CmaCh10G006060.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G006060.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Serine-rich protein
Location	Cma_Chr10 : 2805998 .. 2806724 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGGTCTCTCTGTTTAACGATGAGTGATTGGTGTTTGAATCGCTGGAATGTAATTGCAGAAGAAAATGAATAGCAGTGGCTTTTAATATGCTTGATGTTTTTAAAATTTTATTTTTTCGACTAATTTCCCATATGATGTGATTCCACTTGAAGTTCAGAAAAATAAGAAAATTTAAATTATTTCTGTGCTTATAAAATATATATATACCCAAGGCAAAATTTTAGATTTATTTTTAGTTCAGAATGTTTAATTCCCAAATGGGTAAGAAACTCTTCACACATATGAACACAAAAGCAGGAGTAAAGCACATAATCTAATCTCATTATTGCAATGGCAACAACTGCCTACTACTACACATAACAAATGAACTTTAACTTGTGTAAGAATCTGACTACATTGTAAAAGCATAGTTTATAAGTAATAATCCACAAAGATGTTCGGAACTTACTTTTTCTTTTAAATCTCTAGCATATGGACAACGGAGCTTAA

mRNA sequence

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Coding sequence (CDS)

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Protein sequence

MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSVESVKKRCLCSPTRHPGSFRCRLHRSEYVWVGRPRMVKNGPAASKKHMDNGA

Homology

[Close]

BLAST of CmaCh10G006060.1 vs. TrEMBL
Match: A0A0A0LZG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.7e-25
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]

BLAST of CmaCh10G006060.1 vs. TrEMBL
Match: B9ILL3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05880g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAAT----------AVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ   T          A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]

BLAST of CmaCh10G006060.1 vs. TrEMBL
Match: V7C695_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSV--ESVKKRCLCSPTRHPGSFRCRLH 60
          MC+P      RE   V   WV    A+ A + GS       KRC+CSP++HPGSFRCRLH
Sbjct: 1  MCHPGVSFLNREAFMVHRRWVFPAVASQAHDGGSSGESGSAKRCVCSPSQHPGSFRCRLH 60

Query: 61 RSEYVWVGR 68
            EYVW GR
Sbjct: 61 HGEYVWRGR 69

[Close]

BLAST of CmaCh10G006060.1 vs. TrEMBL
Match: A0A151S3D7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT----------AATAVESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++ Q             T+ ES SV    KRC+CSP++HP
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVHGGGTSEESASV----KRCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH +EYVW GR
Sbjct: 61 GSFRCRLHHAEYVWRGR 73

[Close]

BLAST of CmaCh10G006060.1 vs. TrEMBL
Match: A0A0B2QLD5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAV----------ESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++   A  A           ESGSV    K C+CSP++HP
Sbjct: 1  MCHPGVPFVNREGLMVHRRWLVSPLARHAPRQVHDGGGSGESGSV----KHCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH  EYVW+GR
Sbjct: 61 GSFRCRLHHGEYVWIGR 73

[Close]

BLAST of CmaCh10G006060.1 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 25 TAATAVES-------GSVESVKKRCLCSPTRHPGSFRCRLHRSEYVWV 66
          T AT VE+       G     KK+C+CSP++HP SF+CR H+ EY W+
Sbjct: 26 TVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWL 73

[Close]

BLAST of CmaCh10G006060.1 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 1


Query: 28 TAVESGS------VESVKKRCLCSPTRHPGSFRCRLHRS 61
          +AVE GS          K  CLCSPT HPGSFRCR+HRS
Sbjct: 24 SAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CmaCh10G006060.1 vs. NCBI nr
Match: gi|700210260|gb|KGN65356.1| (hypothetical protein Csa_1G369510 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]

BLAST of CmaCh10G006060.1 vs. NCBI nr
Match: gi|224142135|ref|XP_002324414.1| (hypothetical protein POPTR_0018s05880g [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAAT----------AVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ   T          A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]

BLAST of CmaCh10G006060.1 vs. NCBI nr
Match: gi|593704895|ref|XP_007152821.1| (hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSV--ESVKKRCLCSPTRHPGSFRCRLH 60
          MC+P      RE   V   WV    A+ A + GS       KRC+CSP++HPGSFRCRLH
Sbjct: 1  MCHPGVSFLNREAFMVHRRWVFPAVASQAHDGGSSGESGSAKRCVCSPSQHPGSFRCRLH 60

Query: 61 RSEYVWVGR 68
            EYVW GR
Sbjct: 61 HGEYVWRGR 69

[Close]

BLAST of CmaCh10G006060.1 vs. NCBI nr
Match: gi|1012338069|gb|KYP49330.1| (hypothetical protein KK1_028968 [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-09
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT----------AATAVESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++ Q             T+ ES SV    KRC+CSP++HP
Sbjct: 1  MCHPGVSFVEREGLVVHTRWLVFQVPEHAPRQVHGGGTSEESASV----KRCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH +EYVW GR
Sbjct: 61 GSFRCRLHHAEYVWRGR 73

[Close]

BLAST of CmaCh10G006060.1 vs. NCBI nr
Match: gi|734374769|gb|KHN20688.1| (hypothetical protein glysoja_019005 [Glycine soja])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAV----------ESGSVESVKKRCLCSPTRHP 60
          MC+P      RE L V   W++   A  A           ESGSV    K C+CSP++HP
Sbjct: 1  MCHPGVPFVNREGLMVHRRWLVSPLARHAPRQVHDGGGSGESGSV----KHCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVGR 68
          GSFRCRLH  EYVW+GR
Sbjct: 61 GSFRCRLHHGEYVWIGR 73

The following BLAST results are available for this feature:

BLAST of CmaCh10G006060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G006060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6_CUCSA	9.7e-25	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369510 PE=4 SV=1	[more]
B9ILL3_POPTR	3.6e-11	47.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05880g PE=4 SV=1	[more]
V7C695_PHAVU	2.0e-09	49.28	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162600g PE=4 SV=1	[more]
A0A151S3D7_CAJCA	2.6e-09	46.75	Uncharacterized protein OS=Cajanus cajan GN=KK1_028968 PE=4 SV=1	[more]
A0A0B2QLD5_GLYSO	1.3e-08	46.75	Uncharacterized protein OS=Glycine soja GN=glysoja_019005 PE=4 SV=1	[more]

BLAST of CmaCh10G006060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52342.1	1.4e-06	45.83	unknown protein	[more]
AT1G67910.1	2.4e-06	58.97	unknown protein	[more]

BLAST of CmaCh10G006060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210260\|gb\|KGN65356.1\|	1.4e-24	66.67	hypothetical protein Csa_1G369510 [Cucumis sativus]	[more]
gi\|224142135\|ref\|XP_002324414.1\|	5.1e-11	47.06	hypothetical protein POPTR_0018s05880g [Populus trichocarpa]	[more]
gi\|593704895\|ref\|XP_007152821.1\|	2.8e-09	49.28	hypothetical protein PHAVU_004G162600g [Phaseolus vulgaris]	[more]
gi\|1012338069\|gb\|KYP49330.1\|	3.7e-09	46.75	hypothetical protein KK1_028968 [Cajanus cajan]	[more]
gi\|734374769\|gb\|KHN20688.1\|	1.8e-08	46.75	hypothetical protein glysoja_019005 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G006060	CmaCh10G006060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G006060.1	CmaCh10G006060.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G006060.1.exon.1	CmaCh10G006060.1.exon.1	exon
CmaCh10G006060.1.exon.2	CmaCh10G006060.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G006060.1.CDS.1	CmaCh10G006060.1.CDS.1	CDS
CmaCh10G006060.1.CDS.2	CmaCh10G006060.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 37..67 score: 1.2