTGGATTGTGATTCTGTTTATTCGCCAAGCATTAGTTGATTTGACATGATTTAATGAATAAACGAGAATGTCAATATAACGATTCACAAATTAACTTTGATTGCCATAAACAAAAGAGATTTCTTATGCTGCTTGCTAGTTGCTGGCACTTTGTTTTGGTGTTAATGGTAGAGATGACACAAAATCAAACAGTTCAAAGTGGAGAACCCTGTTAAAGTTAGGCATAGCACTAAATTGTTAATTTACCCATTATTAACATATTTCTACCAAACTGAAATCAACATTACTGAACCTTCTCGTCTCGTCATTTTTTGTTTCATGATAATATAGTTCAGAAGGAATTTGGAGAAAATGTGCTTAAACTGCTTATTAAGAACATCAGTTCATTAATGACAAATCAGAAGAATGTAGTTTTTCGTATAACACAACTTTTCTTGAATGCTGAAAAACTTACTAAATGATTTACCTTAGATTCAGAATTTGATTTTACTTCCTATTTCTGTCGTTGGTGCATATTGTTCCGGTGGTGAATATTGTTCAGAATCTGACATATTGCCGTAGAAAATGAAGTCGTATTCAGAAGTTAACAAGAGTCATATGCTAAGATAGTTAAAAGATTAAGTATTGTGGTTATATTAGTCAAACTTTAAATAACTGGACAAGAGTCTGCTAATTTTCTTCCTTCGATTTGCAGGTTCACACGTCCAAAAGGGCATGTGTTGCTGTTTATCCTAGCATTGTGCAGAATGACATTTTATGGTTTTGGCCAAATAGTGATCCCCAGTACAAGGATATTTTGGTGAAGAAAAAACCCCCTTACATTCCTGAATTGGACGATCCGTCATATACTAAGTTAACTAGTAACAGAGATCTTCCATATGGGTATGGAGAGCCTGATTGTCACTTTTTACTCATCTGCTTTCTATTTGATCTTGGCCAGTCTAGTTATAGAGGAATTATGAAGGAAGCTATCACGAATGTAGTTGAACTGTGCTCTTTTTCTCATTTTCGTTTTATCTTTTTCCACCGAAAGAAAATCGAATCATTGATTTTAAGCTGAGGAAATTCTATTTAACAAAAAGATCATGACCGTATTCTCGAGAAACGGTCTAATTCATAGCAAAAGACTGATTACTAGCTCTTCATAGTAGAACCAACGATGGTGAACTGGATAAGTTAACAATAAGATTGTTACTTACTGTTAGGTGGATCTCAATGTAGAAGATTGTATTCTTCTTTCTTTTATCAAATAACTTAGGAGCCATACGAGATGAAAGTCTCATACACGGTTTTGAATGAGAGAAAGAAGTGAGGAATCCTCCTTTCGACTCTGACTCTCCCACTCAAGTAGTTGCTTTTCTTTTTGTTACTTCTAAAGTAGTTGTTTCAGTTTCAACCACTCGAATTTTCGATATTCCTTTTTATTTCTCACCAAATGAATGACATGATTACTAGCTAATTCATAGTGGAACCAAAGAGGGTGAACTGGATAGGTTAACAATAACATTGATAAAATGAAAGGAGTTCGAGTGGGTAAATAAGACCTCTCTGTTACTCAACAACCCTCCTTCTCTTTACACTTTCAGGTATGAGATTTTGACTGAGAATCTTATGGACCCAGCTCATGTCCCGTATGCCCATTATGGGATAATGGGAATGCGCCAGCCCAATAA

mRNA sequence

ATGACAGGTTTTGCCATGGACGTGCTGAAATTCTCTTCTGTTCCACTCCACTTCACTGCCAAGTTGAACAAATCCCGATTTCTGAAGCAGTGTTTGCAGGTTAATCTATTGCCCTCGTTGCCTTCTTCATTGATTAGCCGGCATAGTCGAAGATTCAATCTCCGTGCGAGCGTATCTTCCACCATTTCAACGGAGGAATTTGAATATGCGAGTCCGTTTGAGGATGAGGCCGAGAATGAACGGCGAGAGGATGAGAGGTTTGATTGGTATGCGCAATGGTACCCGATTATGCCGATTTGTGACCTTGACAAGAGGGTGCCGCATGGGAAAACGGTAATGGGGATTGATGTCGTGGTGTGGTGGGATAAGAATGAGAGTGCGTGGAAGGTGTTTGAAGATTCTTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATCAATGGGGGAGATTGCAATGTGTTTATCATGGCTGGTGTTTTAACGGATCTGGTGATTGTAAGTTCATCCCTCAGGCTCCCCCTGACGGCCCTCCGGTTCACACGTCCAAAAGGGCATGTGTTGCTGTTTATCCTAGCATTGTGCAGAATGACATTTTATGGTTTTGGCCAAATAGTGATCCCCAGTACAAGGATATTTTGGTGAAGAAAAAACCCCCTTACATTCCTGAATTGGACGATCCGTCATATACTAAGTTAACTAGTAACAGAGATCTTCCATATGGCTCATGTCCCGTATGCCCATTATGGGATAATGGGAATGCGCCAGCCCAATAA

Coding sequence (CDS)

ATGACAGGTTTTGCCATGGACGTGCTGAAATTCTCTTCTGTTCCACTCCACTTCACTGCCAAGTTGAACAAATCCCGATTTCTGAAGCAGTGTTTGCAGGTTAATCTATTGCCCTCGTTGCCTTCTTCATTGATTAGCCGGCATAGTCGAAGATTCAATCTCCGTGCGAGCGTATCTTCCACCATTTCAACGGAGGAATTTGAATATGCGAGTCCGTTTGAGGATGAGGCCGAGAATGAACGGCGAGAGGATGAGAGGTTTGATTGGTATGCGCAATGGTACCCGATTATGCCGATTTGTGACCTTGACAAGAGGGTGCCGCATGGGAAAACGGTAATGGGGATTGATGTCGTGGTGTGGTGGGATAAGAATGAGAGTGCGTGGAAGGTGTTTGAAGATTCTTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATCAATGGGGGAGATTGCAATGTGTTTATCATGGCTGGTGTTTTAACGGATCTGGTGATTGTAAGTTCATCCCTCAGGCTCCCCCTGACGGCCCTCCGGTTCACACGTCCAAAAGGGCATGTGTTGCTGTTTATCCTAGCATTGTGCAGAATGACATTTTATGGTTTTGGCCAAATAGTGATCCCCAGTACAAGGATATTTTGGTGAAGAAAAAACCCCCTTACATTCCTGAATTGGACGATCCGTCATATACTAAGTTAACTAGTAACAGAGATCTTCCATATGGCTCATGTCCCGTATGCCCATTATGGGATAATGGGAATGCGCCAGCCCAATAA

Protein sequence

MTGFAMDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYGSCPVCPLWDNGNAPAQ

Homology

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BLAST of CmaCh11G007890 vs. Swiss-Prot
Match: PTC52_ARATH (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.4e-88
Identity = 146/207 (70.53%), Postives = 168/207 (81.16%), Query Frame = 1


Query: 37  LPSLPSSLISRHSRRFNLRASVSSTISTEEFEYASPFEDEAENERREDERFDWYAQWYPI 96
           LP  P+SLI+R S RF    S S   S+      SP E EA  E    ++FDWYA WYP+
Sbjct: 31  LPISPNSLITRKSSRFTTAVS-SPPSSSAATSTNSPPEPEALFEPGS-DKFDWYANWYPV 90

Query: 97  MPICDLDKRVPHGKTVMGIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCV 156
           MPICDLDK+VPHGK VMGID+VVWWD+NE  WKV +D+CPHRLAPLS+GRIDQWGRLQCV
Sbjct: 91  MPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCV 150

Query: 157 YHGWCFNGSGDCKFIPQAPPDGPPVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILV 216
           YHGWCFNGSGDCK IPQAPPDGPPVHT K+ACVAVYPS VQ++I+WFWPNSDP+YK+I+ 
Sbjct: 151 YHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIE 210

Query: 217 KKKPPYIPELDDPSYTKLTSNRDLPYG 244
             KPPYIPEL+DPS+TKL  NRD+PYG
Sbjct: 211 TNKPPYIPELEDPSFTKLMGNRDIPYG 235

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BLAST of CmaCh11G007890 vs. Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.8e-39
Identity = 95/246 (38.62%), Postives = 129/246 (52.44%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNK-----SRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSS 65
           M V+  SS     T   +K     S   K  L+V++ PS   S +  +  R     SV +
Sbjct: 1   MSVVLLSSTSATITKSQSKKIPFLSPTTKFPLKVSISPS--RSKLFHNPLRVAAPPSVPT 60

Query: 66  TISTEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVW 125
           + STEE      +  + E E  E   F W   WYP+  + DLD  VP    ++G D+V+W
Sbjct: 61  SDSTEEKRIEEEYGGDKEEEGSE---FKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLW 120

Query: 126 WDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPP 185
           +D+N+  W  F+D CPHRLAPLSEGR+D+ G LQC YHGW F G G C  IPQA   GP 
Sbjct: 121 FDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPE 180

Query: 186 VHT--SKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIP-ELDDPSYTKLTSN 244
                S RAC   +P++V   +L+ WP  D    D     +PP +P + D P ++ +T  
Sbjct: 181 ARAVKSPRACAIKFPTMVSQGLLFVWP--DENGWDRANSIEPPRLPDDFDKPEFSTVTIQ 239

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BLAST of CmaCh11G007890 vs. Swiss-Prot
Match: TIC55_PEA (Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-23
Identity = 62/175 (35.43%), Postives = 87/175 (49.71%), Query Frame = 1


Query: 72  PFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPH----GKTVMGIDVVVWWDKNESA 131
           P  ++     RE   +DW  +WYP+     L K VPH    G  V   ++V++ D N+  
Sbjct: 82  PSSEQERKGEREVADYDWTEEWYPLY----LTKNVPHDAPLGLKVYDKNIVLFRDGNDQ- 141

Query: 132 WKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSKRA 191
           ++ +ED CPHRLA LSEG++   GRL+C+YHGW F G G C  IPQ P D       K A
Sbjct: 142 FQCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPAD---AKIPKSA 201

Query: 192 CVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPY 243
           CV  Y       +LW W +     K      K P+      P +  +++  +LPY
Sbjct: 202 CVKTYEVRDSQGVLWVWMSR----KTPPNVSKIPWFENFARPGFQDISTTHELPY 243

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BLAST of CmaCh11G007890 vs. Swiss-Prot
Match: TIC55_ARATH (Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-23
Identity = 62/189 (32.80%), Postives = 95/189 (50.26%), Query Frame = 1


Query: 55  RASVSSTISTEEFEYASPFEDEAENERR-EDERFDWYAQWYPIMPICDLDKRVPHGKTVM 114
           R++V+ T  +++ E         E E+R E   +DW  +WYP+    ++ +  P G TV 
Sbjct: 49  RSAVAGTAVSDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVY 108

Query: 115 GIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ 174
              +V++ D  E   + +ED CPHRLA LSEG++   GRL+C+YHGW F G G C  IPQ
Sbjct: 109 DRQIVLYKD-GEGTLRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQ 168

Query: 175 APPDGPPVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTK 234
            P         K ACV  Y       ++W W ++    K     +K P+      P +  
Sbjct: 169 LPAS---AKIPKAACVKTYEVKDSQGVVWVWMST----KTPPNPEKLPWFENFARPGFFD 228

Query: 235 LTSNRDLPY 243
           +++  +LPY
Sbjct: 229 ISTTHELPY 228

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BLAST of CmaCh11G007890 vs. Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-12
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 1


Query: 93  WYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGR 152
           WYP      L+  +     + G+  V++ D++ SA    +DSC HR  PLS G++   G 
Sbjct: 134 WYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEH-SAPTCIKDSCAHRACPLSLGKVIN-GH 193

Query: 153 LQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSKRAC----VAVYPSIVQNDILWFWPNSD 210
           +QC YHGW F+GSG C  +P           S R C    VA  P + ++  +W WP   
Sbjct: 194 VQCPYHGWEFDGSGACTKMP-----------STRMCHGVGVAALPCVEKDGFVWVWPGDG 241

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BLAST of CmaCh11G007890 vs. TrEMBL
Match: A0A0A0LZA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600140 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 4.7e-115
Identity = 196/238 (82.35%), Postives = 211/238 (88.66%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTE 65
           MDVLK SS PLHFT+K NK +F  QCLQ+ L PS  SS I+R +  FNL A  SSTIST+
Sbjct: 1   MDVLKLSSSPLHFTSKFNKPQFPNQCLQIPLFPSSSSSSINRRNPIFNLCAITSSTISTQ 60

Query: 66  EFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 125
           E   A+PF+ +AE+E  E ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE
Sbjct: 61  ES--ANPFQVDAESEPGE-ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 120

Query: 126 SAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 185
           SAWKVF+D CPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK
Sbjct: 121 SAWKVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 180

Query: 186 RACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           RACVAV+PSIVQND+LWFWPNSDPQYKDI+ KKKPPYIPELDDPS+TKL SNRDLPYG
Sbjct: 181 RACVAVFPSIVQNDVLWFWPNSDPQYKDIMEKKKPPYIPELDDPSFTKLISNRDLPYG 235

[Close]

BLAST of CmaCh11G007890 vs. TrEMBL
Match: A0A0A0LX68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600130 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.3e-106
Identity = 183/238 (76.89%), Postives = 197/238 (82.77%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTE 65
           MDVLK SS PLHFT KL+KS+  KQC+Q+ L PS   SLI+R +R F L A+   T STE
Sbjct: 1   MDVLKLSSSPLHFTTKLSKSQRPKQCMQILLFPSSSFSLINRPNRGFKLCAT---TFSTE 60

Query: 66  EFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 125
           E        +  E    E ERFDWYAQWYPIMPICDLDKRVPHGK VMGIDVVVWWDKNE
Sbjct: 61  EIG------NPLEAVEAESERFDWYAQWYPIMPICDLDKRVPHGKRVMGIDVVVWWDKNE 120

Query: 126 SAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 185
           S WKVF+D CPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK
Sbjct: 121 SGWKVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 180

Query: 186 RACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           RACV+VYPS+VQNDILWFWPNSDPQYKDI+ KK PPYIPE+DDPSY KL  +RDLPYG
Sbjct: 181 RACVSVYPSVVQNDILWFWPNSDPQYKDIMAKKTPPYIPEIDDPSYAKLIISRDLPYG 229

[Close]

BLAST of CmaCh11G007890 vs. TrEMBL
Match: M5W8K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004005mg PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.9e-96
Identity = 164/240 (68.33%), Postives = 193/240 (80.42%), Query Frame = 1


Query: 6   MDVLKFSSVP-LHFTAKLNKSRFLK-QCLQVNLLPSLPSSLISRHSRRFNLRASVSSTIS 65
           M+ LK SS+P L   +K +K++  K      N +PS   SL+ R+   F +  + SS++S
Sbjct: 1   MEALKISSIPSLQIPSKFDKAQSKKLTSFCFNSIPSSSFSLVQRNISTFKIFTTTSSSVS 60

Query: 66  TEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDK 125
           TE    A+P E E EN R + E+FDWYAQWYP+MP+CDLDKRVPH K V+GIDVVVWWD+
Sbjct: 61  TEP---ANPPELEVEN-RTQQEKFDWYAQWYPLMPVCDLDKRVPHAKKVLGIDVVVWWDR 120

Query: 126 NESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHT 185
           NESAWKVF+DSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAP DGPP+HT
Sbjct: 121 NESAWKVFDDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPADGPPIHT 180

Query: 186 SKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           SK+ACVA YPS VQN I+WFWPNSDPQYKD+L +KKPPYIPELDDPSY+ L  NR++PYG
Sbjct: 181 SKKACVAAYPSTVQNGIVWFWPNSDPQYKDVLAEKKPPYIPELDDPSYSGLMGNREIPYG 236

[Close]

BLAST of CmaCh11G007890 vs. TrEMBL
Match: A0A067L4E1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01891 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 7.3e-92
Identity = 160/244 (65.57%), Postives = 190/244 (77.87%), Query Frame = 1


Query: 6   MDVLKFSSVP-LHFTAKLNKSRFLKQCL---QVNLLPSLPSSLISRHSRRFNLRASVSST 65
           M+ +  SSVP  H +    +++F K      Q N LP+   S I  +  +  L  +VSS 
Sbjct: 1   METITSSSVPSFHISTSSTQTKFAKPKFLNFQFNTLPASSFSRIHYNPSKSKLFTTVSSP 60

Query: 66  --ISTEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVV 125
             +STE  E   P E E E +  E ++FDWY+QWYPIMP+CDLDKRVPH K V+GIDVVV
Sbjct: 61  SFVSTESIE---PPEPELETDTHE-DKFDWYSQWYPIMPVCDLDKRVPHAKKVLGIDVVV 120

Query: 126 WWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGP 185
           WWD+NE+AWKVF+DSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGP
Sbjct: 121 WWDRNENAWKVFDDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGP 180

Query: 186 PVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRD 244
           PVH SKRACVAVYPS + +DI+WFWPN+DPQYKD+++KKKPP IPEL+DPS+TKL  NRD
Sbjct: 181 PVHASKRACVAVYPSTLHHDIVWFWPNTDPQYKDVIMKKKPPSIPELEDPSFTKLMGNRD 240

[Close]

BLAST of CmaCh11G007890 vs. TrEMBL
Match: W9SBE7_9ROSA (Protochlorophyllide-dependent translocon component 52 OS=Morus notabilis GN=L484_019086 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.1e-90
Identity = 154/244 (63.11%), Postives = 188/244 (77.05%), Query Frame = 1


Query: 6   MDVLKFSSV-PLHFTAKLNKSRFLKQCLQVNLLPSLPSSLI-----SRHSRRFNLRASVS 65
           M+ L+ S V  L   ++L+     ++ +  N+ P LP+S        R+  RF L  ++S
Sbjct: 1   MEALRTSPVHSLGLPSRLDNKTQFRKLISSNVNPFLPTSSFCSDHRQRNPSRFELFTTIS 60

Query: 66  STISTEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVV 125
           S++ST+    + P + E   E     +FDWY+QWYP+MP+CDLDKRVPHGK V+G+DVVV
Sbjct: 61  SSVSTD---LSDPPQPEVRTET-PGGKFDWYSQWYPVMPVCDLDKRVPHGKKVIGLDVVV 120

Query: 126 WWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGP 185
           WWD+NES WKVF+DSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDC FIPQAPPDGP
Sbjct: 121 WWDRNESDWKVFDDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCNFIPQAPPDGP 180

Query: 186 PVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRD 244
           PVHT K+AC A+YPS VQN I+WFWPN+DPQYKDIL+KKKPPYI E+DDPS+TKL  NRD
Sbjct: 181 PVHTFKKACAAIYPSTVQNGIVWFWPNTDPQYKDILMKKKPPYISEIDDPSFTKLMGNRD 240

[Close]

BLAST of CmaCh11G007890 vs. TAIR10
Match: AT4G25650.2 (AT4G25650.2 ACD1-like)

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-89
Identity = 146/207 (70.53%), Postives = 168/207 (81.16%), Query Frame = 1


Query: 37  LPSLPSSLISRHSRRFNLRASVSSTISTEEFEYASPFEDEAENERREDERFDWYAQWYPI 96
           LP  P+SLI+R S RF    S S   S+      SP E EA  E    ++FDWYA WYP+
Sbjct: 31  LPISPNSLITRKSSRFTTAVS-SPPSSSAATSTNSPPEPEALFEPGS-DKFDWYANWYPV 90

Query: 97  MPICDLDKRVPHGKTVMGIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCV 156
           MPICDLDK+VPHGK VMGID+VVWWD+NE  WKV +D+CPHRLAPLS+GRIDQWGRLQCV
Sbjct: 91  MPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCV 150

Query: 157 YHGWCFNGSGDCKFIPQAPPDGPPVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILV 216
           YHGWCFNGSGDCK IPQAPPDGPPVHT K+ACVAVYPS VQ++I+WFWPNSDP+YK+I+ 
Sbjct: 151 YHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIE 210

Query: 217 KKKPPYIPELDDPSYTKLTSNRDLPYG 244
             KPPYIPEL+DPS+TKL  NRD+PYG
Sbjct: 211 TNKPPYIPELEDPSFTKLMGNRDIPYG 235

[Close]

BLAST of CmaCh11G007890 vs. TAIR10
Match: AT3G44880.1 (AT3G44880.1 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-40
Identity = 95/246 (38.62%), Postives = 129/246 (52.44%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNK-----SRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSS 65
           M V+  SS     T   +K     S   K  L+V++ PS   S +  +  R     SV +
Sbjct: 1   MSVVLLSSTSATITKSQSKKIPFLSPTTKFPLKVSISPS--RSKLFHNPLRVAAPPSVPT 60

Query: 66  TISTEEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVW 125
           + STEE      +  + E E  E   F W   WYP+  + DLD  VP    ++G D+V+W
Sbjct: 61  SDSTEEKRIEEEYGGDKEEEGSE---FKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLW 120

Query: 126 WDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPP 185
           +D+N+  W  F+D CPHRLAPLSEGR+D+ G LQC YHGW F G G C  IPQA   GP 
Sbjct: 121 FDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPE 180

Query: 186 VHT--SKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIP-ELDDPSYTKLTSN 244
                S RAC   +P++V   +L+ WP  D    D     +PP +P + D P ++ +T  
Sbjct: 181 ARAVKSPRACAIKFPTMVSQGLLFVWP--DENGWDRANSIEPPRLPDDFDKPEFSTVTIQ 239

[Close]

BLAST of CmaCh11G007890 vs. TAIR10
Match: AT2G24820.1 (AT2G24820.1 translocon at the inner envelope membrane of chloroplasts 55-II)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-24
Identity = 62/189 (32.80%), Postives = 95/189 (50.26%), Query Frame = 1


Query: 55  RASVSSTISTEEFEYASPFEDEAENERR-EDERFDWYAQWYPIMPICDLDKRVPHGKTVM 114
           R++V+ T  +++ E         E E+R E   +DW  +WYP+    ++ +  P G TV 
Sbjct: 49  RSAVAGTAVSDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVY 108

Query: 115 GIDVVVWWDKNESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ 174
              +V++ D  E   + +ED CPHRLA LSEG++   GRL+C+YHGW F G G C  IPQ
Sbjct: 109 DRQIVLYKD-GEGTLRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQ 168

Query: 175 APPDGPPVHTSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTK 234
            P         K ACV  Y       ++W W ++    K     +K P+      P +  
Sbjct: 169 LPAS---AKIPKAACVKTYEVKDSQGVVWVWMST----KTPPNPEKLPWFENFARPGFFD 228

Query: 235 LTSNRDLPY 243
           +++  +LPY
Sbjct: 229 ISTTHELPY 228

[Close]

BLAST of CmaCh11G007890 vs. NCBI nr
Match: gi|778663338|ref|XP_004144087.2| (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 6.7e-115
Identity = 196/238 (82.35%), Postives = 211/238 (88.66%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTE 65
           MDVLK SS PLHFT+K NK +F  QCLQ+ L PS  SS I+R +  FNL A  SSTIST+
Sbjct: 1   MDVLKLSSSPLHFTSKFNKPQFPNQCLQIPLFPSSSSSSINRRNPIFNLCAITSSTISTQ 60

Query: 66  EFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 125
           E   A+PF+ +AE+E  E ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE
Sbjct: 61  ES--ANPFQVDAESEPGE-ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 120

Query: 126 SAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 185
           SAWKVF+D CPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK
Sbjct: 121 SAWKVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 180

Query: 186 RACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           RACVAV+PSIVQND+LWFWPNSDPQYKDI+ KKKPPYIPELDDPS+TKL SNRDLPYG
Sbjct: 181 RACVAVFPSIVQNDVLWFWPNSDPQYKDIMEKKKPPYIPELDDPSFTKLISNRDLPYG 235

[Close]

BLAST of CmaCh11G007890 vs. NCBI nr
Match: gi|700211278|gb|KGN66374.1| (hypothetical protein Csa_1G600140 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 6.7e-115
Identity = 196/238 (82.35%), Postives = 211/238 (88.66%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTE 65
           MDVLK SS PLHFT+K NK +F  QCLQ+ L PS  SS I+R +  FNL A  SSTIST+
Sbjct: 1   MDVLKLSSSPLHFTSKFNKPQFPNQCLQIPLFPSSSSSSINRRNPIFNLCAITSSTISTQ 60

Query: 66  EFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 125
           E   A+PF+ +AE+E  E ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE
Sbjct: 61  ES--ANPFQVDAESEPGE-ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 120

Query: 126 SAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 185
           SAWKVF+D CPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK
Sbjct: 121 SAWKVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 180

Query: 186 RACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           RACVAV+PSIVQND+LWFWPNSDPQYKDI+ KKKPPYIPELDDPS+TKL SNRDLPYG
Sbjct: 181 RACVAVFPSIVQNDVLWFWPNSDPQYKDIMEKKKPPYIPELDDPSFTKLISNRDLPYG 235

[Close]

BLAST of CmaCh11G007890 vs. NCBI nr
Match: gi|659100308|ref|XP_008451029.1| (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo])

HSP 1 Score: 421.0 bits (1081), Expect = 1.5e-114
Identity = 195/238 (81.93%), Postives = 210/238 (88.24%), Query Frame = 1


Query: 6   MDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTISTE 65
           MD+LK SS PLHFT K +K +F  QCL++ L PS  SS I+R + RF L A  SS IST+
Sbjct: 1   MDLLKLSSSPLHFTPKFDKPQFPNQCLRIPLFPSSSSSSINRRNPRFKLCAITSSAISTQ 60

Query: 66  EFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 125
           E   A+PF+ EAE+E  E ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE
Sbjct: 61  ES--ANPFQVEAESESGE-ERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNE 120

Query: 126 SAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 185
           SAWKVF+D CPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK
Sbjct: 121 SAWKVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTSK 180

Query: 186 RACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPYG 244
           RACVAVYPSIVQND+LWFWPNSDPQYKDI+VKKKPPYIPELDDPS+TKL SNRDLPYG
Sbjct: 181 RACVAVYPSIVQNDVLWFWPNSDPQYKDIMVKKKPPYIPELDDPSFTKLISNRDLPYG 235

[Close]

BLAST of CmaCh11G007890 vs. NCBI nr
Match: gi|659100310|ref|XP_008451030.1| (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 1.8e-107
Identity = 187/241 (77.59%), Postives = 205/241 (85.06%), Query Frame = 1


Query: 5   AMDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTIST 64
           AMDVLK SS PLHFT KL+KS+F KQC+Q+ L PS   S I+R +R F L A   +T ST
Sbjct: 2   AMDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCA---TTFST 61

Query: 65  EEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKN 124
           E  E  +PFE EA++ER    RFDWYAQWYPIMPICDLDKRVP GKTVMGIDVVVWWDKN
Sbjct: 62  E--ETGNPFEVEAQSER----RFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKN 121

Query: 125 ESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPVH 184
           ES WKVF+D CPHRLAPLSEGRID+WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPVH
Sbjct: 122 ESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPVH 181

Query: 185 TSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPY 244
           TSKRACV+VYPS+VQNDILWFWPNSDPQYKDI+ KK PP+IPELDDPSYTKL  +RDLPY
Sbjct: 182 TSKRACVSVYPSVVQNDILWFWPNSDPQYKDIMAKKTPPFIPELDDPSYTKLIISRDLPY 233

[Close]

BLAST of CmaCh11G007890 vs. NCBI nr
Match: gi|659100312|ref|XP_008451031.1| (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 1.8e-107
Identity = 187/241 (77.59%), Postives = 205/241 (85.06%), Query Frame = 1


Query: 5   AMDVLKFSSVPLHFTAKLNKSRFLKQCLQVNLLPSLPSSLISRHSRRFNLRASVSSTIST 64
           AMDVLK SS PLHFT KL+KS+F KQC+Q+ L PS   S I+R +R F L A   +T ST
Sbjct: 2   AMDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCA---TTFST 61

Query: 65  EEFEYASPFEDEAENERREDERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKN 124
           E  E  +PFE EA++ER    RFDWYAQWYPIMPICDLDKRVP GKTVMGIDVVVWWDKN
Sbjct: 62  E--ETGNPFEVEAQSER----RFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKN 121

Query: 125 ESAWKVFEDSCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPVH 184
           ES WKVF+D CPHRLAPLSEGRID+WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPVH
Sbjct: 122 ESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPVH 181

Query: 185 TSKRACVAVYPSIVQNDILWFWPNSDPQYKDILVKKKPPYIPELDDPSYTKLTSNRDLPY 244
           TSKRACV+VYPS+VQNDILWFWPNSDPQYKDI+ KK PP+IPELDDPSYTKL  +RDLPY
Sbjct: 182 TSKRACVSVYPSVVQNDILWFWPNSDPQYKDIMAKKTPPFIPELDDPSYTKLIISRDLPY 233

The following BLAST results are available for this feature:

BLAST of CmaCh11G007890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTC52_ARATH	2.4e-88	70.53	Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop...	[more]
PAO_ARATH	7.8e-39	38.62	Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1	[more]
TIC55_PEA	1.6e-23	35.43	Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1	[more]
TIC55_ARATH	3.5e-23	32.80	Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=1 SV=1	[more]
CAO_DUNSA	2.2e-12	33.88	Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1	[more]

BLAST of CmaCh11G007890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZA2_CUCSA	4.7e-115	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600140 PE=4 SV=1	[more]
A0A0A0LX68_CUCSA	2.3e-106	76.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600130 PE=4 SV=1	[more]
M5W8K1_PRUPE	4.9e-96	68.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004005mg PE=4 SV=1	[more]
A0A067L4E1_JATCU	7.3e-92	65.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01891 PE=4 SV=1	[more]
W9SBE7_9ROSA	1.1e-90	63.11	Protochlorophyllide-dependent translocon component 52 OS=Morus notabilis GN=L484...	[more]

BLAST of CmaCh11G007890 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25650.2	1.4e-89	70.53	ACD1-like	[more]
AT3G44880.1	4.4e-40	38.62	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	[more]
AT2G24820.1	2.0e-24	32.80	translocon at the inner envelope membrane of chloroplasts 55-II	[more]

BLAST of CmaCh11G007890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663338\|ref\|XP_004144087.2\|	6.7e-115	82.35	PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-...	[more]
gi\|700211278\|gb\|KGN66374.1\|	6.7e-115	82.35	hypothetical protein Csa_1G600140 [Cucumis sativus]	[more]
gi\|659100308\|ref\|XP_008451029.1\|	1.5e-114	81.93	PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-...	[more]
gi\|659100310\|ref\|XP_008451030.1\|	1.8e-107	77.59	PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-...	[more]
gi\|659100312\|ref\|XP_008451031.1\|	1.8e-107	77.59	PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017941	Rieske_2Fe-2S

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009536	plastid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G007890.1	CmaCh11G007890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	GENE3D	G3DSA:2.102.10.10		coord: 92..210 score: 8.8
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PFAM	PF00355	Rieske	coord: 92..176 score: 2.9
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROFILE	PS51296	RIESKE	coord: 93..203 score: 27
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	unknown	SSF50022	ISP domain	coord: 82..209 score: 4.58
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 34..243 score: 8.5E
None	No IPR available	PANTHER	PTHR21266:SF25	PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT 52, CHLOROPLASTIC	coord: 34..243 score: 8.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G007890	ClCG03G014420	Watermelon (Charleston Gray)	cmawcgB113
CmaCh11G007890	CsGy1G028660	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G007890	Carg06127	Silver-seed gourd	carcmaB0027
CmaCh11G007890	Carg18029	Silver-seed gourd	carcmaB0231

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G007890	CmaCh10G010010	Cucurbita maxima (Rimu)	cmacmaB078

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G007890	Cucumber (Gy14) v1	cgycmaB0396
CmaCh11G007890	Cucurbita moschata (Rifu)	cmacmoB105
CmaCh11G007890	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G007890	Wild cucumber (PI 183967)	cmacpiB084
CmaCh11G007890	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G007890	Melon (DHL92) v3.5.1	cmameB104
CmaCh11G007890	Watermelon (97103) v1	cmawmB099
CmaCh11G007890	Cucurbita pepo (Zucchini)	cmacpeB126
CmaCh11G007890	Cucurbita pepo (Zucchini)	cmacpeB153
CmaCh11G007890	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G007890	Melon (DHL92) v3.6.1	cmamedB111
CmaCh11G007890	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G007890	Watermelon (97103) v2	cmawmbB115
CmaCh11G007890	Wax gourd	cmawgoB0165