Cp4.1LG18g00120 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosome biogenesis BRX1
Location	Cp4.1LG18 : 271577 .. 278771 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACCATCCGAAATTTCTATTATTCTAAACCCTATTTCACGTCCCCGCCACACCACCCTCCCATTACCAGCCACTGCACCCCGCCCCCACGGTCGCCTCACGCCGCTCCTGTCCGACGTCGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTGCAGTATCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTCGGTGAGTTCGTGCCGACCCTTACGCGCGCTGCCGCTCGATTTTCAGATACTTAGGTGTTGATTTTTTGTTTGATTCTTTACTTTGTTTCGTTGGTTGATGTTGACTTGTTTGGTTTCGTTGTTGATTTCTTCTTCAACCAATGTTGAACTAAGAACGTATGCATTACAGAGTAGAGAAAGGACAGATTGAATAACTAAATTAAAGGAACAACAAGACGTATTATTCTTCANGTTGTCACTCTTTCCTTCTTCCAATCGTTGTGGAACTGCCCCCAAATCCACCCCTTTTGGGGCCAGCGTCCTTATTGGCATACTGCCTCGTGTCTACCCCCTTCGGGGAACAGCGAGAAGGCTGACACATCGTCCAGTGTCTGACTCTGATACCATTTGTAACGTCCCATATCCACGTCCACGGCTAGCAGATATTGTCCTCTTTGGTCTATATATATATATATAATTTTGAGACTCTATTTTTTAAAATTCAACTATATATATATTTTTAAATAATACTTTTATTTTTTTTTTAAAGATTTTATTAATGAAAATTATAAAAATTATAATATTTTTATACATTTAGCCTTTTATCCTTTTAACCTTTTTTTTTTTGTTAACCTCCATTACTTGATTTTAAGTGTAGTATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTACCGGTTAAGAAGGATGATGTTGCCCCCGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTCAGGTATGAAATATAGACAGGTCAATTTGACTTGCATACTTACATATGGAACATGAACACTTGAATCAATTGGGCTGCTGATAGTTTCCAGATTTTTATATGATACAAAAATTCTTATTTCATTTTCTCTTCTGGTACAAGGTGTAATCCATTAATGTAATCTTTAATTCACTTGTTAGTTTAGTAATATGATTGGTGAAGTTAAAGAAAGTAAGAAGCGTTTATTGTAATTGTACTTTGTGTTATACTGTTCTAGTGCTCTTTAAGTCGATATTTATTGATTTCCCTGCAAGAAGAACACGGTTCAAATGCAATGTAGAGTAGGTTTAAGAGGAAAACCAAGAACGATTTTGATGAATGCTGTCATAGCTTTACATGGGCTATGTAATTAGAAAGAAATAGTTGATATTGATTGACTGCCTCCATTATGTTCTTGCTAGCAAATACCACTACTTTTGTTTTGGATCTTCCAAATCATTCCCGTGGGACGTCCGGACCCTTTCTTTTTTCTGATCCTTCGATAAAACGATTCATTCTCTTCTTAAAAAATAGGAGGTAGAACCAATAAATATTTTTTTTTCGATTCATCCCGGGAGTTAAATACCTCATTCAAGAATTGTGTTTTTGATCTTTCCTTTTGGTGTTCACTCTCTACACCTTTCTGTTGTTACATCATTTTAGTTGAAATACGTTGGTGTAGCTTTTTGTAAAATCTTTCAAGAGATATATACAGGGTCAGTTAGTTAGTGATGCAACATTTCACTCAGGATTAGAAAGTAGTGATGTAACTTTTCACTCATCATTAAAAAGTTTGTCTTCCTTGAGAGTCGTGGTGATTTTATTAAACCTTTGTGATTGATTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACGCTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGGTTAGAACCTTTTCTTTTCACCTTGTCCATGTCAAACTTGGAATTCAATTCATAATCGGGAATTTGTTTGATACAAGGTAGGATGATAATTTTTTTGCTTCTGTTGTGTTGTAAGGATGCACTAAATTTCCATTTCTTTTCATTCTATTATCATCCTTGCTGCCTTTTCATCAAGTTTTTCCACTCGTTCTGTAACAACAACTTTGAATTAATTTTTGCGTTCTTGATTTGTAAATGTCTTTTTGTCCCCTGGATTTTGATCCTTCAAAGTCGAATTAATCGTTTTATTTCCAAAGCTTATTGCAAGAATTTTCAGTTCTTTTTCTTTCTGTTGTTATTATTTCTAAATTTTACATGCTTTATAGCATTCACAGGAGTTTACTTATTGATCTTTTTGTCTATACTTCCAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGGTAATTTTAATGTGCAATCAAATCTTATTACTCGATTTCATGGCAGAAGTTGTATTGGATTTCTTAATTAAATACAGTTTGCTTACTTTTCCATTGTTTTTTTTCAGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGATGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTATCAATGGAAAAGTTTTTTCAAGTAATTCAATTTTGAACTATTTTCATTTTTTTGAAAAAGAAAACGTATTTCATTGTTGTATGAAATGGGAAAAGGAGTAAAAAACTTGAAACATGAAAAGGTGGATTATAAGAAACTTCTCCAATTTGTAAGTAACGAGCAAAGGCTATAAACTCTAAATGGATATTTACACTTTGCACCTAGCAAGCACAAACATGGGTACAATGTTACATCAATTTTAAAAAAGTTGGACATATATATATATATTTATATAAAATGTATATGTATATATTGACATATTAATAGTTCTTTACTAATAAAACATGTAAATTTAATTTAAAAACAAAGTATACTTACTCAAAACATACAAAGTTAAGTCATTAATGATATTTAAATTCTTAATGATATCAAGGGATCTAGTGGGCTATAACTTGAGAAGAATATGTCATCCTAATACTTTAGAATTGATCGATGTATAAGGATTCAATTTATAAGAAGATATCTTTTTCTTTTACCTTATTCGTATGTTAAATATTTTTTCAGAGCCATGTCCAAAATTAGAAAAAATATATTTATTTTAGACATGTTTTTAACATGTCAAACACATGCCCGAAGCGTGTCAGGACCTGTCTGAAAATAATAAAATAATGTTTGCACGACTATAGTTCAATTATATTCTTTCATTCTTCTTTATGNAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAGAAAAAATGTAAATGCTCATCTTTCATGTAAAATATACTATGAGATAAGAATATGGATTAGTCAATACTTGTGCCCGATTTCATATTTTTATGCTGGTTCCCAATACTGTCATTCCCTTATTATGCTGCCTTTATTTATTTCCTGATTTAGGTGGTCATATTAGTTTGATTTGCTGCCTGTTTACTATGTTGTGAAAAATAATTGTGGATTGTAGTTGCTTCTCCAAATAATGGCGTTCTTGTTTACAAATCCTATGTAGTCTCATCTTAATTTGTCATAATTTTAGCTTAAAATGTTTTTCCCCCCAGATTTTTGGAACTCCGAAGGAACATCGACATTCGAAGCCATACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGGTATGGTTTATTTATATTTTTACCTGTTACTGAATTTAATTCTCTCAATCGTTGGTTGCATCCAAATACACAACTTCCACATTTCATGCAAATCATGTACTTGATCCTGTCCTTTCTGTTAAGTGTGAGCAAGAACTTTATCCATTTCTGGATCGTCTGCTTTCTTTTCTTTTTTGGTCTCAAAACAAGAAAGTTTTCGAAGTTCGGGTGCCTATTTAAAAGGTGTAGCTTGAGTGCAAAGTATGGGGACCTGAGGGACAATGTGTGTTTTTGGTCAAGTAGTGTCTACCAGGATACATTAGATTGGAGGGGCTTGAGATTAAGCAAATTTTGGCGAATAATTTTTTGGGAGAGCCCAGGTTTCTCTCGTCCATATGTCAACAAAACTTTATTAATTTTTAGTTCAATTTCTAGTACCTATCAGATTTCTTAGTCCATTTTCATATAATTGTTGGTATAAGTTCTCGCTCGGGGGTTGCGTGGGCGTGTCATCCCCAAAGAACCATTACTTAATGATATGGCTTTGTCTTCTTTGTTTGGTGTGATCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTTATTAAACTTCCTCTCCCCTTAGTCTATAAATGAGTATTCACAATTTTCGGTTAACTTAAAAAATTTATATTTTACAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGGTTAGACGACTCAACTTTTTGATGATTTGGGATTACACTTCTTCACTATGCCTCTACAATATATCTGAGGGCTTTCTGAGGAGGCATTAGCTGCTATGCTTTTATGGTTTCTCTAAGTTCATTTTGTACAAGAGAACTGAAGTATAGGCATTACAGAAAAAGAATGTCATTTCAAAGGCCAATTATTCGTTATCTTTTTCAATTTAAGGTTCTTTGAGAACTGATCTGCTCATCTAATTTACCATTATGCTTTTAGTAATGTTTTTTCTATTCATGGTTGAATACCTGGAATTGCAATATTCTCTTGCATTCTTTGAAGAACACTAGTAGTGGGAGGTGAGAGGATTAGTGGGAGGTGAGAGGATTGTTGAGAGGGAGTCTCACGTTTGCTAATTAGGGAATAGGGAATGATCCTGAGTTTATAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGAGAAACCAAAAGCAAGACCACGAGAGCTTATTCTCAAAGTGGACAATATCAATACCATTGTGGAGGTATGTGTTTCCTAACATAGAATACTCAAATGTCGAACAAAGAAATTGTGAGCTTCGAAAGTGTGGTCAAAAGTGACTCAAAGTGTCGAACAAAGGGTGTATTTTGTTCGAGGACTCCAGAGAAGGAGTCGAGTCTCGATCAAGGGGAGGCTGTTCCAGGGCTCCATAGGCTTTAGGGGATGCTCTATAGTGTATTTTGTTCGAGGGGAGGATTGTTGAGAGGGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGATTTATAAGTAAGGAATACATCTCAATTGGTATGAGACCTTTTGGAGAAACTAAAAGTAAAACGATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGGTCTGTAATTCCTAACAAGCAGCTCATCTGATCTACGAACAGATGGAACCAAGTTCTATAATTTGAGCTTTAACAATTAGACATAGACTTGCTCATGTTTTTGACGTCTCTCTGTAGATTCGAGCATTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAGTCTTTGCATGGACTTCATCTTGTCTAGACTCAAAATTAAAGTTTGCTGATATGTGGAAGGAATAGTCTTTTCTGAAAGGGAAAGCCTAAAGAGAACAATATCTGCTAGTGGTGGATCTGGGCCGTTACAATAAATTTTCTAGTTACTCTAGATCGTCTGGATTTTGGTCATGATCTTCTACACGACCTCATTGGTTACTTGCACAAACTCTAGTCCTAACAATTTGCATTCACTTCTACATGACCTCATTGGTTACTTGCCCAAACTCTAGTCCTAACAATTTGCATTCACCTACTTCATCCCAATATACTAGGAACTTGCACCGTTTTTCATACAAGGTCTCCGCACAATTCCATGCCAATAGTTTCTTGGAAACTATTGTTGTACGCGAATTGCAATTTGGTGTCCCAATTACCTAATAAATCCAAAATGTAGACACAAAAATCCTACCAGTGTTTGGTTTAGATGTTCAGTTTGTCTATTTGTCCGTGAATAGCAGACTAAAACCCAACCGGGTACTTGAAACTTGTGAAGAGTGGGTTCCAATCCGACACATTGGCTTTCCATGTAGTTTGACAATCTTATTCGTGCCTAACAGGAAATGTGTAGACTTAGTAAACCCGTAGATCGCCCATATCACCCTATAGCCTTTCAAAGTTCTTAGTGGACCTAGGATGAAATTCATTGTTATGTTCTTTCATTTTCACTATGAGATGCCTTGAGGTTTCAGGAACCCCACGGTTCTTTGTTTCAGTGTCTTAACCTATTACAAATCATACATTTGCTTATGAACTCTGCTATATATTTCATGTTGTGCCAATAAAAGTGTTGTTTGAGATCTTGGTACATCTTAGTATCCATTGGATGCATGAAAAATAATGGATTATGTGTTTTCGTTAGTATCTCATTCCTCAGCTCATCATCTACTGGTACACATAAACGTCATTGACAGAGAAGTTCGTCATTCGCAAATTGAAAAAAAACTGTCAGTACTTCCCAGGAGGTCCCAGCGTAAGTTGACTTATAATCTTTAGAAGATTGAGACGCCCCAATCTATAATTCACTGCCATAGAGTCGTCTCGAATGTGATATGTGCAATAATTTCACCAACCGTCGTTGCTATATGTGCTCCTTCCAAGCCAAAAACTTGTCTTATTGTTGGTGATCATAGTTGATGAATGAATTGTCTTTCTGCTTAGGACATCAACAGCCACATTTGTCTTCTCTGTGTCGTACTGTATATCTACATTGTA

mRNA sequence

TAACCATCCGAAATTTCTATTATTCTAAACCCTATTTCACGTCCCCGCCACACCACCCTCCCATTACCAGCCACTGCACCCCGCCCCCACGGTCGCCTCACGCCGCTCCTGTCCGACGTCGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTGCAGTATCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTCGGTGAGTTCGTGCCGACCCTTACGCGCGCTGCCGCTCGATTTTCAGATACTTAGTATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTACCGGTTAAGAAGGATGATGTTGCCCCCGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTCAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACGCTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCATTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAGTCTTTGCATGGACTTCATCTTGTCTAGACTCAAAATTAAAGTTTGCTGATATGTGGAAGGAATAGTCTTTTCTGAAAGGGAAAGCCTAAAGAGAACAATATCTGCTAGTGGTGGATCTGGGCCGTTACAATAAATTTTCTAGTTACTCTAGATCGTCTGGATTTTGGTCATGATCTTCTACACGACCTCATTGGTTACTTGCACAAACTCTAGTCCTAACAATTTGCATTCACTTCTACATGACCTCATTGGTTACTTGCCCAAACTCTAGTCCTAACAATTTGCATTCACCTACTTCATCCCAATATACTAGGAACTTGCACCGTTTTTCATACAAGGTCTCCGCACAATTCCATGCCAATAGTTTCTTGGAAACTATTGTTGTACGCGAATTGCAATTTGGTGTCCCAATTACCTAATAAATCCAAAATGTAGACACAAAAATCCTACCAGTGTTTGGTTTAGATGTTCAGTTTGTCTATTTGTCCGTGAATAGCAGACTAAAACCCAACCGGGTACTTGAAACTTGTGAAGAGTGGGTTCCAATCCGACACATTGGCTTTCCATGTAGTTTGACAATCTTATTCGTGCCTAACAGGAAATGTGTAGACTTAGTAAACCCGTAGATCGCCCATATCACCCTATAGCCTTTCAAAGTTCTTAGTGGACCTAGGATGAAATTCATTGTTATGTTCTTTCATTTTCACTATGAGATGCCTTGAGGTTTCAGGAACCCCACGGTTCTTTGTTTCAGTGTCTTAACCTATTACAAATCATACATTTGCTTATGAACTCTGCTATATATTTCATGTTGTGCCAATAAAAGTGTTGTTTGAGATCTTGGTACATCTTAGTATCCATTGGATGCATGAAAAATAATGGATTATGTGTTTTCGTTAGTATCTCATTCCTCAGCTCATCATCTACTGGTACACATAAACGTCATTGACAGAGAAGTTCGTCATTCGCAAATTGAAAAAAAACTGTCAGTACTTCCCAGGAGGTCCCAGCGTAAGTTGACTTATAATCTTTAGAAGATTGAGACGCCCCAATCTATAATTCACTGCCATAGAGTCGTCTCGAATGTGATATGTGCAATAATTTCACCAACCGTCGTTGCTATATGTGCTCCTTCCAAGCCAAAAACTTGTCTTATTGTTGGTGATCATAGTTGATGAATGAATTGTCTTTCTGCTTAGGACATCAACAGCCACATTTGTCTTCTCTGTGTCGTACTGTATATCTACATTGTA

Coding sequence (CDS)

ATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCAGTACCGGTTAAGAAGGATGATGTTGCCCCCGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTCAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACGCTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCATTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAG

Protein sequence

MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFADMWKE

Homology

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BLAST of Cp4.1LG18g00120 vs. Swiss-Prot
Match: BRX1_DROME (Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster GN=CG11583 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-33
Identity = 98/293 (33.45%), Postives = 155/293 (52.90%), Query Frame = 1


Query: 3   KKRKHSETLPAVPVKKDD-VAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVTC 62
           KK+K +  L  VP+ ++  + P+RS        D  V  K+  +     + NK++VLV  
Sbjct: 8   KKKKAAPQLEIVPLDENPPLPPQRSS-------DDVVPKKARKEK----WVNKQRVLVFS 67

Query: 63  SRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHKD 122
           +R I+ R RHLM ++ +L+PH + ++K+E RS   + +NE+ E+K C+ ++ FE R+ +D
Sbjct: 68  ARGISHRDRHLMKDIKTLMPHHRPESKME-RSKTLSVVNEMCEMKHCNKAMLFEGRRKRD 127

Query: 123 LYLWMAKC--PSGPSVKFLVNAVHTMEELKLTGNHLKDD--------------------H 182
           LY+W++     +GPS KFL+  +HTM ELK+TGN L+                       
Sbjct: 128 LYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKE 187

Query: 183 IWFRNYQIAVPHNESDKVAR-----GGLDKMT-------------LIEVGPRFCLNPIKI 242
           ++ + Y +   H +S            LDK               L EVGPR+ +NP+KI
Sbjct: 188 LFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGLSEVGPRYVMNPVKI 247

Query: 243 FGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPL 255
           F GSF G T++ENP YVSP++ R + KK    KY  +V+ K +   HE + P+
Sbjct: 248 FDGSFTGKTIWENPDYVSPSKQRQVLKKAAKDKYVNRVEQKVK---HEATRPI 285

[Close]

BLAST of Cp4.1LG18g00120 vs. Swiss-Prot
Match: BRX1_YEAST (Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 51/106 (48.11%), Postives = 78/106 (73.58%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 110
           F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++++      LNE+ EL  C++
Sbjct: 27  FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 86

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
            LFFE RKH+DLYLW++K P+GP++KF +  +HTM+EL  TGN LK
Sbjct: 87  VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLK 131

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BLAST of Cp4.1LG18g00120 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 52/106 (49.06%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 110
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LK
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLK 160

[Close]

BLAST of Cp4.1LG18g00120 vs. Swiss-Prot
Match: BRX1_MOUSE (Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1


Query: 3   KKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVTCS 62
           KK K S      P K+ DVA E          ++E   +         ++NKE++L+  S
Sbjct: 17  KKPKRSSKDAGQPAKQADVAKEA---------EEENRDRIPGPVCKGKWKNKERILIFSS 76

Query: 63  RRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHKDL 122
           R INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+  ++FE +K +DL
Sbjct: 77  RGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQDL 136

Query: 123 YLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           Y+W++  P GPS KFLV  +HT+ ELK+TGN LK
Sbjct: 137 YMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLK 160

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BLAST of Cp4.1LG18g00120 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 52/106 (49.06%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 110
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LK
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLK 160

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BLAST of Cp4.1LG18g00120 vs. TrEMBL
Match: A0A0K9RNU9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051010 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.6e-105
Identity = 207/324 (63.89%), Postives = 227/324 (70.06%), Query Frame = 1


Query: 1   MVKKRKHSETLPA----VPVKKDDVAPERSKRTLTGWKDKEVITKSE----SDSDHAVFR 60
           M KKRKH ETL A       KK+DVAPER KRTL GWKDK      E     ++   VFR
Sbjct: 1   MGKKRKHVETLAAEAAAAEAKKNDVAPERPKRTLVGWKDKPQEDDEERENGGEAHPRVFR 60

Query: 61  NKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSL 120
           NKEKVL+TCSRRINFRYRHLMLN+ SLLPH K+DNKVES+ +KGATLNELVELK CSS L
Sbjct: 61  NKEKVLITCSRRINFRYRHLMLNVASLLPHSKRDNKVESKESKGATLNELVELKNCSSCL 120

Query: 121 FFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKDDH--IWFR------- 180
           FFECRKHKDLYLWMAK P+GPSVKFLVNAVHTMEELKLTGNHLK     + F        
Sbjct: 121 FFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKEP 180

Query: 181 ------------------------------------------NYQIAVPHNESDKVARGG 240
                                                     NYQI VPHNE  K+ RGG
Sbjct: 181 HWKLLKELMLQIFQIPKEHRKSKPFHDHVFAFSILDDHIWFRNYQITVPHNEPTKMDRGG 240

Query: 241 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 266
           LDKMTL EVGPRFCLNPIKIFGGSFGGPTLYENP Y+SPNQIR+L+KK+KAG+Y +KVKA
Sbjct: 241 LDKMTLTEVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNQIRSLQKKKKAGRYVQKVKA 300

[Close]

BLAST of Cp4.1LG18g00120 vs. TrEMBL
Match: A0A0D3ADF3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-74
Identity = 171/305 (56.07%), Postives = 195/305 (63.93%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDK-EVITKSESDSDHAV-FRNKEKVL 60
           M KKRKHSET  A P KKDD APER KRTL GWKDK E   +S++ +  A  FRNKEKVL
Sbjct: 1   MGKKRKHSETEAAAPAKKDDSAPERPKRTLLGWKDKNEDAEESKAKAASASGFRNKEKVL 60

Query: 61  VTCSRRINFRYRHLMLNMVSL-----------------LPHCKKDNKVES-----RSTKG 120
           VTCSRRI+FRYRHLMLNMVSL                 LP C      +      +S  G
Sbjct: 61  VTCSRRISFRYRHLMLNMVSLRAVKAQLLMSLLSLRALLPACFSRKHKDLYMWMVKSPSG 120

Query: 121 ATLNELVE--------------LKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAV 180
            ++  LV               LKG    L F     KD++  + K       + L    
Sbjct: 121 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDVHWKLLK-------EMLTQVF 180

Query: 181 HTMEELKLTGNH--------LKDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIEVGPRF 240
              +E + +  +        + DDHIWFRNYQI+VPHNE+DKVARGGLDKMTL+EVGPRF
Sbjct: 181 GIPKEHRKSKPYHDHVFAFSIVDDHIWFRNYQISVPHNEADKVARGGLDKMTLVEVGPRF 240

Query: 241 CLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPL 260
           CLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+ KAGK++KKVKAKTRRKMHELSNPL
Sbjct: 241 CLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRNKAGKFAKKVKAKTRRKMHELSNPL 298

[Close]

BLAST of Cp4.1LG18g00120 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.1e-66
Identity = 128/158 (81.01%), Postives = 144/158 (91.14%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITK-SESDSDHA-VFRNKEKVL 60
           M KKRKHSET  A P KKD+ APER KR+L GWKDKE + + +ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLK 158

[Close]

BLAST of Cp4.1LG18g00120 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.1e-66
Identity = 128/158 (81.01%), Postives = 144/158 (91.14%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITK-SESDSDHA-VFRNKEKVL 60
           M KKRKHSET  A P KKD+ APER KR+L GWKDKE + + +ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLK 158

[Close]

BLAST of Cp4.1LG18g00120 vs. TrEMBL
Match: A0A0D2SNA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.1e-66
Identity = 128/158 (81.01%), Postives = 144/158 (91.14%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITK-SESDSDHA-VFRNKEKVL 60
           M KKRKHSET  A P KKD+ APER KR+L GWKDKE + + +ES++D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLK 158

[Close]

BLAST of Cp4.1LG18g00120 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64
Identity = 120/156 (76.92%), Postives = 135/156 (86.54%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVT 60
           M +KRKHSET+ A PVK  D APER +RTL GWKDK+   ++   +  +VFRNKEKVLVT
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++S++GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           DLY+WM K P GPSVKFLVNAVHTMEELKLTGNHLK
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLK 154

[Close]

BLAST of Cp4.1LG18g00120 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.7e-58
Identity = 113/161 (70.19%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKK-DDVAPERSKRTLTGWKDKEVITKSESDSDHAV----FRNKE 60
           M +KRKHSET    PVKK D+ AP+R KRTL GWKDK   ++ E++   A+    F+NKE
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDK---SEGEAEKAKALTSSGFKNKE 60

Query: 61  KVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFE 120
           KVLVTCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++S+KGATLNEL+ELK  +S LFFE
Sbjct: 61  KVLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFE 120

Query: 121 CRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           CRKHKDLY+WM K P+GPSVKFLV AVH MEE+KLTGNHLK
Sbjct: 121 CRKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLK 158

[Close]

BLAST of Cp4.1LG18g00120 vs. NCBI nr
Match: gi|902227145|gb|KNA20589.1| (hypothetical protein SOVF_051010 [Spinacia oleracea])

HSP 1 Score: 389.8 bits (1000), Expect = 3.8e-105
Identity = 207/324 (63.89%), Postives = 227/324 (70.06%), Query Frame = 1


Query: 1   MVKKRKHSETLPA----VPVKKDDVAPERSKRTLTGWKDKEVITKSE----SDSDHAVFR 60
           M KKRKH ETL A       KK+DVAPER KRTL GWKDK      E     ++   VFR
Sbjct: 1   MGKKRKHVETLAAEAAAAEAKKNDVAPERPKRTLVGWKDKPQEDDEERENGGEAHPRVFR 60

Query: 61  NKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSL 120
           NKEKVL+TCSRRINFRYRHLMLN+ SLLPH K+DNKVES+ +KGATLNELVELK CSS L
Sbjct: 61  NKEKVLITCSRRINFRYRHLMLNVASLLPHSKRDNKVESKESKGATLNELVELKNCSSCL 120

Query: 121 FFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKDDH--IWFR------- 180
           FFECRKHKDLYLWMAK P+GPSVKFLVNAVHTMEELKLTGNHLK     + F        
Sbjct: 121 FFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKEP 180

Query: 181 ------------------------------------------NYQIAVPHNESDKVARGG 240
                                                     NYQI VPHNE  K+ RGG
Sbjct: 181 HWKLLKELMLQIFQIPKEHRKSKPFHDHVFAFSILDDHIWFRNYQITVPHNEPTKMDRGG 240

Query: 241 LDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKA 266
           LDKMTL EVGPRFCLNPIKIFGGSFGGPTLYENP Y+SPNQIR+L+KK+KAG+Y +KVKA
Sbjct: 241 LDKMTLTEVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNQIRSLQKKKKAGRYVQKVKA 300

[Close]

BLAST of Cp4.1LG18g00120 vs. NCBI nr
Match: gi|848901167|ref|XP_012850743.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Erythranthe guttata])

HSP 1 Score: 306.2 bits (783), Expect = 5.5e-80
Identity = 173/318 (54.40%), Postives = 202/318 (63.52%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAV-FRNKEKVLV 60
           M KKRK SE      V +++   ER KRTL G+KDK    K   ++   V FRNKEKVLV
Sbjct: 1   MGKKRKQSERAAPAAVVEEENVEERPKRTLFGFKDKPEEKKEGDENPQTVGFRNKEKVLV 60

Query: 61  TCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKH 120
           TCSRRI++RYRHLMLN+V LLPHCKKDNKVE++ +KGA LNELVELK CSS LFFECRK 
Sbjct: 61  TCSRRISYRYRHLMLNLVDLLPHCKKDNKVEAKGSKGAALNELVELKSCSSCLFFECRKG 120

Query: 121 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKDDHIWFRNYQIAVPHNESDKVAR 180
           KDLY+WM+KCP+GPSVKFLVNAVHTMEELKLTGNHLK          I    ++ DK   
Sbjct: 121 KDLYMWMSKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSR------PILTFSSDFDKSPH 180

Query: 181 GGLDKMTLIEVG-----PRFCL-----------------------NPIKIFGGS------ 240
             L K  + +VG      +FC                        + +K+  G       
Sbjct: 181 WQLLKEMITQVGIFNFEVQFCYILVYEVVDRHLIFFFLQISCPNNSQLKLERGDLDKMTL 240

Query: 241 ------------------FGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 266
                             FGGPTLYENP YVSPNQIR+LEK++KAGKY+KKVKAKTRRKM
Sbjct: 241 IEVGPRFCLNPIKMFGGSFGGPTLYENPFYVSPNQIRSLEKRKKAGKYAKKVKAKTRRKM 300

[Close]

BLAST of Cp4.1LG18g00120 vs. NCBI nr
Match: gi|743808909|ref|XP_010928454.1| (PREDICTED: ribosome biogenesis protein BRX1 homolog isoform X2 [Elaeis guineensis])

HSP 1 Score: 298.9 bits (764), Expect = 8.8e-78
Identity = 164/266 (61.65%), Postives = 189/266 (71.05%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVT 60
           M KKRKH E   A    K+  AP R +RTL GWK+ EV    E  SD  VFRNKEKVLVT
Sbjct: 1   MGKKRKHEEASEA---PKEKTAPTRPQRTLMGWKEGEV----EKKSDSPVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRI +RYRHLMLN+VSLLPHCKKD+KVES+ +KGATLNEL+EL+ CSS LFFECRK K
Sbjct: 61  CSRRITYRYRHLMLNVVSLLPHCKKDSKVESKESKGATLNELIELRNCSSCLFFECRKQK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKDDHIWFRNYQIAVPHNESDKVARG 180
           DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLK          I       DK    
Sbjct: 121 DLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSR------PILTFSTNFDKEPHW 180

Query: 181 GLDKMTLIEV-GPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 240
            L K  ++++ G        K F       ++ ++ ++    Q+RALEK++KAGKY+KKV
Sbjct: 181 KLLKEIIVQIFGTPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQVRALEKRKKAGKYAKKV 240

Query: 241 KAKTRRKMHELSNPLEPDEFADMWKE 266
           KAKTRRKMHE+SNPLEPDEFADMWKE
Sbjct: 241 KAKTRRKMHEMSNPLEPDEFADMWKE 253

[Close]

BLAST of Cp4.1LG18g00120 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 1.2e-74
Identity = 142/156 (91.03%), Postives = 146/156 (93.59%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVT 60
           M KKRKHSET+P V VKKD+ A ER KRTL GWKDKEV  KSE+ SDHAVFRNKEKVLVT
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 156

[Close]

BLAST of Cp4.1LG18g00120 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 1.4e-70
Identity = 136/156 (87.18%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 1   MVKKRKHSETLPAVPVKKDDVAPERSKRTLTGWKDKEVITKSESDSDHAVFRNKEKVLVT 60
           M KKRKHSE+LP V VKKDD APER KRTL GWKDK+V  + E  SDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLK 157
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLK
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLK 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRX1_DROME	3.9e-33	33.45	Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster GN=CG11583 P...	[more]
BRX1_YEAST	6.6e-25	48.11	Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
BRX1_HUMAN	6.6e-25	49.06	Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2	[more]
BRX1_MOUSE	6.6e-25	40.91	Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3	[more]
BRX1_PONAB	6.6e-25	49.06	Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g00120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0K9RNU9_SPIOL	2.6e-105	63.89	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051010 PE=4 SV=1	[more]
A0A0D3ADF3_BRAOL	1.1e-74	56.07	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D2PI01_GOSRA	3.1e-66	81.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]
A0A0B0NEE6_GOSAR	3.1e-66	81.01	Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1	[more]
A0A0D2SNA9_GOSRA	3.1e-66	81.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g00120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15460.1	1.5e-64	76.92	Ribosomal RNA processing Brix domain protein	[more]
AT1G52930.1	3.7e-58	70.19	Ribosomal RNA processing Brix domain protein	[more]

BLAST of Cp4.1LG18g00120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|902227145\|gb\|KNA20589.1\|	3.8e-105	63.89	hypothetical protein SOVF_051010 [Spinacia oleracea]	[more]
gi\|848901167\|ref\|XP_012850743.1\|	5.5e-80	54.40	PREDICTED: ribosome biogenesis protein BRX1-like [Erythranthe guttata]	[more]
gi\|743808909\|ref\|XP_010928454.1\|	8.8e-78	61.65	PREDICTED: ribosome biogenesis protein BRX1 homolog isoform X2 [Elaeis guineensi...	[more]
gi\|659099573\|ref\|XP_008450669.1\|	1.2e-74	91.03	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]	[more]
gi\|778662534\|ref\|XP_011659901.1\|	1.4e-70	87.18	PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026532	BRX1
IPR007109	Brix
IPR004154	Anticodon-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00120.1	Cp4.1LG18g00120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 56..204 score: 1.04
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 62..154 score: 3.2
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 58..201 score: 2.6
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 55..207 score: 15
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 2..265 score: 8.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g00120	CmaCh10G011660	Cucurbita maxima (Rimu)	cmacpeB081
Cp4.1LG18g00120	CmoCh10G012450	Cucurbita moschata (Rifu)	cmocpeB056
Cp4.1LG18g00120	ClCG01G010880	Watermelon (Charleston Gray)	cpewcgB317
Cp4.1LG18g00120	Carg27422	Silver-seed gourd	carcpeB1046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g00120	Cucumber (Chinese Long) v3	cpecucB0432
Cp4.1LG18g00120	Cucumber (Chinese Long) v3	cpecucB0446
Cp4.1LG18g00120	Wax gourd	cpewgoB0470
Cp4.1LG18g00120	Cucumber (Gy14) v1	cgycpeB0050
Cp4.1LG18g00120	Cucumber (Gy14) v1	cgycpeB0051
Cp4.1LG18g00120	Wild cucumber (PI 183967)	cpecpiB354
Cp4.1LG18g00120	Wild cucumber (PI 183967)	cpecpiB367
Cp4.1LG18g00120	Cucumber (Chinese Long) v2	cpecuB353
Cp4.1LG18g00120	Cucumber (Chinese Long) v2	cpecuB367
Cp4.1LG18g00120	Bottle gourd (USVL1VR-Ls)	cpelsiB290
Cp4.1LG18g00120	Bottle gourd (USVL1VR-Ls)	cpelsiB302
Cp4.1LG18g00120	Watermelon (Charleston Gray)	cpewcgB328
Cp4.1LG18g00120	Watermelon (97103) v1	cpewmB357
Cp4.1LG18g00120	Melon (DHL92) v3.5.1	cpemeB331
Cp4.1LG18g00120	Cucumber (Gy14) v2	cgybcpeB043
Cp4.1LG18g00120	Cucumber (Gy14) v2	cgybcpeB058
Cp4.1LG18g00120	Melon (DHL92) v3.6.1	cpemedB389