ClCG08G002880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 6888836 .. 6890354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATTCGAGTGAAAAGAGCAAGAAGCAGGTGGATGATGAAGAAACTGGTCTTCATTCTCACTGTCATATCTTTTTAACGATCTGTGATTCAATCTTTCAAGCTTTCATCGCCATTTTGAGGTTCTTAGGTTTTAATCACAATGGACCACCTTACCGTCCGACGCCCTCCTCACCGGAGGATTGCTACACGGCCGGCTCAGATCCGCCTTCCACGGCGGTCGACCCACCCGACGACGAATCTGTAAGCCCATCTTTCTCTCTTTTTTTTTTTTTTTTTATTAAAATATGGTTCCAAATTCTTAAAGTAATTATTCTGTAAGTATGTTAAAAATGTATTTTTTCTATTTTATTTTTAATTTGAAAGTTTAAATTTTGAGTTTGATTTTAATATAGAATATATTTAGAATTATTTTGAAATAGTTAAAATCATTTTTGTTATGCTTTAAATTCTTTAAAATTAATTTTGATAATATAAAAAGTGAGCAAAGTAGCAAAATGAGTAAAATGAGTCAAACTATTTAATAAATACAAAAAAATTCCACTATCCATAAGTGATAAATTGTGATAGACCGCGATAGACTTCTATCATTTAATGATAGAAGTCTATAGAAGTCTATCGTCATATCGCTGATAAATAGTAAAAATTTTCTATATTTATAAATAATTTAATTTTTTTCTATTTATAATAATTTTTTTATATAAAATTTGCATTATGTTAACTAAATTAATTTTGGAGTGGTTAAGGATGTAGTGGAAAATAATTTTGCACATAAAAAAAAATGATTTTAACAATCTCAAAATCATTCTTAAACATATCCTTAGTTCTTAAAAGGTTATGATTTTGTCCCTGATATTCTTGTCCTCAATTTTTTATTAAATATTACCATCCATTTTTTGCATTAAATCTATTAATTAATTTAAAAAGATTTTGAAGTGAAATTTAAAAATTAGTTTCATTAATATTGAAAAGATAGTAAAAATTAATTAATTCTAATTCTTTTAGTTGTTTTAAATTTATTAATATACACTAATACCAAGGATTGAATCAATCCAAATATTGAGTAAAAAATCAAGATTAAAGTGTAAATCATGAAATTTAAAGATTAAATTGAAACAAAATTCAAATTTCAACAACTAAAATTATAAAGTTTTGAAATTTAGAGATTAAATTAAAATGAAATTCAAAACTTCAAAATTATAATATTTTGAAACCTCTTGCGGAAATAAAAGTAGATCCACTTATTTTCTATTTGTAATATATAAAATATTGAAAAATCTCCGTTAGGTTTTTCTGAATAATAGAGTGACTTCATCGAAAATTTTTAATTTTAAAGATTAAAATCAAGAAAATAAAAAAAGGGAAATTTTTATATTTGTCTTTATTTAAAAAGAAAAAAAATTATATTATTATTTGATGTGTTGGGTTTTTGTAGGAGGAAGAAAGTGAGTACTACAGGCCACATGTTCCTCCTCCGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACTGACTAA

mRNA sequence

ATGAAGGATTCGAGTGAAAAGAGCAAGAAGCAGGTGGATGATGAAGAAACTGGTCTTCATTCTCACTGTCATATCTTTTTAACGATCTGTGATTCAATCTTTCAAGCTTTCATCGCCATTTTGAGGTTCTTAGGTTTTAATCACAATGGACCACCTTACCGTCCGACGCCCTCCTCACCGGAGGATTGCTACACGGCCGGCTCAGATCCGCCTTCCACGGCGGTCGACCCACCCGACGACGAATCTGAGGAAGAAAGTGAGTACTACAGGCCACATGTTCCTCCTCCGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACTGACTAA

Coding sequence (CDS)

ATGAAGGATTCGAGTGAAAAGAGCAAGAAGCAGGTGGATGATGAAGAAACTGGTCTTCATTCTCACTGTCATATCTTTTTAACGATCTGTGATTCAATCTTTCAAGCTTTCATCGCCATTTTGAGGTTCTTAGGTTTTAATCACAATGGACCACCTTACCGTCCGACGCCCTCCTCACCGGAGGATTGCTACACGGCCGGCTCAGATCCGCCTTCCACGGCGGTCGACCCACCCGACGACGAATCTGAGGAAGAAAGTGAGTACTACAGGCCACATGTTCCTCCTCCGCCGCCGTGGAGCACCGGCGGCGGTGGTCAGACTGACTAA

Protein sequence

MKDSSEKSKKQVDDEETGLHSHCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPSSPEDCYTAGSDPPSTAVDPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD

Homology

[Close]

BLAST of ClCG08G002880 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-39
Identity = 82/110 (74.55%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MKDSSEKSKKQVDDEETGLHS--HCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPS 60
           MK S+EKSKKQ DD E+ LH   HC I LTI DSI Q FI+ILRF GF  + PPYRP  S
Sbjct: 1   MKGSTEKSKKQ-DDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS 60

Query: 61  SPEDCYTAGSDPPSTAVDPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 109
           S EDCYTAGS+PPSTAVDPP D+SEEESEYYRPHVPP PPWSTGGGGQ D
Sbjct: 61  SLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of ClCG08G002880 vs. TrEMBL
Match: A0A0A0K8Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 13  DDEETGLHSHCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPSSPEDCYTAGSDPPS 72
           DD++  +H HC  FL+I   +FQ  +A  RFLGF     P    PSS ED Y     PP 
Sbjct: 3   DDDD--VHDHCPFFLSIFKLVFQITMAFYRFLGFC---VPSSTLPSS-EDSYPVDPHPPP 62

Query: 73  TAVDPPDDES-EEESEYYRPHVPPPPPWSTGGGGQTD 109
              DPP + S EEE E+ R + PPPPP S GGGG+T+
Sbjct: 63  KTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

[Close]

BLAST of ClCG08G002880 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 85/108 (78.70%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 1   MKDSSEKSKKQVDDEETGLHS--HCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPS 60
           MKDS+EKSKKQ D+E + LH   HC I LTI DSI QAFIAILRF GF  N PPYRP  S
Sbjct: 40  MKDSTEKSKKQADNE-SDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASS 99

Query: 61  SPEDCYTAGSDPPSTAVDPPDDESEEESEYYRPHVPPPPPWSTGGGGQ 107
           S EDCYTAGS+PPSTAVDPP D+SEEESEYYRPHVPPPPPWSTGGGGQ
Sbjct: 100 SLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of ClCG08G002880 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.6e-39
Identity = 82/110 (74.55%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 1   MKDSSEKSKKQVDDEETGLHS--HCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPS 60
           MK S+EKSKKQ DD E+ LH   HC I LTI DSI Q FI+ILRF GF  + PPYRP  S
Sbjct: 1   MKGSTEKSKKQ-DDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS 60

Query: 61  SPEDCYTAGSDPPSTAVDPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 109
           S EDCYTAGS+PPSTAVDPP D+SEEESEYYRPHVPP PPWSTGGGGQ D
Sbjct: 61  SLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of ClCG08G002880 vs. NCBI nr
Match: gi|659128738|ref|XP_008464347.1| (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 1   MKDSSEKSKKQVDDEETGLHSHCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPSSP 60
           +++S+E +K+  DD    +H HC  FL+I + +FQ  +A  RFLGF      +RP  SS 
Sbjct: 14  IENSNENTKELNDDV---VHDHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILSSS 73

Query: 61  EDCYTAGSDPPSTAVDPP-DDESEEESEYYRPHVPPPPPWSTGGGGQTD 109
           ED Y   S PP T VDPP +D  EEE E+ R + PPPPP S GGGG+T+
Sbjct: 74  EDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

[Close]

BLAST of ClCG08G002880 vs. NCBI nr
Match: gi|700190699|gb|KGN45903.1| (hypothetical protein Csa_6G020170 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 13  DDEETGLHSHCHIFLTICDSIFQAFIAILRFLGFNHNGPPYRPTPSSPEDCYTAGSDPPS 72
           DD++  +H HC  FL+I   +FQ  +A  RFLGF     P    PSS ED Y     PP 
Sbjct: 3   DDDD--VHDHCPFFLSIFKLVFQITMAFYRFLGFC---VPSSTLPSS-EDSYPVDPHPPP 62

Query: 73  TAVDPPDDES-EEESEYYRPHVPPPPPWSTGGGGQTD 109
              DPP + S EEE E+ R + PPPPP S GGGG+T+
Sbjct: 63  KTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

The following BLAST results are available for this feature:

BLAST of ClCG08G002880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4_CUCSA	3.9e-39	74.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1	[more]
A0A0A0K8Z6_CUCSA	2.6e-11	46.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1	[more]

BLAST of ClCG08G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128740\|ref\|XP_008464348.1\|	3.5e-41	78.70	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
gi\|449441177\|ref\|XP_004138360.1\|	5.6e-39	74.55	PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus]	[more]
gi\|659128738\|ref\|XP_008464347.1\|	1.3e-16	46.79	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo]	[more]
gi\|700190699\|gb\|KGN45903.1\|	3.8e-11	46.39	hypothetical protein Csa_6G020170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002880.1	ClCG08G002880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G002880	Csa6G020160	Cucumber (Chinese Long) v2	cuwcgB513
ClCG08G002880	Cla002456	Watermelon (97103) v1	wcgwmB406
ClCG08G002880	Cla97C08G146740	Watermelon (97103) v2	wcgwmbB336
ClCG08G002880	Bhi04G001727	Wax gourd	wcgwgoB633
ClCG08G002880	CSPI06G02700	Wild cucumber (PI 183967)	cpiwcgB540
ClCG08G002880	Cucsa.365730	Cucumber (Gy14) v1	cgywcgB622
ClCG08G002880	CmaCh09G011730	Cucurbita maxima (Rimu)	cmawcgB035
ClCG08G002880	Lsi08G002660	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002880	CsGy6G002800	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002880	MELO3C026145.2	Melon (DHL92) v3.6.1	medwcgB290
ClCG08G002880	CsaV3_6G002930	Cucumber (Chinese Long) v3	cucwcgB533

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002880	Wax gourd	wcgwgoB617
ClCG08G002880	Melon (DHL92) v3.5.1	mewcgB306
ClCG08G002880	Watermelon (97103) v1	wcgwmB410
ClCG08G002880	Bottle gourd (USVL1VR-Ls)	lsiwcgB445
ClCG08G002880	Cucumber (Gy14) v2	cgybwcgB472