CmaCh10G006060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G006060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSerine-rich protein
LocationCma_Chr10 : 2805998 .. 2806724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGGTCTCTCTGTTTAACGATGAGTGATTGGTGTTTGAATCGCTGGAATGTAATTGCAGAAGAAAATGAATAGCAGTGGCTTTTAATATGCTTGATGTTTTTAAAATTTTATTTTTTCGACTAATTTCCCATATGATGTGATTCCACTTGAAGTTCAGAAAAATAAGAAAATTTAAATTATTTCTGTGCTTATAAAATATATATATACCCAAGGCAAAATTTTAGATTTATTTTTAGTTCAGAATGTTTAATTCCCAAATGGGTAAGAAACTCTTCACACATATGAACACAAAAGCAGGAGTAAAGCACATAATCTAATCTCATTATTGCAATGGCAACAACTGCCTACTACTACACATAACAAATGAACTTTAACTTGTGTAAGAATCTGACTACATTGTAAAAGCATAGTTTATAAGTAATAATCCACAAAGATGTTCGGAACTTACTTTTTCTTTTAAATCTCTAGCATATGGACAACGGAGCTTAA

mRNA sequence

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Coding sequence (CDS)

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Protein sequence

MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSVESVKKRCLCSPTRHPGSFRCRLHRSEYVWVGRPRMVKNGPAASKKHMDNGA
Homology
[Close]
BLAST of CmaCh10G006060 vs. TrEMBL
Match: A0A0A0LZG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.7e-25
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]
BLAST of CmaCh10G006060 vs. TrEMBL
Match: B9ILL3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05880g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAAT----------AVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ   T          A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]
BLAST of CmaCh10G006060 vs. TrEMBL
Match: V7C695_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSV--ESVKKRCLCSPTRHPGSFRCRLH 60
          MC+P      RE   V   WV    A+ A + GS       KRC+CSP++HPGSFRCRLH
Sbjct: 1  MCHPGVSFLNREAFMVHRRWVFPAVASQAHDGGSSGESGSAKRCVCSPSQHPGSFRCRLH 60

Query: 61 RSEYVWVGR 68
            EYVW GR
Sbjct: 61 HGEYVWRGR 69

[Close]
BLAST of CmaCh10G006060 vs. TrEMBL
Match: A0A151S3D7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT----------AATAVESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++ Q             T+ ES SV    KRC+CSP++HP
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVHGGGTSEESASV----KRCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH +EYVW GR
Sbjct: 61 GSFRCRLHHAEYVWRGR 73

[Close]
BLAST of CmaCh10G006060 vs. TrEMBL
Match: A0A0B2QLD5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAV----------ESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++   A  A           ESGSV    K C+CSP++HP
Sbjct: 1  MCHPGVPFVNREGLMVHRRWLVSPLARHAPRQVHDGGGSGESGSV----KHCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH  EYVW+GR
Sbjct: 61 GSFRCRLHHGEYVWIGR 73

[Close]
BLAST of CmaCh10G006060 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 1 

Query: 25 TAATAVES-------GSVESVKKRCLCSPTRHPGSFRCRLHRSEYVWV 66
          T AT VE+       G     KK+C+CSP++HP SF+CR H+ EY W+
Sbjct: 26 TVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWL 73

[Close]
BLAST of CmaCh10G006060 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 1 

Query: 28 TAVESGS------VESVKKRCLCSPTRHPGSFRCRLHRS 61
          +AVE GS          K  CLCSPT HPGSFRCR+HRS
Sbjct: 24 SAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]
BLAST of CmaCh10G006060 vs. NCBI nr
Match: gi|700210260|gb|KGN65356.1| (hypothetical protein Csa_1G369510 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]
BLAST of CmaCh10G006060 vs. NCBI nr
Match: gi|224142135|ref|XP_002324414.1| (hypothetical protein POPTR_0018s05880g [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAAT----------AVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ   T          A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]
BLAST of CmaCh10G006060 vs. NCBI nr
Match: gi|593704895|ref|XP_007152821.1| (hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSV--ESVKKRCLCSPTRHPGSFRCRLH 60
          MC+P      RE   V   WV    A+ A + GS       KRC+CSP++HPGSFRCRLH
Sbjct: 1  MCHPGVSFLNREAFMVHRRWVFPAVASQAHDGGSSGESGSAKRCVCSPSQHPGSFRCRLH 60

Query: 61 RSEYVWVGR 68
            EYVW GR
Sbjct: 61 HGEYVWRGR 69

[Close]
BLAST of CmaCh10G006060 vs. NCBI nr
Match: gi|1012338069|gb|KYP49330.1| (hypothetical protein KK1_028968 [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-09
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT----------AATAVESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++ Q             T+ ES SV    KRC+CSP++HP
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVHGGGTSEESASV----KRCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH +EYVW GR
Sbjct: 61 GSFRCRLHHAEYVWRGR 73

[Close]
BLAST of CmaCh10G006060 vs. NCBI nr
Match: gi|734374769|gb|KHN20688.1| (hypothetical protein glysoja_019005 [Glycine soja])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAV----------ESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++   A  A           ESGSV    K C+CSP++HP
Sbjct: 1  MCHPGVPFVNREGLMVHRRWLVSPLARHAPRQVHDGGGSGESGSV----KHCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH  EYVW+GR
Sbjct: 61 GSFRCRLHHGEYVWIGR 73

The following BLAST results are available for this feature:
BLAST of CmaCh10G006060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh10G006060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZG6_CUCSA9.7e-2566.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1[more]
B9ILL3_POPTR3.6e-1147.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05880g PE=4 SV=1[more]
V7C695_PHAVU2.0e-0949.28Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1[more]
A0A151S3D7_CAJCA2.6e-0946.75Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1[more]
A0A0B2QLD5_GLYSO1.3e-0846.75Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1[more]
BLAST of CmaCh10G006060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52342.11.4e-0645.83 unknown protein[more]
AT1G67910.12.4e-0658.97 unknown protein[more]
BLAST of CmaCh10G006060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210260|gb|KGN65356.1|1.4e-2466.67hypothetical protein Csa_1G369510 [Cucumis sativus][more]
gi|224142135|ref|XP_002324414.1|5.1e-1147.06hypothetical protein POPTR_0018s05880g [Populus trichocarpa][more]
gi|593704895|ref|XP_007152821.1|2.8e-0949.28hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris][more]
gi|1012338069|gb|KYP49330.1|3.7e-0946.75hypothetical protein KK1_028968 [Cajanus cajan][more]
gi|734374769|gb|KHN20688.1|1.8e-0846.75hypothetical protein glysoja_019005 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G006060.1CmaCh10G006060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 37..67
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G006060Cucsa.235590Cucumber (Gy14) v1cgycmaB0648
CmaCh10G006060Cla010624Watermelon (97103) v1cmawmB070
CmaCh10G006060Csa1G369510Cucumber (Chinese Long) v2cmacuB063
CmaCh10G006060CSPI01G19300Wild cucumber (PI 183967)cmacpiB065
CmaCh10G006060CmoCh11G006040Cucurbita moschata (Rifu)cmacmoB068
CmaCh10G006060CsaV3_1G030560Cucumber (Chinese Long) v3cmacucB0073
CmaCh10G006060Bhi02G000931Wax gourdcmawgoB0076
CmaCh10G006060Bhi09G000115Wax gourdcmawgoB0071
CmaCh10G006060Carg12187Silver-seed gourdcarcmaB0044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G006060Cucurbita pepo (Zucchini)cmacpeB074
CmaCh10G006060Cucurbita pepo (Zucchini)cmacpeB080
CmaCh10G006060Cucurbita pepo (Zucchini)cmacpeB093
CmaCh10G006060Cucurbita pepo (Zucchini)cmacpeB101
CmaCh10G006060Bottle gourd (USVL1VR-Ls)cmalsiB049
CmaCh10G006060Bottle gourd (USVL1VR-Ls)cmalsiB051
CmaCh10G006060Bottle gourd (USVL1VR-Ls)cmalsiB074
CmaCh10G006060Cucumber (Gy14) v2cgybcmaB020
CmaCh10G006060Cucumber (Gy14) v2cgybcmaB154
CmaCh10G006060Melon (DHL92) v3.6.1cmamedB079
CmaCh10G006060Melon (DHL92) v3.6.1cmamedB058
CmaCh10G006060Melon (DHL92) v3.6.1cmamedB060
CmaCh10G006060Silver-seed gourdcarcmaB0166
CmaCh10G006060Silver-seed gourdcarcmaB0386
CmaCh10G006060Silver-seed gourdcarcmaB0793
CmaCh10G006060Cucumber (Chinese Long) v3cmacucB0081
CmaCh10G006060Watermelon (97103) v2cmawmbB058
CmaCh10G006060Watermelon (97103) v2cmawmbB079
CmaCh10G006060Watermelon (97103) v2cmawmbB088
CmaCh10G006060Wax gourdcmawgoB0052
CmaCh10G006060Cucurbita maxima (Rimu)cmacmaB072
CmaCh10G006060Cucurbita maxima (Rimu)cmacmaB086
CmaCh10G006060Cucurbita maxima (Rimu)cmacmaB115
CmaCh10G006060Cucumber (Gy14) v1cgycmaB0283
CmaCh10G006060Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G006060Cucurbita moschata (Rifu)cmacmoB080
CmaCh10G006060Cucurbita moschata (Rifu)cmacmoB095
CmaCh10G006060Wild cucumber (PI 183967)cmacpiB073
CmaCh10G006060Wild cucumber (PI 183967)cmacpiB080
CmaCh10G006060Cucumber (Chinese Long) v2cmacuB075
CmaCh10G006060Cucumber (Chinese Long) v2cmacuB081
CmaCh10G006060Melon (DHL92) v3.5.1cmameB058
CmaCh10G006060Melon (DHL92) v3.5.1cmameB074
CmaCh10G006060Watermelon (Charleston Gray)cmawcgB042
CmaCh10G006060Watermelon (Charleston Gray)cmawcgB047
CmaCh10G006060Watermelon (Charleston Gray)cmawcgB070
CmaCh10G006060Watermelon (97103) v1cmawmB043
CmaCh10G006060Watermelon (97103) v1cmawmB066