CmaCh09G011730 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G011730
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr09 : 7219972 .. 7220769 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCAACAAAGACATAGAGACACTCTTATCCGCAAAACCATAGATCAATCCACGACACAAATTCTTAACTTTCGTGGAAAAATAGGAAACAAAATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGTAAGTACCTCTTTCTCTTACTGTGTTTCCTTCTTTTTCCTATGAGAAACAAAATGAAGAATTAATATATATATTTCTTGGGTTTGATAGGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTGGGCTTCCCAAAAAACACTATCTCTAAACCCTAAAAATAGTGTATGAAGTAGCAGTGGGTTTATAATCAAAGAACACTATCTCTATGGGTACGAGGCTTTTTGGGCTTCCCAAAAAGCAAAGCATGAGAGCTTATGCTCAAAGTGAAGAATATCATCCCATTGGAGAAAATCGTATTCATCTAACGTGGTATCAGAGTCATACTCATATCAATAGAATTCAATCTGTCAATTAAGGAGAGACGTACTTTATTCGAGGAGGGAATGATCA

mRNA sequence

GAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCAACAAAGACATAGAGACACTCTTATCCGCAAAACCATAGATCAATCCACGACACAAATTCTTAACTTTCGTGGAAAAATAGGAAACAAAATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTGGGCTTCCCAAAAAACACTATCTCTAAACCCTAAAAATAGTGTATGAAGTAGCAGTGGGTTTATAATCAAAGAACACTATCTCTATGGGTACGAGGCTTTTTGGGCTTCCCAAAAAGCAAAGCATGAGAGCTTATGCTCAAAGTGAAGAATATCATCCCATTGGAGAAAATCGTATTCATCTAACGTGGTATCAGAGTCATACTCATATCAATAGAATTCAATCTGTCAATTAAGGAGAGACGTACTTTATTCGAGGAGGGAATGATCA

Coding sequence (CDS)

ATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAA

Protein sequence

MENSTERTNKLTDEPDVHSHSTLCDCLLHFFIAILRSFGFNHHGRYRPTPDESEEESEYFKGHAPPPPPWSTGGGGQTD
Homology
[Close]
BLAST of CmaCh09G011730 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 45/109 (41.28%), Postives = 55/109 (50.46%), Query Frame = 1 

Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M+ STE++ K  D E D+H         T+ D +L  FI+ILR FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQTD 80
                               D+SEEESEY++ H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]
BLAST of CmaCh09G011730 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1 

Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M++STE++ K  D E D+H         T+ D +L  FIAILR FGF  +   YRP    
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQ 78
                               D+SEEESEY++ H PPPPPWSTGGGGQ
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]
BLAST of CmaCh09G011730 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 45/109 (41.28%), Postives = 55/109 (50.46%), Query Frame = 1 

Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M+ STE++ K  D E D+H         T+ D +L  FI+ILR FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQTD 80
                               D+SEEESEY++ H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

The following BLAST results are available for this feature:
BLAST of CmaCh09G011730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G011730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBZ4_CUCSA2.6e-0841.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1[more]
BLAST of CmaCh09G011730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G011730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128740|ref|XP_008464348.1|1.5e-0942.99PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo][more]
gi|449441177|ref|XP_004138360.1|3.7e-0841.28PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G011730.1CmaCh09G011730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G011730ClCG08G002880Watermelon (Charleston Gray)cmawcgB035
CmaCh09G011730Cp4.1LG00g02480Cucurbita pepo (Zucchini)cmacpeB025
CmaCh09G011730CsaV3_6G002930Cucumber (Chinese Long) v3cmacucB0047
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G011730Cucurbita maxima (Rimu)cmacmaB050
CmaCh09G011730Cucurbita maxima (Rimu)cmacmaB056
CmaCh09G011730Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G011730Cucurbita moschata (Rifu)cmacmoB044
CmaCh09G011730Cucurbita pepo (Zucchini)cmacpeB046
CmaCh09G011730Cucumber (Gy14) v2cgybcmaB883