Cla010624 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010624
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 11744365 .. 11744631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTACCCACACGATTTCCTGCCTCGGAAGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGCGGCGGAGGCGGCTGAGAGTTGCGGCGGCGGAAAGGCGGAAAGGCGGTGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAAGGATAAGTAA

mRNA sequence

ATGTGTTACCCACACGATTTCCTGCCTCGGAAGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGCGGCGGAGGCGGCTGAGAGTTGCGGCGGCGGAAAGGCGGAAAGGCGGTGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAAGGATAAGTAA

Coding sequence (CDS)

ATGTGTTACCCACACGATTTCCTGCCTCGGAAGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGCGGCGGAGGCGGCTGAGAGTTGCGGCGGCGGAAAGGCGGAAAGGCGGTGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAAGGATAAGTAA

Protein sequence

MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK

Homology

[Close]

BLAST of Cla010624 vs. TrEMBL
Match: A0A0A0LZG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-29
Identity = 63/90 (70.00%), Postives = 70/90 (77.78%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRC 60
          MCYPH FL R++F +++CNWVL QTT A  A  A ESCG    +RRCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTKDK 89
          RLHR+EYVWV RRR VKNG AE K LT DK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of Cla010624 vs. TrEMBL
Match: A0A151S3D7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE-----RRCLCSPTRHPGS 60
          MC+P      +E L V   W++ Q    A       GGG +E     +RC+CSP++HPGS
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVH--GGGTSEESASVKRCVCSPSQHPGS 60

Query: 61 FRCRLHRSEYVWVGR 71
          FRCRLH +EYVW GR
Sbjct: 61 FRCRLHHAEYVWRGR 73

[Close]

BLAST of Cla010624 vs. TrEMBL
Match: A0A0B2QLD5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE----RRCLCSPTRHPGSF 60
          MC+P      +E L V   W L+   A  A      GGG  E    + C+CSP++HPGSF
Sbjct: 1  MCHPGVPFVNREGLMVHRRW-LVSPLARHAPRQVHDGGGSGESGSVKHCVCSPSQHPGSF 60

Query: 61 RCRLHRSEYVWVGRR 72
          RCRLH  EYVW+GRR
Sbjct: 61 RCRLHHGEYVWIGRR 74

[Close]

BLAST of Cla010624 vs. TrEMBL
Match: I1KIR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G087100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE----RRCLCSPTRHPGSF 60
          MC+P      +E L V   W L+   A  A      GGG  E    + C+CSP++HPGSF
Sbjct: 1  MCHPGVPFVNREGLMVHRRW-LVSPLARHAPRQVHDGGGSGESGSVKHCVCSPSQHPGSF 60

Query: 61 RCRLHRSEYVWVGRR 72
          RCRLH  EYVW+GRR
Sbjct: 61 RCRLHHGEYVWIGRR 74

[Close]

BLAST of Cla010624 vs. TrEMBL
Match: V7C695_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-09
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 1  MCYPH-DFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCR 60
          MC+P   FL R+ F+ V   WV     + A +   S   G A +RC+CSP++HPGSFRCR
Sbjct: 1  MCHPGVSFLNREAFM-VHRRWVFPAVASQAHDGGSSGESGSA-KRCVCSPSQHPGSFRCR 60

Query: 61 LHRSEYVWVGR 71
          LH  EYVW GR
Sbjct: 61 LHHGEYVWRGR 69

[Close]

BLAST of Cla010624 vs. NCBI nr
Match: gi|700210260|gb|KGN65356.1| (hypothetical protein Csa_1G369510 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 63/90 (70.00%), Postives = 70/90 (77.78%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRC 60
          MCYPH FL R++F +++CNWVL QTT A  A  A ESCG    +RRCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRRRMVKNGSAESKKLTKDK 89
          RLHR+EYVWV RRR VKNG AE K LT DK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of Cla010624 vs. NCBI nr
Match: gi|1012338069|gb|KYP49330.1| (hypothetical protein KK1_028968 [Cajanus cajan])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE-----RRCLCSPTRHPGS 60
          MC+P      +E L V   W++ Q    A       GGG +E     +RC+CSP++HPGS
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVH--GGGTSEESASVKRCVCSPSQHPGS 60

Query: 61 FRCRLHRSEYVWVGR 71
          FRCRLH +EYVW GR
Sbjct: 61 FRCRLHHAEYVWRGR 73

[Close]

BLAST of Cla010624 vs. NCBI nr
Match: gi|734374769|gb|KHN20688.1| (hypothetical protein glysoja_019005 [Glycine soja])

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE----RRCLCSPTRHPGSF 60
          MC+P      +E L V   W L+   A  A      GGG  E    + C+CSP++HPGSF
Sbjct: 1  MCHPGVPFVNREGLMVHRRW-LVSPLARHAPRQVHDGGGSGESGSVKHCVCSPSQHPGSF 60

Query: 61 RCRLHRSEYVWVGRR 72
          RCRLH  EYVW+GRR
Sbjct: 61 RCRLHHGEYVWIGRR 74

[Close]

BLAST of Cla010624 vs. NCBI nr
Match: gi|593704895|ref|XP_007152821.1| (hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 1  MCYPH-DFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCR 60
          MC+P   FL R+ F+ V   WV     + A +   S   G A +RC+CSP++HPGSFRCR
Sbjct: 1  MCHPGVSFLNREAFM-VHRRWVFPAVASQAHDGGSSGESGSA-KRCVCSPSQHPGSFRCR 60

Query: 61 LHRSEYVWVGR 71
          LH  EYVW GR
Sbjct: 61 LHHGEYVWRGR 69

[Close]

BLAST of Cla010624 vs. NCBI nr
Match: gi|965617697|dbj|BAU02847.1| (hypothetical protein VIGAN_11243800 [Vigna angularis var. angularis])

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-09
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 1  MCYPH-DFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCR 60
          MC+P   FL R+ F+ ++  W+L        +   S G   + +RC CSP++HPGSFRCR
Sbjct: 1  MCHPGLPFLNREAFM-LRRRWLLSAVPGQPRDGGGSSGESGSAKRCACSPSQHPGSFRCR 60

Query: 61 LHRSEYVWVGR 71
          LH  EYVW GR
Sbjct: 61 LHHGEYVWRGR 70

The following BLAST results are available for this feature:

BLAST of Cla010624 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6_CUCSA	1.0e-29	70.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1	[more]
A0A151S3D7_CAJCA	1.2e-09	45.33	Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1	[more]
A0A0B2QLD5_GLYSO	3.4e-09	46.67	Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1	[more]
I1KIR9_SOYBN	3.4e-09	46.67	Uncharacterized protein OS=Glycine max GN=GLYMA_07G087100 PE=4 SV=1	[more]
V7C695_PHAVU	4.5e-09	49.30	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1	[more]

BLAST of Cla010624 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210260\|gb\|KGN65356.1\|	1.5e-29	70.00	hypothetical protein Csa_1G369510 [Cucumis sativus]	[more]
gi\|1012338069\|gb\|KYP49330.1\|	1.7e-09	45.33	hypothetical protein KK1_028968 [Cajanus cajan]	[more]
gi\|734374769\|gb\|KHN20688.1\|	4.9e-09	46.67	hypothetical protein glysoja_019005 [Glycine soja]	[more]
gi\|593704895\|ref\|XP_007152821.1\|	6.4e-09	49.30	hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris]	[more]
gi\|965617697\|dbj\|BAU02847.1\|	8.4e-09	45.07	hypothetical protein VIGAN_11243800 [Vigna angularis var. angularis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU48009	watermelon EST collection version 2.0	transcribed_cluster
WMU53334	watermelon EST collection version 2.0	transcribed_cluster
WMU79537	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010624	Cla010624.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU79537	WMU79537	transcribed_cluster
WMU48009	WMU48009	transcribed_cluster
WMU53334	WMU53334	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010624	Csa1G369510	Cucumber (Chinese Long) v2	cuwmB098
Cla010624	CSPI01G19300	Wild cucumber (PI 183967)	cpiwmB103
Cla010624	Cucsa.235590	Cucumber (Gy14) v1	cgywmB439
Cla010624	CmaCh10G006060	Cucurbita maxima (Rimu)	cmawmB070
Cla010624	CmoCh11G006040	Cucurbita moschata (Rifu)	cmowmB123
Cla010624	Carg12187	Silver-seed gourd	carwmB0039
Cla010624	CsaV3_1G030560	Cucumber (Chinese Long) v3	cucwmB108
Cla010624	Bhi02G000931	Wax gourd	wgowmB680

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010624	Watermelon (97103) v2	wmwmbB406
Cla010624	Wax gourd	wgowmB647
Cla010624	Watermelon (Charleston Gray)	wcgwmB344
Cla010624	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla010624	Melon (DHL92) v3.6.1	medwmB284