CmaCh10G011660 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G011660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosome biogenesis BRX1
LocationCma_Chr10 : 8366333 .. 8375761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTAGCGACGGAGGAAATCAAAGCCAAAGGGGCCGAAGTCTACAAAGGAGACGAGATTTGCCAAGAGAAATCCAAGGAATTGCTGAAGGAAATCGGTCTTCCAAATGGTCTTCTGCCATTGAAAGACATAGAAGAATGTGGGATCGTGAGAGAAACAGGGTATGTGTGGCTGAAGCAGAAGAAGAACACGACCCACAAGTTCGAGAAGATCGGGAAGCTGGTGTCGTATGCGACGGAGGTCACGGCAGTTGTGGAGAAGAACAGGATCAAGAAACTCACCGGAGTTAAGACCAAGGAGCTTCTGATTTGGGTGAGTTTGAGTGATATCTATGTGGATGATCCGCCCACCGGAAAGATCACGTTTCAGACTCCGGCGGGGCTGTTTAGGACTTTTCCGGTGTCGGCGTTTCAGGTTGAGGAGGCGTTAAAGCAGGTGAGTGAAAAGGAACATGGGGTGGGCGCTGTCGGAGTCAAGGAGGTCTGATCTGTATGTCTTATGGTTTTATATAATGAAATGAATGTTTTAATAGCTAATAAATCATGTGTTGTAGCTCGAGAATTTGGTTTACTGGTCTGTCTGGATTTGGGATGATCCCATTCATGTTTTTTTTTAATGGTGCACCACTATGGTGCCTTGATCTCTCTGTTTTTAGCTGTTATATGTGTTTTTGAGGGGTTAGGAGAAGGCTCGAGAGGAGTCAAGCCTTGAGGGGCGGTTATTCGAGAGGTCTAGAGAAGGAGGCCTCAAGGGAGCCTCTATAGTGTACTTTGTTCGACGGGAGGATTGTTAAGGATTATTGAGAGAAGTTATCCTCTGTCTCTTCATCTCTGTCTCGATATAGCTTCTGTGTCCTTAATAATGCATTTTCATTGAAAATTGTTTCAGTTGGAGAAGGGAATGAAACATTTCTTATAAGGATGTGTAAAATCGTGAGGTTAGTGGCAATACGTAACGGCAAAAAACGAGCAATATTTCCTAGGGTGCTACAAATGATATCAGAACAAATATCGGGCGGTATACCAATGAGGACGTTGGGCCTCCAAGGGGTGGATTGTGAGATCCTATATTAGTTGAAGAGGGGAATGAAACATAACTTATACAGGTTTTGAAACCTCTCCCTAATGGTTCTGTTTTAAAACTATGAGGTTGACGGAGGTACGTAATGAGACAAAATGAATAATATATACTAGTGGTAAACTTAGGCTATTACAAATGGTATCAAATCACTGGTGGTGTTCTAGTGAGCATGTTGGGCTCTCAAGAGGGTGTTATGTGAGATTCTATATCGGTTGGAGAGGGGAACGAAACATTCTTACGGGTGTGAAAACTTGTAGCTGCGTTTTAAAATTGTGAGGTTGACAGCGATGCGTAACGGGAAAAAACGTATAATATTTGCAAACGGTGAACTTAGACTATGAAAAATTGTATTAAAGCAGATATTCGGTGGTGTACTAGCGAGAATGGAAAAGAGAAGATGGGACCTAACTTTTAGGGTCGAGAAACGTAATAATCACATGCAATCATGGTTTATGATGGGACCTAACTTTTTGTGAAGATTCCTGGAGCCGACTTTCTTTTCTAGGTAGGGTTGGATGCATAGTACTTCTCTCTACATGGTTCACACACGTTCGCATGAATCCACTAGGTGGGTTCATATACGAAGTCTATAAGCGTGACTACGGGCTAACACATGCTCACGTTGTCGTAAACCCATGGAAAGAAAGGAACTTGTATCATATCATGGTGTACGTGTCCATACAAAACATATTGGAGAAGTATCCTAGGCTCGCAACATGCCATATGCATAAGATCCTGTATTTTCGAATAATGGTATATAGTTATGATGAACATCTTACTTCCATTCTTTTCATGACATTACTTTCCTACGAGACATACTTACATGTACATGGCATATTTTTCTTTATTATCGTACATGTCTCATCAATGTCTCGTAGGCGTAATGTAAACATGATATCACGTGGATTGACATACTGGAAGTACGGCTGCGGAATATTGGCTAAATAGCTACCTTAATGACCTTAAATTCTTCCAATTATGTCAAAATCGGCTCCTTGGTGCAATGCTGTAAGAAATCTTAAATAGAGCTACCTAAGCCATCAAAGTTGAATTGGAGCCGAACCCATCCCGAGCAGGGAGGGGATTTCCCATTTAGACGGGAATGGAGGATGAAGTGGAGAACAATTTTTTCTATAAAATGGGACCGTAAACTTTGTCCTGTTCTCATCCGGTATTTTTTTTATATTTTTTTATTATATTAAAAAAAATTAATTAGTTTTGAGACTCTTATTTTTTAAAATTCAACTATATATATATATATATATATATATATATATATTTTAAATAATACTTTTAATTTTTTTAAAAGATTTTATTAATGAAAAGTATAAAATTTAAAATATTTTTATACATTTAGTCTTTTATCCTTTTAAACATCCGAAATTTCTATTATTCTAAACCCTATTTCACGTCCCGCCACACTACCCTCCCATTACCAGCCACTGCACCCCGCCCACACGGTCGCTTCACTCCGCTCCTGCCCGACGACGTCTCAGCGGTTGCCGCCGCACGCCGCACTCTCAACTGTTGCAGTCTCAGTATTCCGTCGAACTTGCCGTTGCTTCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAACCAGAGTTACTCATCTCTGTTGTTTTTTCCCCCCCACTGAAACAGTTGTTCAGCCACTAACCCTCGCCGTGGGTGAGTTCGTGCCGACCCTTACGCGCGCTGCCGCTCAATTTTCAGATACTTGGGTATTGATTTTTTGTTTGATTCTTTATTTTGTTTCGTTGGTTTATGTTGACTTGTTTGGTTTCGTTGTTGATTTCTTCTTCAACCAATGTTGAACTAAGAACGTATGCATTACAGAGTAGAGAAAGAACAGATTGAATAACTAAATTTGAAGGAACAAAAAGACGTATTATTCTTCATCTGAATCAATAAAAAAAAAAAAAAAGGAGAAACAAAAAAGAAAGGAAGGGTTTAAAAAAGGATATCTTATGAGATAAAATTGAAAATAATTCGTTAGTTTAAAATCCTTCCTTCCAAGTCCGACCAATTTGGAATAGATTTTTTTTTTTTTTTTTTTATTAAAAAAGAAGAAGATTTCAATCACTATTTATTTTTTGTTAACCTCCATTACTTGATTTTATGTGTAGTATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAAGAAGTCACAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGGCGAATCAATTTTAGGTATGAAATATAGACAGGTCAATTTGACTTGCATACTTACATATGGAACATGAACACTTGAATCAATTGGGCTGCTGATAGTTTACATATTTTTATAAGAAACAAAAAATTCTTATATCATTTTGTCTTCTGGTACAAGGTGTCAGGGTGTTTTTAAATGATCTATAAATATAATCTTTAATTCAATTGTTAATTTAATCATATGATTGGTGAAGTTGAAGAAAGGAAGAAGTGTTTATTGTAATTGTACTTTGTATTATACTGTTCTGGTGCTCTTTAAGTCGAGTATTGATTTCCCTGCAAGAAGAACATGGTTCAAACGCAATGTGGAGTAGGTTTAAGAGGAAAACCAAGAACTATTTTGATGAATGCTGTCATAGCTTTTCATGGGCTATGTGATTAGAAAGAAATAGTGATATTGATTGACTGCCTCCATTATGTTTTTGCTAGCAAATCCCACTATTTTTTGTTTTAGATCTTCCAAATCATTCTCGGGGGAAGTCTGTACCCATTTTTTTTTTTAATCCTTTGATAAAACAATTCATTCTCTTCATAAAAAATAGGAGGTAGAACCAATAAATATTTCTTTTCGATTCATCCCTCGAGTTGAATACCTCATTCAAAAATTGTTTTTGATCTTTCCTTTCGGTGTTTACTCTCTACACCTTTCTGTTATTACATCATTTTAGTTGAAATACGTTGGTGTAGCTTTTTGTAAAATCTTTTAAGAGGTATATACAGGGTCAGTTAGTTAGTGATTCAACATTTCACTCAGCATTAGAAAGTAGTGATAGTAACTTTTCACTCATCATTAAAAAGTTTTTCTTCCTTGAGAGTCGTGGCGATTTTATTTAACCTTTGTGATTGATTAGGTATCGGCACTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGGTTAGAACTTTTTATTTGCACCTTGTCCATGTCAAACTTGGAATTCAATTCATAATCGGGAATTTGTTTGATACAAGATAGGATGATAAATTTTTGGCTTCTGTTGTGGTGTAAGGATGCATTAAATTTCCATTTCTTTTCGTTCTATTATCATTCTTCCTGCCTTTTCATCATGTTTTTCCACTCGTTCTGTAACAATAACTTTGAATTAATTATTTCGTTCTTGATTTGGAAGGGTCTTTTTGTCCCCTGGATTTTGATCCTGCAAAGTTGAATTAATTGTTTTATTTCCAAAGCTTATTGCAAGATTTTTTAGTTCTTTTTCTTTCTGTTGTTATTATTTCTAACATTTTACATGCTATATAGCATTCACATGAGTTTACTTTTGATCTTTTTGTCTATACTTCCAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCTGGTAATTTTAATGTGCAATCAAATCTTATTACTCGATTTCATGGCTGAAGTTATATTGGATTTCTTAATTAAATACAGTTTGCTTACTTTTCCATTGTTTTTTTTTCAGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGATGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTAGCAATGGAAAAGTTTGTTCAAGTAATTCAATTTTGAACTATTTTCATTTTTTTGAAAAAGAAAACGTATTTCATTGTTGTATGAAATGGGAAAAGGAGTAAAAAACTTGAAACATGAAAAGGTGGATTATAAGAAACTTCTCCAATTTGTAAGGAGTAAAGGCTATAAACTCTAAATGGATATTTAAATTTGCACCTTAATAAGCACAAACATGGGCGCGATGATACATCAATTTTTTAAAAAAAGTAGGACTGACACATGGGTGGCATAATTTTTTTTATATAAAATGTGTATGTTTAGAATGCCCTCTAAGGTTGGGAATGGGCCATGTACAAACAGTTTCTGTGGGATAATTAATAATATTTAGCCTTAATAAGCTTATAGTCTCTGCATATGAACAGCCAAAACCATTTCAATGGTTAACCACAAGTTGTTCCTGCTTAAACTATTTTTCATTCTTACACGTGAATCAGTAAATGTATTAGATATCAGTTTCCTAGTCTTTCTTCTTTGAATTTGTTTGTTTTTCTCTTTCTTTGTTCCCTCAATCCAAATTTAGAATGATTTGAAATTAATAAAATAATTTTTGCATGACTGTAGTTGAATTATATTCTTTTATTCTTCTTTATTATGGTTTTTATGCAAACAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAAGAAAAATGAAAATGCTCATCTTTCATGTAAAATATACTATGACATAAGAATATGGAATACTTGTGCCCGATTTCACATTTTTACACTGGTGCCCCAATACTGTCACTCTCTTATTATGCTGCCTTTATTAATTTCCTGATTTGGGTGGTCATATTAGTTTGATTTGCTGCCTATTTACTATGCTGTGAAAAGTAATTGTGGATTGTAGTTGCTTCTTCAAATAATGGCGTTCTTGTTTACAAATCCTTTGTAGTCTCATCTCAATTTGTCATAATTTTAGCTTAAATTGTTTTCCCCCCCAGATTTTTGGAACTCCGAAGGAACATCGACATTCGAAGCCGTACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGGTATGGTTTATTTATATTTTTACCTGTTACTGAATTTAATTCTCTCTATCGTTGGTTGCATCCAAATACACAACTTCCACATTTCATGCAAATCATGTACTTGATGCAGTCCTTTCTGTTGAATGTGAGCAAGAACTTTACCCATTGCTGGATCGTCTGCTTTCTTTTCTTTTTTGGTCTCAAAACAAGAAAGTTTTCGAAGTTCGGGTGCCTATTTAAAAGGTGTAGCTTGAGTGCAAAGTATGGGGACCTGAGGGACAATGTGTGTTTTTTGGTCAAGTAGTGTCTACCAGGATTCATTAGGTTGGAGGGGCTTGAGATTAAGCAAATTTTGGCGAATAATTTTTTGGGAGAGCCCAGGTTTCTCTTGTCCATATGTAAACAAAACTCTATTAATTTTTAGTTCAATTTCTAGTACCTATCAGATTTCTTAGTCCATTTTCATATAATTGTTGGTATAAGTTCTCGCTTGGCGGTTGCGTGGGCGTGTCATCCCCAACGAACCATTACTTAATGATGTGGCTTTGTCTTCTTTGTTTGGTGTGATTAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTGGATAAAATGACTCTCATTGAGGTTATTAACCTTCCTCTCCCCGCTTTGTTTATAAATGAGTATTCACAATTTTTGGTTAACTTAAAAAATTTATATTTTACAGGTCGGTCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGGTTAGACGACTCAACTTTTTGATGATTTGGGATTACACTTCTTCACTATGCCTTTACAATATAATTGAGGGTTTACTGAGGAGGCATTAGCTGCTATGCTTTTATGGTTTCTCCAAGTTCATTTTGTACAAGAGAACTGAAGTATAGGTATTACAGAAAAAGAAGTTATTTCAAAGGCCAATTATTCGTTATCTTCTTCAATTCAAGGTTCTTTGAGAAATGATCTGGCTCATCTCATTATGCTTGTAGTAATGTTTTTTCTATTCATGGTTGAATACCTGGAATTGCAATACTCCCTTGCATTCTTTAGAGAACACTAGTAGTGGGAGGTGGGGGGATGGTTGAGAGGGAGTCCTACGTTTGCTAATTAGGGAATGATCATGAGTTTATTAGTAAGGAATACATGTCCATTGGTACGAGGCCTTTTGGAGAAACCAAAAGCAAAATCATGAGAGTTTATGCTCACAGTGGACAATATCAATACCATTGTGGAGGTTTGTGTTTCCTAACATAGAATACTCAAATGTTGAACAAATAAGTTGTGAGCTTCGAAGATGTGGTCGAACAAAGGGTATATTTTGTTCGAGGACCCCAGAGAAGGAGTCAAGCCTCGATTAAGGGGAGGCTGTTTCAGGGCTCCATAGTCCTTAGGGGATGCTCTATTCTATAGTGTATTTTGTTTGAGGGGAGGATTGTTGAGAGAGAGTCCCACATTAGCTAATTTAGGGAATGATCATGGATTTATAAGTAAGGGTTTATAAGTAAGGAATACATCTCAATTGGTATGAGGTCTTTTAGAGAAACTAAAAGTAAAACGATGAGAGCTTATGCTCAAAATAGATAATATCATATCATTGTGGAGGTCCGTAATTCCTAACAAGCAGCTCATCTGATCTACGAACCGATGGAACCAAGTTCTATAATTTGAGCTTTACAATTAGACATAGACTTGCTCATGCTTTTGATGTCTCTCCATAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGTAGGAATAGTCTTTGGATGGACTTCATCTTGTCTAGACTCAAAATTAAAGTTCCTCACCCCTCCAATGAAATGGGTATTTGTTCTCTAATGTACTGTTATCTATAGTGCAAATTTTGTCCTCGTTATTTATTTAAACCTGGAATTCTGTTTCTGTATGTTCAATGTTTGAATGCTTTAGATATGATTTTATAAGATATGTTACAATGAGTGGAGTAGTTCTAGTTACTCGAGATCGTATGGATTCTGGTTATGATCTTCTACACGACCTCATTGGTGACTTACACTCTAGTCCTAACAATTTGCAATTTGTATTCACCTACTTCATCCCACTATACTAGGAACTTGCACTGTTTCTTTGAACAATTTCATGTTATTATACGCGAATTTTATGAGGTGCAATTTGGAGGTCCCAATTACCTAATAAATCCAACACGTAGACACACAAAAATCCTTCCAGTGTTTGGTTTAGATGTTCGGTTTGTCTATCTGTCCATGAGTGAATAGCAGATTAAAACTCAATTGTGTACTTGCAACTTTTTGAAGGATACAATAAAATTTTGATGTGAAGAGTGGATTCCAATCCGACATGGGCTCTCCATGTAGTTTGACAATTTTCTTCATATATAGTTGTGCCGAATGTTCTATTATGCAGGTAACCGTTCTTAGTAGAAAACGTGTAGACTTGGTTGATCACCCATATCATCATGTGGCCTTTCAAAGTTCTTGGTAGACCTACGATGAAATTCAGTGTTATGTTCTTTCATTTTCACTAGGA

mRNA sequence

ATGTCTGTAGCGACGGAGGAAATCAAAGCCAAAGGGGCCGAAGTCTACAAAGGAGACGAGATTTGCCAAGAGAAATCCAAGGAATTGCTGAAGGAAATCGGTCTTCCAAATGGTCTTCTGCCATTGAAAGACATAGAAGAATGTGGGATCGTGAGAGAAACAGGGTATGTGTGGCTGAAGCAGAAGAAGAACACGACCCACAAGTTCGAGAAGATCGGGAAGCTGGTGTCGTATGCGACGGAGGTCACGGCAGTTGTGGAGAAGAACAGGATCAAGAAACTCACCGGAGTTAAGACCAAGGAGCTTCTGATTTGGGTGAGTTTGAGTGATATCTATGTGGATGATCCGCCCACCGGAAAGATCACGTTTCAGACTCCGGCGGGGCTGTTTAGGACTTTTCCGGTGTCGGCGTTTCAGGTTGAGGAGGCGTTAAAGCAGGTGAGTGAAAAGGAACATGGGGTGGGCGCTGTCGGAGTCAAGGAGCTCGAGAATTTGGTTTACTGTATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAAGAAGTCACAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGGCGAATCAATTTTAGGTATCGGCACTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCTGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGATGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTAGCAATGGAAAAGTTTGTTCAAATTTTTGGAACTCCGAAGGAACATCGACATTCGAAGCCGTACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTGGATAAAATGACTCTCATTGAGGTCGGTCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGTGCAAATTTTGTCCTCGTTATTTATTTAAACCTGGAATTCTGTTTCTGA

Coding sequence (CDS)

ATGTCTGTAGCGACGGAGGAAATCAAAGCCAAAGGGGCCGAAGTCTACAAAGGAGACGAGATTTGCCAAGAGAAATCCAAGGAATTGCTGAAGGAAATCGGTCTTCCAAATGGTCTTCTGCCATTGAAAGACATAGAAGAATGTGGGATCGTGAGAGAAACAGGGTATGTGTGGCTGAAGCAGAAGAAGAACACGACCCACAAGTTCGAGAAGATCGGGAAGCTGGTGTCGTATGCGACGGAGGTCACGGCAGTTGTGGAGAAGAACAGGATCAAGAAACTCACCGGAGTTAAGACCAAGGAGCTTCTGATTTGGGTGAGTTTGAGTGATATCTATGTGGATGATCCGCCCACCGGAAAGATCACGTTTCAGACTCCGGCGGGGCTGTTTAGGACTTTTCCGGTGTCGGCGTTTCAGGTTGAGGAGGCGTTAAAGCAGGTGAGTGAAAAGGAACATGGGGTGGGCGCTGTCGGAGTCAAGGAGCTCGAGAATTTGGTTTACTGTATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAAGAAGTCACAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGGCGAATCAATTTTAGGTATCGGCACTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCTGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGATGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTAGCAATGGAAAAGTTTGTTCAAATTTTTGGAACTCCGAAGGAACATCGACATTCGAAGCCGTACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTGGATAAAATGACTCTCATTGAGGTCGGTCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGTGCAAATTTTGTCCTCGTTATTTATTTAAACCTGGAATTCTGTTTCTGA

Protein sequence

MSVATEEIKAKGAEVYKGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGYVWLKQKKNTTHKFEKIGKLVSYATEVTAVVEKNRIKKLTGVKTKELLIWVSLSDIYVDDPPTGKITFQTPAGLFRTFPVSAFQVEEALKQVSEKEHGVGAVGVKELENLVYCISEGVTFSMVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFADMCANFVLVIYLNLEFCF
Homology
[Close]
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-63
Identity = 124/258 (48.06%), Postives = 171/258 (66.28%), Query Frame = 1 

Query: 227 FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 286
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 287 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 346
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 347 DAHWKLLKEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPH 406
             H+ LLKE++        +QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI    
Sbjct: 176 LPHYALLKELL--------IQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII--- 235

Query: 407 NESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQK 466
            E D           L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   
Sbjct: 236 -EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSIT 291

Query: 467 AGKYSKKVKAKTRRKMHE 485
           A KY +K + K  +K+ +
Sbjct: 296 AAKYREKQQVKDVQKLRK 291

[Close]
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match: BRX1_XENLA (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-63
Identity = 139/322 (43.17%), Postives = 196/322 (60.87%), Query Frame = 1 

Query: 180 KRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSE----SDSDHAVFRNKEKVLV 239
           KRK   +LP V+        +++K+ L G  ++E T   E           ++NKE+VL+
Sbjct: 5   KRKRG-SLPEVATNT-----KKAKKQLAG-SEQEATAGEEFIVPPPVSEGKWKNKERVLI 64

Query: 240 TCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKH 299
             SR INFR RHLM ++ SL+PH + + K++ R  K   +NE+ E+K C+  ++FE +K 
Sbjct: 65  FSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEAKKK 124

Query: 300 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKE 359
           +DLY+W++  P GPS KFLV  +HT+ ELK++GN LKGSRPIL+F   FD++  + LLKE
Sbjct: 125 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 184

Query: 360 IIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARG 419
           ++         QIFGTP+ H  S+P+ DH+F FSI D+ IWFRNYQI     E D     
Sbjct: 185 LL--------TQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED----- 244

Query: 420 GLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVK 479
                 L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A K  +K +
Sbjct: 245 ----AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKEKQQ 297

Query: 480 AKTRRKMHELSN----PLEPDE 494
            K  +K+ +  +    P++P E
Sbjct: 305 VKEVQKLKKEEDRPVIPVDPTE 297

[Close]
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-63
Identity = 133/308 (43.18%), Postives = 192/308 (62.34%), Query Frame = 1 

Query: 179 KKRKHSETLPAVSVKKDDVAPER-SKRTLTGWK-DKEVTTKSESDSDHAVFRNKEKVLVT 238
           +KR+    + A   K++++  E  +KR  T  + ++E   +         ++NKE++L+ 
Sbjct: 6   RKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIF 65

Query: 239 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 298
            SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+  ++FE +K +
Sbjct: 66  SSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQ 125

Query: 299 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEI 358
           DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+  H+ LLKE+
Sbjct: 126 DLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKEL 185

Query: 359 IVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGG 418
           +        +QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D      
Sbjct: 186 L--------IQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED------ 245

Query: 419 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 478
                L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K + 
Sbjct: 246 ---AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQV 291

Query: 479 KTRRKMHE 485
           K  +K+ +
Sbjct: 306 KDVQKLRK 291

[Close]
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.0e-63
Identity = 128/279 (45.88%), Postives = 175/279 (62.72%), Query Frame = 1 

Query: 210 KDKEVTTKSESDSDH-------AVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKD 269
           K  +V  ++E + D          ++NKE++L+  SR INFR RHLM ++  L+PH K D
Sbjct: 31  KQADVAKEAEEEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKAD 90

Query: 270 NKVESRSTKGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTME 329
            K++ R  K   +NE+ E+K C+  ++FE +K +DLY+W++  P GPS KFLV  +HT+ 
Sbjct: 91  TKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLA 150

Query: 330 ELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEIIVQVAMEKFVQIFGTPKEHRHSKPYH 389
           ELK+TGN LKGSRP+L+F   FD   H+ LLKE +        +QIF TP+ H  S+P+ 
Sbjct: 151 ELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFL--------IQIFSTPRYHPKSQPFV 210

Query: 390 DHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFG 449
           DHVF F+I+D+ IWFRN+QI     E D           L+E+GPRF LN IKIF GSFG
Sbjct: 211 DHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFG 270

Query: 450 GPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 482
           GPTLYENP Y SPN  R + +   A KY +K + K  +K
Sbjct: 271 GPTLYENPHYQSPNMHRRVVRSITAAKYREKQQVKDVQK 287

[Close]
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match: BRX1_YEAST (Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-62
Identity = 124/287 (43.21%), Postives = 180/287 (62.72%), Query Frame = 1 

Query: 212 KEVTTKSESDSDHAV-FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRST 271
           K    KSE    +   F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++++  
Sbjct: 11  KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70

Query: 272 KGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNH 331
               LNE+ EL  C++ LFFE RKH+DLYLW++K P+GP++KF +  +HTM+EL  TGN 
Sbjct: 71  L-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNC 130

Query: 332 LKGSRPILTFSSNFDKDAHWKLLKEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSI 391
           LKGSRP+L+F   F+   H++L+KE++        V  FG P   R SKP+ DHV  FSI
Sbjct: 131 LKGSRPVLSFDQRFESSPHYQLIKELL--------VHNFGVPPNARKSKPFIDHVMSFSI 190

Query: 392 VDDHIWFRNYQIAVPHNESDKVA-RGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYEN 451
           VDD IW R Y+I+  H+  +K     G + ++L+E+GPRF +  I I  GSFGGP +YEN
Sbjct: 191 VDDKIWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYEN 250

Query: 452 PLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFAD 497
             YVSPN +RA  K+Q A +   + +A   RK+    N L  D  ++
Sbjct: 251 KQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286

[Close]
BLAST of CmaCh10G011660 vs. TrEMBL
Match: A0A0D2SNA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 1.7e-156
Identity = 273/327 (83.49%), Postives = 298/327 (91.13%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKE-VTTKSESDSDHA-VFRNKEKVL 236
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE V  ++ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 237 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 296
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 297 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLK 356
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDAHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 357 EIIVQVA----MEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESD 416
           E+I+Q +       F QIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESD
Sbjct: 181 EMIIQFSDTFFSIIFFQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESD 240

Query: 417 KVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKY 476
           K+ RGGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY
Sbjct: 241 KMVRGGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKY 300

Query: 477 SKKVKAKTRRKMHELSNPLEPDEFADM 498
           +KKVKAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 AKKVKAKTRRKMHELSNPLEPDEFADM 327

[Close]
BLAST of CmaCh10G011660 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 1.4e-155
Identity = 271/323 (83.90%), Postives = 295/323 (91.33%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKE-VTTKSESDSDHA-VFRNKEKVL 236
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE V  ++ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 237 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 296
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 297 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLK 356
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDAHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 357 EIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 416
           E+I+Q        IFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ R
Sbjct: 181 EMIIQ--------IFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVR 240

Query: 417 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 476
           GGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKV
Sbjct: 241 GGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKV 300

Query: 477 KAKTRRKMHELSNPLEPDEFADM 498
           KAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 KAKTRRKMHELSNPLEPDEFADM 315

[Close]
BLAST of CmaCh10G011660 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 1.4e-155
Identity = 271/323 (83.90%), Postives = 295/323 (91.33%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKE-VTTKSESDSDHA-VFRNKEKVL 236
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE V  ++ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 237 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 296
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 297 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLK 356
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDAHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 357 EIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 416
           E+I+Q        IFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ R
Sbjct: 181 EMIIQ--------IFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVR 240

Query: 417 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 476
           GGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKV
Sbjct: 241 GGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKV 300

Query: 477 KAKTRRKMHELSNPLEPDEFADM 498
           KAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 KAKTRRKMHELSNPLEPDEFADM 315

[Close]
BLAST of CmaCh10G011660 vs. TrEMBL
Match: A0A061F737_THECC (Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 1.2e-154
Identity = 271/324 (83.64%), Postives = 288/324 (88.89%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVT---TKSESDSDHAVFRNKEKV 236
           M KKRK SET  A    KD+ APER KRTL GWKDKE     T+S  DS   VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 237 LVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECR 296
           +VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVES+S+KGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 297 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLL 356
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+KDAHWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 357 KEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVA 416
           KE+I+Q        IFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ 
Sbjct: 181 KEMIMQ--------IFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMV 240

Query: 417 RGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKK 476
           RGGLDKMTL+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KK
Sbjct: 241 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKK 300

Query: 477 VKAKTRRKMHELSNPLEPDEFADM 498
           VKAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 VKAKTRRKMHELSNPLEPDEFADM 316

[Close]
BLAST of CmaCh10G011660 vs. TrEMBL
Match: A0A067JSR7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22878 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 1.2e-151
Identity = 267/321 (83.18%), Postives = 283/321 (88.16%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 236
           M KKRK SET      KKD+ APER +RTL GWKD     K   +++  VFRNKEKVLVT
Sbjct: 1   MGKKRKISETEVTAPSKKDESAPERPQRTLLGWKDNGSEVK---ETETQVFRNKEKVLVT 60

Query: 237 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 296
           CSRRIN+RYRHLMLN+VSLLPHCKKDNKVES+S+KG  LNELVELK CSS LFFECRKHK
Sbjct: 61  CSRRINYRYRHLMLNVVSLLPHCKKDNKVESKSSKGMALNELVELKSCSSCLFFECRKHK 120

Query: 297 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEI 356
           DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNFDKD HWKLLKE+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDDHWKLLKEM 180

Query: 357 IVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGG 416
           I+Q        IFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDKVARGG
Sbjct: 181 IIQ--------IFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKVARGG 240

Query: 417 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 476
           LDKMTL+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEKKQKAGKY+KKVKA
Sbjct: 241 LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKQKAGKYAKKVKA 300

Query: 477 KTRRKMHELSNPLEPDEFADM 498
           K RRKMHE+SNPLEPDEFADM
Sbjct: 301 KKRRKMHEMSNPLEPDEFADM 310

[Close]
BLAST of CmaCh10G011660 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 526.2 bits (1354), Expect = 2.3e-149
Identity = 255/321 (79.44%), Postives = 281/321 (87.54%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 236
           M +KRKHSET+ A  VK  D APER +RTL GWKDK+   ++   +  +VFRNKEKVLVT
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 237 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 296
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++S++GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 297 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEI 356
           DLY+WM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+ DAHWKLLKE+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEM 180

Query: 357 IVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGG 416
           +         QIFG P+ HR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG 
Sbjct: 181 L--------TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGD 240

Query: 417 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 476
           LDKMTLIEVGPRFCLNPIKIFGGSFGG TLYENP YVSPNQIRALEK+ KAGK++KK+KA
Sbjct: 241 LDKMTLIEVGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKA 300

Query: 477 KTRRKMHELSNPLEPDEFADM 498
           KTRRKMHELSNPLEPDEF DM
Sbjct: 301 KTRRKMHELSNPLEPDEFTDM 311

[Close]
BLAST of CmaCh10G011660 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 515.4 bits (1326), Expect = 4.1e-146
Identity = 252/326 (77.30%), Postives = 284/326 (87.12%), Query Frame = 1 

Query: 177 MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAV----FRNKE 236
           M +KRKHSET  PA   K D+ AP+R KRTL GWKDK   ++ E++   A+    F+NKE
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDK---SEGEAEKAKALTSSGFKNKE 60

Query: 237 KVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFE 296
           KVLVTCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++S+KGATLNEL+ELK  +S LFFE
Sbjct: 61  KVLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFE 120

Query: 297 CRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWK 356
           CRKHKDLY+WM K P+GPSVKFLV AVH MEE+KLTGNHLKGSRP+LTFSSNFDKDAHWK
Sbjct: 121 CRKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWK 180

Query: 357 LLKEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDK 416
           LLKE++ QV        FG PKEHR SKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK
Sbjct: 181 LLKEMLTQV--------FGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDK 240

Query: 417 VARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYS 476
           +A+GGLDKMTLIEVGPRFCLNPIKIF GSFGGPTLYENPLYVSPNQIRALEK+ KAGK++
Sbjct: 241 IAKGGLDKMTLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFA 300

Query: 477 KKVKAKTRRKMHELSNPLEPDEFADM 498
           KK+KAKTR+KMHELSNPLEPDEFADM
Sbjct: 301 KKIKAKTRKKMHELSNPLEPDEFADM 315

[Close]
BLAST of CmaCh10G011660 vs. TAIR10
Match: AT1G56580.1 (AT1G56580.1 Protein of unknown function, DUF538)

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-50
Identity = 102/158 (64.56%), Postives = 123/158 (77.85%), Query Frame = 1 

Query: 1   MSVATEEIKAKGAEVYKGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGYVWLK 60
           M + T+E++A+ AE Y GDEIC+EK+KE LKE+ +PNGLLPLKDIEE G  RETG VWLK
Sbjct: 1   MGLVTDEVRAR-AEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLK 60

Query: 61  QKKNTTHKFEKIGKLVSYATEVTAVVEKNRIKKLTGVKTKELLIWVSLSDIYVDDP-PTG 120
           QKK+ THKFE IGKLVSYATEV A VE  +IKKLTGVK KELLIWV+L+++ ++ P  +G
Sbjct: 61  QKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSG 120

Query: 121 KITFQTPAGLFRTFPVSAFQVEEALKQVSEKEHGVGAV 158
           KI F+TP GL RTFPVSAF V E  K  +EK +G   V
Sbjct: 121 KINFRTPTGLSRTFPVSAFVVPEVEKPATEKNNGTTEV 157

[Close]
BLAST of CmaCh10G011660 vs. TAIR10
Match: AT1G09310.1 (AT1G09310.1 Protein of unknown function, DUF538)

HSP 1 Score: 193.0 bits (489), Expect = 4.6e-49
Identity = 104/167 (62.28%), Postives = 125/167 (74.85%), Query Frame = 1 

Query: 1   MSVATEEIKAKGAEVYKGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGYVWLK 60
           M + TEE++AK AE+Y GDEIC+EK+K  LKEI +PNGLLPLKDIEE G  RE+G VWLK
Sbjct: 1   MGLVTEEVRAK-AEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLK 60

Query: 61  QKKNTTHKFEKIGKLVSYATEVTAVVEKNRIKKLTGVKTKELLIWVSLSDIYVDDPPTGK 120
           QKK+ THKF +I KLVSY TEVTA+VE  +IKKLTGVK KELLIWV++++IY ++PPT K
Sbjct: 61  QKKSITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYTEEPPT-K 120

Query: 121 ITFQTPAGLFRTFPVSAFQV------EEALKQVSEKEHGVGAVGVKE 162
           ITF+TP  L RTFPV+AF V      EE  K+   KE    A   KE
Sbjct: 121 ITFKTPTTLSRTFPVTAFIVPEEPAKEEPAKEEPAKEKSSEATEAKE 165

[Close]
BLAST of CmaCh10G011660 vs. TAIR10
Match: AT5G46230.1 (AT5G46230.1 Protein of unknown function, DUF538)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-34
Identity = 67/141 (47.52%), Postives = 101/141 (71.63%), Query Frame = 1 

Query: 2   SVATEEIKAKGAEVYKGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGYVWLKQ 61
           S  T+  + +GAE+  G+  C++K+KE+L  + LP GLLPL ++ E G  + TGYVW+K 
Sbjct: 3   SQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWIKI 62

Query: 62  KKNTTHKFEKIGKLVSYATEVTAVVEKNRIKKLTGVKTKELLIWVSLSDIYVDDPPTGKI 121
           K    H+F+ IG+ VSY +EVTA++E  R+ +LTG+K+KE+LIWV++S+I+V+     +I
Sbjct: 63  KNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPTQI 122

Query: 122 TFQTPAGLFRTFPVSAFQVEE 143
           TF  P GL RTFPV+AF+ +E
Sbjct: 123 TFANPTGLSRTFPVTAFEEDE 143

[Close]
BLAST of CmaCh10G011660 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 607.8 bits (1566), Expect = 1.7e-170
Identity = 297/321 (92.52%), Postives = 304/321 (94.70%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 236
           M KKRKHSET+P VSVKKD+ A ER KRTL GWKDKEVT KSE+ SDHAVFRNKEKVLVT
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 237 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 296
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 297 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEI 356
           DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKE+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEM 180

Query: 357 IVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGG 416
           I        +QIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKVARGG
Sbjct: 181 I--------IQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGG 240

Query: 417 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 476
           LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA
Sbjct: 241 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 300

Query: 477 KTRRKMHELSNPLEPDEFADM 498
           KTRRKMHELSNPLEPDEFADM
Sbjct: 301 KTRRKMHELSNPLEPDEFADM 313

[Close]
BLAST of CmaCh10G011660 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 589.7 bits (1519), Expect = 4.8e-165
Identity = 290/321 (90.34%), Postives = 299/321 (93.15%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 236
           M KKRKHSE+LP VSVKKDD APER KRTL GWKDK+VT + E  SDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 237 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 296
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 297 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEI 356
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGSRPILTFSSNFDKD H KLLKE+
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGSRPILTFSSNFDKDVHXKLLKEM 180

Query: 357 IVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGG 416
           I        +QIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKVARGG
Sbjct: 181 I--------IQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGG 240

Query: 417 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 476
           LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA
Sbjct: 241 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 300

Query: 477 KTRRKMHELSNPLEPDEFADM 498
           KTRRKMHELSNPLEPDEFADM
Sbjct: 301 KTRRKMHELSNPLEPDEFADM 313

[Close]
BLAST of CmaCh10G011660 vs. NCBI nr
Match: gi|763778551|gb|KJB45674.1| (hypothetical protein B456_007G319600 [Gossypium raimondii])

HSP 1 Score: 560.8 bits (1444), Expect = 2.4e-156
Identity = 273/327 (83.49%), Postives = 298/327 (91.13%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKE-VTTKSESDSDHA-VFRNKEKVL 236
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE V  ++ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 237 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 296
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 297 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLK 356
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDAHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 357 EIIVQVA----MEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESD 416
           E+I+Q +       F QIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESD
Sbjct: 181 EMIIQFSDTFFSIIFFQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESD 240

Query: 417 KVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKY 476
           K+ RGGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY
Sbjct: 241 KMVRGGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKY 300

Query: 477 SKKVKAKTRRKMHELSNPLEPDEFADM 498
           +KKVKAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 AKKVKAKTRRKMHELSNPLEPDEFADM 327

[Close]
BLAST of CmaCh10G011660 vs. NCBI nr
Match: gi|823198009|ref|XP_012434459.1| (PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii])

HSP 1 Score: 557.8 bits (1436), Expect = 2.0e-155
Identity = 271/323 (83.90%), Postives = 295/323 (91.33%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKE-VTTKSESDSDHA-VFRNKEKVL 236
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE V  ++ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 237 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 296
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 297 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLK 356
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDAHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 357 EIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 416
           E+I+Q        IFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ R
Sbjct: 181 EMIIQ--------IFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVR 240

Query: 417 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 476
           GGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKV
Sbjct: 241 GGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKV 300

Query: 477 KAKTRRKMHELSNPLEPDEFADM 498
           KAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 KAKTRRKMHELSNPLEPDEFADM 315

[Close]
BLAST of CmaCh10G011660 vs. NCBI nr
Match: gi|590608740|ref|XP_007021346.1| (Ribosome biogenesis protein brix, putative [Theobroma cacao])

HSP 1 Score: 554.7 bits (1428), Expect = 1.7e-154
Identity = 271/324 (83.64%), Postives = 288/324 (88.89%), Query Frame = 1 

Query: 177 MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVT---TKSESDSDHAVFRNKEKV 236
           M KKRK SET  A    KD+ APER KRTL GWKDKE     T+S  DS   VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 237 LVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECR 296
           +VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVES+S+KGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 297 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDAHWKLL 356
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+KDAHWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 357 KEIIVQVAMEKFVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVA 416
           KE+I+Q        IFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ 
Sbjct: 181 KEMIMQ--------IFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMV 240

Query: 417 RGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKK 476
           RGGLDKMTL+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KK
Sbjct: 241 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKK 300

Query: 477 VKAKTRRKMHELSNPLEPDEFADM 498
           VKAKTRRKMHELSNPLEPDEFADM
Sbjct: 301 VKAKTRRKMHELSNPLEPDEFADM 316

The following BLAST results are available for this feature:
BLAST of CmaCh10G011660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BRX1_BOVIN1.4e-6348.06Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1[more]
BRX1_XENLA1.8e-6343.17Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1[more]
BRX1_HUMAN6.9e-6343.18Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2[more]
BRX1_RAT9.0e-6345.88Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1[more]
BRX1_YEAST2.0e-6243.21Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
BLAST of CmaCh10G011660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2SNA9_GOSRA1.7e-15683.49Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1[more]
A0A0D2PI01_GOSRA1.4e-15583.90Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1[more]
A0A0B0NEE6_GOSAR1.4e-15583.90Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1[more]
A0A061F737_THECC1.2e-15483.64Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4... [more]
A0A067JSR7_JATCU1.2e-15183.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22878 PE=4 SV=1[more]
BLAST of CmaCh10G011660 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15460.12.3e-14979.44 Ribosomal RNA processing Brix domain protein[more]
AT1G52930.14.1e-14677.30 Ribosomal RNA processing Brix domain protein[more]
AT1G56580.11.9e-5064.56 Protein of unknown function, DUF538[more]
AT1G09310.14.6e-4962.28 Protein of unknown function, DUF538[more]
AT5G46230.12.5e-3447.52 Protein of unknown function, DUF538[more]
BLAST of CmaCh10G011660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099573|ref|XP_008450669.1|1.7e-17092.52PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo][more]
gi|778662534|ref|XP_011659901.1|4.8e-16590.34PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s... [more]
gi|763778551|gb|KJB45674.1|2.4e-15683.49hypothetical protein B456_007G319600 [Gossypium raimondii][more]
gi|823198009|ref|XP_012434459.1|2.0e-15583.90PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii][more]
gi|590608740|ref|XP_007021346.1|1.7e-15483.64Ribosome biogenesis protein brix, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004154Anticodon-bd
IPR007109Brix
IPR007493DUF538
IPR026532BRX1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G011660.1CmaCh10G011660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004154Anticodon-bindingunknownSSF52954Class II aaRS ABD-relatedcoord: 232..439
score: 3.92
IPR007109Brix domainPFAMPF04427Brixcoord: 238..435
score: 3.4
IPR007109Brix domainSMARTSM00879Brix_2coord: 234..436
score: 8.7
IPR007109Brix domainPROFILEPS50833BRIXcoord: 231..442
score: 31
IPR007493Protein of unknown function DUF538GENE3DG3DSA:2.30.240.10coord: 10..143
score: 4.2
IPR007493Protein of unknown function DUF538PFAMPF04398DUF538coord: 27..139
score: 7.4
IPR007493Protein of unknown function DUF538unknownSSF141562At5g01610-likecoord: 10..143
score: 2.88
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 178..497
score: 7.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G011660Cucsa.090520Cucumber (Gy14) v1cgycmaB0176
CmaCh10G011660Cucsa.050810Cucumber (Gy14) v1cgycmaB0053
CmaCh10G011660Cla010961Watermelon (97103) v1cmawmB059
CmaCh10G011660Csa1G555620Cucumber (Chinese Long) v2cmacuB053
CmaCh10G011660Csa2G034670Cucumber (Chinese Long) v2cmacuB074
CmaCh10G011660MELO3C015251Melon (DHL92) v3.5.1cmameB068
CmaCh10G011660ClCG02G014780Watermelon (Charleston Gray)cmawcgB053
CmaCh10G011660ClCG01G010880Watermelon (Charleston Gray)cmawcgB051
CmaCh10G011660CSPI01G25510Wild cucumber (PI 183967)cmacpiB054
CmaCh10G011660CmoCh10G012440Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G011660Lsi02G011500Bottle gourd (USVL1VR-Ls)cmalsiB055
CmaCh10G011660Cp4.1LG18g00120Cucurbita pepo (Zucchini)cmacpeB081
CmaCh10G011660MELO3C015251.2Melon (DHL92) v3.6.1cmamedB071
CmaCh10G011660CsaV3_1G037930Cucumber (Chinese Long) v3cmacucB0062
CmaCh10G011660Cla97C01G010630Watermelon (97103) v2cmawmbB055
CmaCh10G011660Bhi02G001671Wax gourdcmawgoB0090
CmaCh10G011660Carg27422Silver-seed gourdcarcmaB1039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G011660Cucurbita pepo (Zucchini)cmacpeB097
CmaCh10G011660Bottle gourd (USVL1VR-Ls)cmalsiB076
CmaCh10G011660Cucumber (Gy14) v2cgybcmaB008
CmaCh10G011660Cucumber (Gy14) v2cgybcmaB016
CmaCh10G011660Watermelon (97103) v2cmawmbB061
CmaCh10G011660Wax gourdcmawgoB0079
CmaCh10G011660Cucurbita maxima (Rimu)cmacmaB085
CmaCh10G011660Cucurbita moschata (Rifu)cmacmoB079
CmaCh10G011660Watermelon (Charleston Gray)cmawcgB055
CmaCh10G011660Watermelon (97103) v1cmawmB047