CmoCh10G012450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G012450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosome biogenesis BRX1
Location	Cmo_Chr10 : 12556155 .. 12564380 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAGTCGGCTCCTTGGTGGAATGTTGTAAGAGATCTTAAATTGAGTTACCTAAGCCATCAAAGTTGAGTTGGAGCCGAACCCACCCCGAACAGGGAGGGGATCAGGAATGGAGGATGAAGTGGAGAACATTTTTTCTCGGTTAGATAAAATAGGACTGGAAACAGAATTATATTCCTTGTCCTGTCCCCCACCCGGCTTAATATAAATATATTTTCAACCCATATAAAAAATATATTATATATAACGATAAACAAGGAAAAATTACCTCGGAAAGTCGATCTGTGCACATTTCTCACAGAGAATCCCTACTTCGATCTCTACAAAAATAAATGGAAAATTTTGCCGGGATGAGAAATGAAATAAGTGATGGGGAAGGCTTTTCCATCCCAGCTCTGCCCCATGACATCTCTACTATCAAGTGTTAGCTCGATTATGTGTTGCCTTTGACCTAATCGGTAGACGCAAGCTTGTAATCAAGAAAACACCGAATGCCACTGCTTCCATTTTTATTTTTCTTGTATTTATTAAGTGTGTCGGCGTTGTCCACACCGCTTAGTTATTCTCACGTTGAAATGTAGGGGGTGTACATGGTCCGGGTTGGGCTGGGTTGGGTTGAAGGATTTTTTTGACCCAATCCAAAAGTTCAGGTTGGTTGGATTGATAACTTACCAATCAGAAACTTTTCACAACCCAAACCAACCCTCTATTTTCAGGTTGGGTTGTCAAATTTTTTTAGTTTTATTTATCCACAATTCATAATTATTGGGATACCATTCTAGAGAAAATATATTAAAAGTTCACAAACAAACACAAATCAATCTATAAATTATTCATAAAAAAAAAAATCGATAAGGAAGAACGAGCAAAAATAGAAAATTGTAACATATTAACATAGTTCAACAAATAGACAATAAATACATATATTTGCCAACAAATTCGATAAAGAGCCAAAATTGTAACATATTAACATAGTTCAACACAATAAATTCGATAAAAAATAATGAGCGAAAATGGTAATATATAGACAATAAATACATATATTTGCCTAACGTCAAATTCGGGCATTAGTGTTCTTAGATTGACCTAGCACCACTCCGGCAATCCCATTAATACGGAAGAATTCTTAACTAATCTAATTTAGCTTGGGTCAACTCGAAGGTTTTGCCCACGAACCCGAAACCGAACCGATTTATTACGGATTTCGAAAAATGAACCCAACCCTATTCGAAATGCTAATCCAATTCAACCCAACGTTCGGATTGAGTTGATCTGAGTTGTTGGGTTGAACATACACAAATGTACTAATAAAACTTCTAGGATATGTTTTTTTTTTTAAATAAAACTTTTTAAAATTTTTTTTAAGGATTTTATTAATGAAAAGTATAAAATTTATAATATTTTTATACATTTAGCCTTTTATTCTTTTAACCATCTGAAATTTCCATTATTCTAAACCCTATTTCACGTCCCGCCACACCACCCTCCCATCACCAGCCACTGCACCCCGCCCCCACCGTCGCCTCACGCCGCTCCTGCCAGACGTCGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTGCAGTCTCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTCGGTGAGTTCGTGCCGACCACCCTTACGCGCGCTGCCGCTCAATTTTCAGATACTTAGGTGTTGATTTTTTGTTTGATTCTTTATTTTGTTTCGTTGGTTTATGTTGACTTGTTTGGTTTCGTTGTTGATTTCTTCTTCAACCAATGTTGAACTAAGAACGTATGCATTACAGAATAGAGGAAGGACAGATTGAATAACTAAATTTAAAGGTGTTGGATGATATATGTCCTACGTTGGCTTCATGGGTTTATAAACAAAGAATACTCTCTCCATTGGTTTGAGGCCTTTTGGGAAGCTCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATAACATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCCCTAAACTTAACCGTGCCCTAAATTTAACCATGCCAATAGATTGACAAATCCTCAAATGTCAAACAAAGTATTGTGAGTCTCGAAGGCATAGTCAAAAAGTGACTAGAGAACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCATACTTTGTTCGAGGGGAGGTATTGGATGAAAGTGTCCCAATCGGTTAAGGGAATGATCATGAGTTTATAATTAAAGGATACATTCTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAACGAACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAAAAGGAACAACAAGATGTATTATTCTTCATTTGAATCAATAATACATCATTTGAATCAATAAATAAAAAAGCCAAAAAAAAAAAAAAAGGAGAAAAGAAAGAAAGAACAGGGTTTAAGAAGAAGATTTCAATCACTATTTTTTTTTTGTTAACCTCCATTACTTGATTTTATATCTCTGAAGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCGGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGTTTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTTAGGTATGAAATATAGACAGGTCAATTTGATTTGCATACTTACATATGGAACATGAACACTTGAATCAGTTGGGCTGCTGATAGTTTCCAGATTTTTATATGATACAAAAAATTCTTATTTCATTTTCTCTTCTGGTTCAAGGTGTTATCCATGAATGTAATCTTTAATTCACTTGTTATTTTAGTGATATGATTGGTGAAGTTGAAGAAAGTAAGAAGCATTTATTGTAATTGTACTTCGTGTTATACTGTTCTAGTGCTCTTTAAGTCGAGTATTGATTTCCCTGCAAGAAGAACATGGTTCAAATGCAATGTGGAGTAGGTTTGAGAGGAAAACTGTGATGTCCCACATTGGTTGGGAGGAGAACAAACCACTATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGTCTTGAGGGAAAGCCCAAAGAGGACAATATCTGTTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGCCAGCCTTCTCGCTGTTCCCCGAAGGGGGTAGACACGAGGCGTTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGGTGGATTTGGGGGCGGTCCCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGGCGCTGGCCCCAAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTAGAAACCTTCCTCTAATAGACGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCAGTGGATCTGGGTCGTTACAAAAACCAAGAACTATTTTGATGAATGCTCTTATAGCTTTTCATGGGCTATGTGATTAGAAAGAAATAGTTGATATTGATTGACTGCCTCCATTATGTTCTTGCTAGTTAATACCACTACTTTTGTTTTGGATCTTCCAAATCATTCCCGTGGGAGGTCCGGACCCTTTCTTTTTTCTGATCCTTCGATAAAACGATTCATTCTCTTCTTAAAAAATAGGAGGTAGAACCAATAAATATTTCTTTTTCGATTCATCCCTAATTCTGAATTGTGTTTTTCATCTTTCCTTTTGGTGTTCACTCTCTACACCTTTCTGTTATTACATCATTTTAGTTGAAATACGTTGGTGTAGCTTTTTGTAAAATCTTTTAAGACGTATATACAGTGTCAGTTAGTTAGTGATGCAACATTTCACTCAGCATTAGGAAGTAGTGATGTAACTTTTCACTCATCATTAAAAAGTTTTTCTTCCTTGAGAGTTTTGGCGATTTTATTAAACCTTTGTGATTGATTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGGTTAGAACTTTTTCTTTGCACCTTGTCATGTCAAACTTGGAATTCATTTCATAATCGGGAATTTGTTTGATACAAGGTAGGATGATAAATTTTTGGCTTCTGTTGTGGTGCAAGGTTGCATTAAATTTCCATTTCTTTTCGTTCAATTATCATCCTTCCTGCCTTTTCATCATGTTTTTCCACTCGTTCTGTAACAATAACTTTGAATTAGTTTTTGCGTTCTTGATTTGTAAATGTCTTTTTATTTCCAAAGCTTTTTGCAAGATTTTTCAGTTCTTTTTCTTTCTGTTGTTATTATTTCTAAATTTTACATGCTTTATAGCATTCACATGAGTTTACTTATTGATCTTTTTGTCTATACTTCCAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGGTAATTTTAATGTGCAATCAAATCTTATTACTCGATTTCATGGCAGAAGTTGTATTGGATTTCTTAATTAAATACAGTTTGCTTACTTTTCCATTGTTTTTTTTTCAGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGAAGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTAGCAATGGAAAAGTTTTTTCAAGTAATTCAATTTTGAACTACTTTCATTTTTTTGAAAAAGAAAACGTATTTCATTGTTGTATGAAATTGGAAAAGGAGTAAAAAACTTGAAACATGAAAAGGTGGATTATAAGAAACTTCTCCAATTTGTAAGTAAGGAGTAAAGGCTATAAACTCTAAATGGATATTTACATTTGCACCTTAATAAGCACAAACATGGGCACGATGATACATCAATTTTAAAAAAAAAGTAGGACTGACACATGGGTGGCATAGTTTTTTTTTATATAAAATGTATATGTTTAGAATGCCCTCTAAGGTTGGGAATGGGCCATGTACAAACAGTCTCTGTGGGATAATTAATAATATTTAGCCTTAATAAGCTTGCACCAAAGGACAGTCTCTGCATATGAACAGCCAAAACCATTTCAATGGTTAACCACAAGTTGTTCCTGCTTAAACTATTTTTCATTCTTACACGTGAATCAGTAAATGTATCAGATATCAGTTTCCTAGTCTTTCTTCTCTGAATTTGTTTGTTTTTCTCTTACTTTGTTCCCTCAATCCAAATTTAAAATGATTTGAAATTAATAAAATAATTTTTGCACGACTGTAGTCGAATTATATTCTTTTATTCTTCTTTATTATGGTTTTTATGCAAAAAAAAAAAAAAAAAAAGAGTAAAAGAAAAAGAAAAATGAAAATGCTCATCTTTCATGTAAAGTATACTATGACATAAGAATATGGAATACTTGTGCCCGATTTCACATTTTTACACTGGTGCCCCAATACTGTCATTCTCTTATTATGCTGCCTTTATTAATTTCCTGATTTGGGTGGTCATATTAGTTTGATTTGCTGCCTATTTACTATGCTGTGAAAAGTAATTGTGGATTGTAGTTGCTTCTTCAAATAATGGCGTTCTTGTTTACAAATCCTATGTAGTCTCATCTTAATTGTCATAATTTTAGCTTAAAATGTTTTTCCCCCCAGATTTTTGGAACCCCGAAGGAACATCGACATTCGAAGCCATACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGGTATGGTTTATTTATATTTTTACCTGTTACTGAATTTAATTCTCTCTATCGTTGGTTGCATCCAAATACACAACTTCCACATTTCATGCAAATCATGTACTTGATGCAGTCCTTTCTGTTGAATGTGAGCAAGAACTTTATCGATTGCTGGATCGCCTGCTTTCTTTTCTTTTTTGGTCTCAAAACAAGAAAGTTTTCGAAGTTCGGGTGCCTATTTAAAAGGTGTAGCTTGAGTGCAAAGTATGGGGACCTGAGGGACAATGTGTGTTTTTGGTCAAGTAGTGTCTACCAGGATACATTAGGTTGGAGGGGCTTGAGATTAAGCAAATTTTGGCGAATAATTTTTTGGGAGAGCCCAGGTTTCTCGAGGTGGTTGGGATCTTGTAATTTTTCGCCCACATGTCAACAAAACTTTATTAATTTTTAGTTCAATTTCTAGTACCTATCAGATTTCTTAGTCCATTTTCATATAATTGTTGGTATAAGTTCTCGCTCGGGGATTGCGTGGGCGTGTCATCCCCAAAGAACCATTACTTAATGATATGGCTTTGTCTTCTTTGTTTGGTGTGATCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTTATTAAACTTCCTCTCCCCTCTTAGTTTATAAATGAGTATTCACAATTTTCGGTTAACTTAAAAAATTTGTATTTTACAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGGTTAGACGACTCAACTTTTTGATGATTTGGGATTACACTTCTTCAATATGCCTTTACAATATATCTGAGGGTTTACTAAGGAGGCATTAGCTGCTATGCTTTTATGGTTTCTCTAAGTTCATTTTGTACAAGAGAACTGAAGTATAGGCATTACAGAAAAAGAATGTCATTTCAAAGGCCTATTATTCGTTATCTTTTTCAATTCAAGGCTCTTTGAGAAATGATCTGCTCATCTAATTTAGCATTATGCTTTTAGTAATGTTTTTTCTATTCATGGTTGAATACCTGGAATTGCAATAATCCCTTGCATTCTTTAGAGAACACTAGTAGTGGGAGTTGGGAGGATCGTTGAGAGGGAGTCCCACGTTTGCTAATTAGGGAATGATCATGAGTTTATAAGTAAGGAATACATTTCCATTCGTACGAGGTCTTTTGGAGAAACCAAAAGCAAAACCACGAGAGCTTATGCTCAAAGTGGACAATATCAATACCATTGTGGAGGTTCGTGTTTCCTAACATAGAATACTCAAATGTCGAACAAATAAGTTGTGAGCCTCGAAGGTGTGGTCAAAAGTGACTCAAGTGTCGAACAAATGATGTATTTTGTTCGAGGACTCCAGTGAAGGAGTCGAGCCTCGATTAAGGGGAGGCTGTTCCTGGGCTCCATAGGTCTCATAGGATGCTCTATAGTGTATTTTGTTCGAGGGTAGGATTGTTGAGAGGGAGTCTCTCGTTAGCTAGTTTATAAGTAAGGAATACATCTCAATTGATATGAGGCCTTTTGGAGAAACTAAAAGTAAAATTATGAGAGCTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGGTTCGTAATTCCTAACAAGCAGCTCATGTGATCTACGAAAAGTTGGAACCAAGTTCTATAATTTGAGCTTTAACAATTAGACATAGACTTGCTCATGTTTTTGATGTCTCTCCATAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGAAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAGTCTTTGGATGGACTTCATCTTGTCTAGACTCAAAATTAAAGTTCCTCACCCCTCCAATGAAATGGGTATTTGTTCTATAATGTACTGTTATCTATAGTGCAAATTTTGGCCTTGTTATTTATTTAAACCTGGAATTCTGTTTCTGTATGTTCAATGTTTGAATGCTTTTAGATATGATTTTATAAGATATGTTACAATGAGTCAGTAGTTCTTGACGAATGCTATCTCTCTA

mRNA sequence

ATGTCAAAGTCGGCTCCTTGGTGGAATGTTCCACTGCACCCCGCCCCCACCGTCGCCTCACGCCGCTCCTGCCAGACGTCGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTGCAGTCTCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTCGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCGGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGTTTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGAAGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGATTTTTGGAACCCCGAAGGAACATCGACATTCGAAGCCATACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGAAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAGTCTTTGGATGGACTTCATCTTGTCTAGACTCAAAATTAAAGTTCCTCACCCCTCCAATGAAATGGGTATTTGTTCTATAATGTACTGTTATCTATAGTGCAAATTTTGGCCTTGTTATTTATTTAAACCTGGAATTCTGTTTCTGTATGTTCAATGTTTGAATGCTTTTAGATATGATTTTATAAGATATGTTACAATGAGTCAGTAGTTCTTGACGAATGCTATCTCTCTA

Coding sequence (CDS)

ATGTCAAAGTCGGCTCCTTGGTGGAATGTTCCACTGCACCCCGCCCCCACCGTCGCCTCACGCCGCTCCTGCCAGACGTCGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTGCAGTCTCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCCGAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTCGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCGGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAGGAAGTCATAACAAAGAGTGAATCTGTTTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTTAGGTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCAAGGTCCACCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGTAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGACCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAACTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCGATTTTGACATTCTCATCAAATTTTGATAAAGAAGCCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGATTTTTGGAACCCCGAAGGAACATCGACATTCGAAGCCATACCATGATCATGTATTTGTTTTCTCCATTGTAGATGACCACATATGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTAGCTCGTGGAGGACTAGATAAAATGACTCTCATTGAGGTCGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCAACCCTATACGAGAATCCGCTCTACGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAGAAGGCTGGAAAATACTCGAAGAAAGTTAAAGCGAAAACGAGGAGAAAGATGCACGAGTTATCAAATCCATTGGAACCGGACGAGTTTGCTGATATGTGGAAGGAATAG

Homology

[Close]

BLAST of CmoCh10G012450 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.0e-66
Identity = 140/323 (43.34%), Postives = 196/323 (60.68%), Query Frame = 1


Query: 74  GVGVTFSMVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAVFRN 133
           G+ V    +K+      LPA +    + A E  K  + G      + K +       ++N
Sbjct: 11  GLAVQAKKLKRDAKDGKLPAKANDVSEEAAEEEKDRIPG-----PVCKGK-------WKN 70

Query: 134 KEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLF 193
           KE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+  ++
Sbjct: 71  KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIY 130

Query: 194 FECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAH 253
           FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+  H
Sbjct: 131 FEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPH 190

Query: 254 WKLLKEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGL 313
           + LLKE+++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D       
Sbjct: 191 YALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED------- 250

Query: 314 DKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAK 373
               L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K + K
Sbjct: 251 --AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVK 307

Query: 374 TRRKMH--ELSNPLEPDEFADMW 395
             +K+   E    L  D  AD++
Sbjct: 311 DVQKLRKKEPKTILPHDPTADVF 307

[Close]

BLAST of CmoCh10G012450 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 4.0e-66
Identity = 129/266 (48.50%), Postives = 177/266 (66.54%), Query Frame = 1


Query: 131 FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 190
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 191 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 250
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 251 EAHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 310
             H+ LLKE+++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 176 LPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 235

Query: 311 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 370
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 236 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQ 295

Query: 371 KAKTRRKMH--ELSNPLEPDEFADMW 395
           + K  +K+   E    L  D  AD++
Sbjct: 296 QVKDVQKLRKKEPKTLLPHDPTADVF 307

[Close]

BLAST of CmoCh10G012450 vs. Swiss-Prot
Match: BRX1_XENLA (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.0e-66
Identity = 140/314 (44.59%), Postives = 197/314 (62.74%), Query Frame = 1


Query: 84  KRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAV----FRNKEKVLV 143
           KRK   +LP V+        +++K+ L G  ++E     E +    V    ++NKE+VL+
Sbjct: 5   KRKRG-SLPEVATNT-----KKAKKQLAG-SEQEATAGEEFIVPPPVSEGKWKNKERVLI 64

Query: 144 TCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKH 203
             SR INFR RHLM ++ SL+PH + + K++ R  K   +NE+ E+K C+  ++FE +K 
Sbjct: 65  FSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEAKKK 124

Query: 204 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKE 263
           +DLY+W++  P GPS KFLV  +HT+ ELK++GN LKGSRPIL+F   FD+E  + LLKE
Sbjct: 125 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 184

Query: 264 IIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLI 323
           ++ QIFGTP+ H  S+P+ DH+F FSI D+ IWFRNYQI     E D           L+
Sbjct: 185 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED---------AALV 244

Query: 324 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 383
           E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A K  +K + K  +K+ 
Sbjct: 245 EIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKEKQQVKEVQKLK 297

Query: 384 ELSN----PLEPDE 390
           +  +    P++P E
Sbjct: 305 KEEDRPVIPVDPTE 297

[Close]

BLAST of CmoCh10G012450 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-65
Identity = 128/266 (48.12%), Postives = 176/266 (66.17%), Query Frame = 1


Query: 131 FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 190
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 191 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 250
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 251 EAHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 310
             H+ LLKE+++QI  TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 176 LPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 235

Query: 311 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 370
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 236 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYREKQ 295

Query: 371 KAKTRRKMH--ELSNPLEPDEFADMW 395
           + K  +K+   E    L  D  AD++
Sbjct: 296 QVKDVQKLRKKEPKTLLPHDPTADVF 307

[Close]

BLAST of CmoCh10G012450 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-65
Identity = 129/266 (48.50%), Postives = 174/266 (65.41%), Query Frame = 1


Query: 131 FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSS 190
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 55  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 114

Query: 191 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 250
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD 
Sbjct: 115 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDD 174

Query: 251 EAHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVAR 310
             H+ LLKE ++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 175 LPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 234

Query: 311 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKK- 370
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 235 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYREKQ 294

Query: 371 -VKAKTRRKMHELSNPLEPDEFADMW 395
            VK   + +  E    L  D  AD++
Sbjct: 295 QVKDVQKSRKKEPKTILPHDPTADVF 306

[Close]

BLAST of CmoCh10G012450 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 6.2e-159
Identity = 271/318 (85.22%), Postives = 297/318 (93.40%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITK-SESVSDHA-VFRNKEKVL 140
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE + + +ES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 141 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 200
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 201 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLK 260
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+K+AHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 261 EIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 320
           E+I+QIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 321 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 380
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 381 HELSNPLEPDEFADMWKE 397
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of CmoCh10G012450 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 6.2e-159
Identity = 271/318 (85.22%), Postives = 297/318 (93.40%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITK-SESVSDHA-VFRNKEKVL 140
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE + + +ES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 141 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 200
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 201 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLK 260
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+K+AHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 261 EIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 320
           E+I+QIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 321 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 380
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 381 HELSNPLEPDEFADMWKE 397
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of CmoCh10G012450 vs. TrEMBL
Match: A0A061F737_THECC (Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 5.2e-158
Identity = 271/319 (84.95%), Postives = 291/319 (91.22%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVI---TKSESVSDHAVFRNKEKV 140
           M KKRK SET  A    KD+ APER KRTL GWKDKE +   T+S   S   VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 141 LVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECR 200
           +VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVES+S+KGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 201 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLL 260
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+K+AHWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 261 KEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMT 320
           KE+I+QIFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 321 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 380
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 381 MHELSNPLEPDEFADMWKE 397
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of CmoCh10G012450 vs. TrEMBL
Match: A0A0D2SNA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 2.9e-156
Identity = 271/330 (82.12%), Postives = 297/330 (90.00%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITK-SESVSDHA-VFRNKEKVL 140
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE + + +ES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 141 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 200
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 201 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLK 260
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+K+AHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 261 EIIVQ------------IFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESD 320
           E+I+Q            IFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESD
Sbjct: 181 EMIIQFSDTFFSIIFFQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESD 240

Query: 321 KVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKY 380
           K+ RGGLDKMTL+EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY
Sbjct: 241 KMVRGGLDKMTLVEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKY 300

Query: 381 SKKVKAKTRRKMHELSNPLEPDEFADMWKE 397
           +KKVKAKTRRKMHELSNPLEPDEFADMW+E
Sbjct: 301 AKKVKAKTRRKMHELSNPLEPDEFADMWRE 330

[Close]

BLAST of CmoCh10G012450 vs. TrEMBL
Match: B9N1J9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 4.9e-156
Identity = 268/317 (84.54%), Postives = 290/317 (91.48%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVS-DHAVFRNKEKVLV 140
           M KKRKH ET      KKD+ APER KRTL GWKDK  + ++E +      FRNKEKVLV
Sbjct: 1   MGKKRKHVETQVIEPAKKDEGAPERPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVLV 60

Query: 141 TCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKH 200
           TCSRRINFRYRHLMLN+VSLLPHCKKD+KVES STKGATLNELVELK  SSSLFFECRKH
Sbjct: 61  TCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRKH 120

Query: 201 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKE 260
           KDLYLWM KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS+NFDK+AHWKLLKE
Sbjct: 121 KDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKE 180

Query: 261 IIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLI 320
           +I+QIFGTPK+HR SKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL+
Sbjct: 181 MIIQIFGTPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTLV 240

Query: 321 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 380
           EVGPRFCLNPIKIFGGSFGGPTLYENP +VSPNQIRALEKKQKAGK++KKVKAKTRRKMH
Sbjct: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKMH 300

Query: 381 ELSNPLEPDEFADMWKE 397
           ELSNPLEPDEFADMWKE
Sbjct: 301 ELSNPLEPDEFADMWKE 317

[Close]

BLAST of CmoCh10G012450 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 536.2 bits (1380), Expect = 1.7e-152
Identity = 255/316 (80.70%), Postives = 283/316 (89.56%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAVFRNKEKVLVT 140
           M +KRKHSET+ A  VK  D APER +RTL GWKDK+   ++   +  +VFRNKEKVLVT
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 141 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 200
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++S++GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 201 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKEI 260
           DLY+WM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+ +AHWKLLKE+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEM 180

Query: 261 IVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 320
           + QIFG P+ HR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTLIE
Sbjct: 181 LTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIE 240

Query: 321 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 380
           VGPRFCLNPIKIFGGSFGG TLYENP YVSPNQIRALEK+ KAGK++KK+KAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHE 300

Query: 381 LSNPLEPDEFADMWKE 397
           LSNPLEPDEF DMW +
Sbjct: 301 LSNPLEPDEFTDMWND 314

[Close]

BLAST of CmoCh10G012450 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 526.9 bits (1356), Expect = 1.0e-149
Identity = 251/318 (78.93%), Postives = 283/318 (88.99%), Query Frame = 1


Query: 81  MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDK-EVITKSESVSDHAVFRNKEKVL 140
           M +KRKHSET  PA   K D+ AP+R KRTL GWKDK E   +       + F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 141 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 200
           VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++S+KGATLNEL+ELK  +S LFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 201 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLK 260
           HKDLY+WM K P+GPSVKFLV AVH MEE+KLTGNHLKGSRP+LTFSSNFDK+AHWKLLK
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query: 261 EIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 320
           E++ Q+FG PKEHR SKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL
Sbjct: 181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query: 321 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 380
           IEVGPRFCLNPIKIF GSFGGPTLYENPLYVSPNQIRALEK+ KAGK++KK+KAKTR+KM
Sbjct: 241 IEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKIKAKTRKKM 300

Query: 381 HELSNPLEPDEFADMWKE 397
           HELSNPLEPDEFADMWK+
Sbjct: 301 HELSNPLEPDEFADMWKD 318

[Close]

BLAST of CmoCh10G012450 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 619.0 bits (1595), Expect = 5.7e-174
Identity = 298/316 (94.30%), Postives = 306/316 (96.84%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAVFRNKEKVLVT 140
           M KKRKHSET+P VSVKKD+ A ER KRTL GWKDKEV  KSE+ SDHAVFRNKEKVLVT
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 141 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 200
           CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 201 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKEI 260
           DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK+ HWKLLKE+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEM 180

Query: 261 IVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 320
           I+QIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 321 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 380
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 381 LSNPLEPDEFADMWKE 397
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of CmoCh10G012450 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 600.9 bits (1548), Expect = 1.6e-168
Identity = 291/316 (92.09%), Postives = 301/316 (95.25%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAVFRNKEKVLVT 140
           M KKRKHSE+LP VSVKKDD APER KRTL GWKDK+V  + E  SDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 141 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 200
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 201 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKEI 260
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGSRPILTFSSNFDK+ H KLLKE+
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGSRPILTFSSNFDKDVHXKLLKEM 180

Query: 261 IVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 320
           I+QIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 321 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 380
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 381 LSNPLEPDEFADMWKE 397
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of CmoCh10G012450 vs. NCBI nr
Match: gi|823198009|ref|XP_012434459.1| (PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii])

HSP 1 Score: 568.5 bits (1464), Expect = 8.9e-159
Identity = 271/318 (85.22%), Postives = 297/318 (93.40%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITK-SESVSDHA-VFRNKEKVL 140
           M KKRKHSET  A   KKD+ APER KR+L GWKDKE + + +ES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 141 VTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRK 200
           VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVESRS+KGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 201 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLK 260
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+K+AHWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 261 EIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 320
           E+I+QIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 321 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 380
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 381 HELSNPLEPDEFADMWKE 397
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of CmoCh10G012450 vs. NCBI nr
Match: gi|590608740|ref|XP_007021346.1| (Ribosome biogenesis protein brix, putative [Theobroma cacao])

HSP 1 Score: 565.5 bits (1456), Expect = 7.5e-158
Identity = 271/319 (84.95%), Postives = 291/319 (91.22%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVI---TKSESVSDHAVFRNKEKV 140
           M KKRK SET  A    KD+ APER KRTL GWKDKE +   T+S   S   VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 141 LVTCSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECR 200
           +VTCSRRIN+RYRHLMLNMVSLLPHCKKDNKVES+S+KGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 201 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLL 260
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+K+AHWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 261 KEIIVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMT 320
           KE+I+QIFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 321 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 380
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 381 MHELSNPLEPDEFADMWKE 397
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of CmoCh10G012450 vs. NCBI nr
Match: gi|729360173|ref|XP_010545808.1| (PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana])

HSP 1 Score: 563.5 bits (1451), Expect = 2.9e-157
Identity = 264/316 (83.54%), Postives = 290/316 (91.77%), Query Frame = 1


Query: 81  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVITKSESVSDHAVFRNKEKVLVT 140
           M KKRKHSET      KK+D APER KRTL GWKD++ +++    S  +VFRNKEKVLVT
Sbjct: 1   MGKKRKHSETEAPAPEKKNDAAPERPKRTLLGWKDQDAVSEKSDPSSSSVFRNKEKVLVT 60

Query: 141 CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 200
           CSRRINFRYRHLMLNMVSLLPHCKKD+KVE++S+KGATLNELVELKGCSS LFFECRKH+
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGCSSCLFFECRKHQ 120

Query: 201 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKEAHWKLLKEI 260
           DLYLWM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+K+ HWKLLKE+
Sbjct: 121 DLYLWMVKSPEGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDVHWKLLKEM 180

Query: 261 IVQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 320
           ++QIFGTPKE R SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARGGLDKMTL+E
Sbjct: 181 LIQIFGTPKEQRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGGLDKMTLVE 240

Query: 321 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 380
           VGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRA+EK+ KAGK++KKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAMEKRNKAGKFAKKVKAKTRRKMHE 300

Query: 381 LSNPLEPDEFADMWKE 397
           LSNPLEPDEFADMWK+
Sbjct: 301 LSNPLEPDEFADMWKD 316

The following BLAST results are available for this feature:

BLAST of CmoCh10G012450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRX1_BOVIN	3.0e-66	43.34	Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1	[more]
BRX1_HUMAN	4.0e-66	48.50	Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2	[more]
BRX1_XENLA	4.0e-66	44.59	Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1	[more]
BRX1_PONAB	1.2e-65	48.12	Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1	[more]
BRX1_RAT	2.0e-65	48.50	Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1	[more]

BLAST of CmoCh10G012450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2PI01_GOSRA	6.2e-159	85.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]
A0A0B0NEE6_GOSAR	6.2e-159	85.22	Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1	[more]
A0A061F737_THECC	5.2e-158	84.95	Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4...	[more]
A0A0D2SNA9_GOSRA	2.9e-156	82.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]
B9N1J9_POPTR	4.9e-156	84.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1	[more]

BLAST of CmoCh10G012450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15460.1	1.7e-152	80.70	Ribosomal RNA processing Brix domain protein	[more]
AT1G52930.1	1.0e-149	78.93	Ribosomal RNA processing Brix domain protein	[more]

BLAST of CmoCh10G012450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099573\|ref\|XP_008450669.1\|	5.7e-174	94.30	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]	[more]
gi\|778662534\|ref\|XP_011659901.1\|	1.6e-168	92.09	PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s...	[more]
gi\|823198009\|ref\|XP_012434459.1\|	8.9e-159	85.22	PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii]	[more]
gi\|590608740\|ref\|XP_007021346.1\|	7.5e-158	84.95	Ribosome biogenesis protein brix, putative [Theobroma cacao]	[more]
gi\|729360173\|ref\|XP_010545808.1\|	2.9e-157	83.54	PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004154	Anticodon-bd
IPR007109	Brix
IPR026532	BRX1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G012450.1	CmoCh10G012450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 136..335 score: 5.89
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 142..331 score: 5.2
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 138..332 score: 2.5
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 135..338 score: 32
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 82..396 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G012450	Cla010961	Watermelon (97103) v1	cmowmB052
CmoCh10G012450	ClCG01G010880	Watermelon (Charleston Gray)	cmowcgB042
CmoCh10G012450	Cp4.1LG18g00120	Cucurbita pepo (Zucchini)	cmocpeB056
CmoCh10G012450	Cla97C01G010630	Watermelon (97103) v2	cmowmbB042
CmoCh10G012450	Bhi02G001671	Wax gourd	cmowgoB0084
CmoCh10G012450	Carg27422	Silver-seed gourd	carcmoB1011

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G012450	Cucumber (Chinese Long) v3	cmocucB0048
CmoCh10G012450	Cucumber (Chinese Long) v3	cmocucB0069
CmoCh10G012450	Watermelon (97103) v2	cmowmbB047
CmoCh10G012450	Wax gourd	cmowgoB0073
CmoCh10G012450	Cucurbita moschata (Rifu)	cmocmoB048
CmoCh10G012450	Cucumber (Gy14) v1	cgycmoB0048
CmoCh10G012450	Cucumber (Gy14) v1	cgycmoB0170
CmoCh10G012450	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G012450	Wild cucumber (PI 183967)	cmocpiB045
CmoCh10G012450	Cucumber (Chinese Long) v2	cmocuB042
CmoCh10G012450	Cucumber (Chinese Long) v2	cmocuB063
CmoCh10G012450	Melon (DHL92) v3.5.1	cmomeB060
CmoCh10G012450	Watermelon (Charleston Gray)	cmowcgB044
CmoCh10G012450	Watermelon (Charleston Gray)	cmowcgB046
CmoCh10G012450	Watermelon (97103) v1	cmowmB038
CmoCh10G012450	Cucurbita pepo (Zucchini)	cmocpeB073
CmoCh10G012450	Bottle gourd (USVL1VR-Ls)	cmolsiB034
CmoCh10G012450	Bottle gourd (USVL1VR-Ls)	cmolsiB043
CmoCh10G012450	Bottle gourd (USVL1VR-Ls)	cmolsiB062
CmoCh10G012450	Cucumber (Gy14) v2	cgybcmoB009
CmoCh10G012450	Cucumber (Gy14) v2	cgybcmoB019
CmoCh10G012450	Melon (DHL92) v3.6.1	cmomedB063