Csa6G020160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G020160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2143193 .. 2144021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAGAAACGAAAATTCAAGGCAAGATTTCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGTAAGCCTATCTCTCTCGACTCTCTCCCTCTTTTTATGTTATTTTATTTTAATTTAACTCTTCCAAATACTGAACATTAAGTTTTAAGTGTATAACTTATAGAACCCTGCGGATGAAATTGAAATGATATACAAATTAAATTTTCAAGAGCAACGTGCTGACAATATAAAACAGAAACAGGGTTTACATTAATTGGACCATTTTTGACGAACTTTTCTGTACAATAACTTCAATTTTAAAGATTGTGTTGCGTTTTTCTGTAGGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAATATGTATATTGTAATAATCAGGTGTGGCTGGTTTGTATGATCTAAAGTAATCTAAAGCTTGAGATCTTTGTAGCTATGGTTACATGAATTAGAGTGTATGAAGTAGCAGAAAGAAAAGAAATTCCAAGCTTCCTAGTTATTTAATTTAGTGATTGTATTATAAATTTATTCTTTGATTTTT

mRNA sequence

ATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Coding sequence (CDS)

ATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Protein sequence

MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID*

Homology

[Close]

BLAST of Csa6G020160 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-59
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 110
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of Csa6G020160 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 3.8e-59
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 110
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of Csa6G020160 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-54
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           MK STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 109
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 147

[Close]

BLAST of Csa6G020160 vs. NCBI nr
Match: gi|659128738|ref|XP_008464347.1| (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60
           ++ S E +K+ +D+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  SS
Sbjct: 14  IENSNENTKELNDDV--VHD--HCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILSS 73

Query: 61  LEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 108
            ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

The following BLAST results are available for this feature:

BLAST of Csa6G020160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4_CUCSA	2.6e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1	[more]

BLAST of Csa6G020160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441177\|ref\|XP_004138360.1\|	3.8e-59	100.00	PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus]	[more]
gi\|659128740\|ref\|XP_008464348.1\|	4.8e-54	94.44	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
gi\|659128738\|ref\|XP_008464347.1\|	1.3e-11	41.67	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU169807	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G020160.1	Csa6G020160.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU169807	CU169807	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G020160	Cla002456	Watermelon (97103) v1	cuwmB463
Csa6G020160	MELO3C026145	Melon (DHL92) v3.5.1	cumeB418
Csa6G020160	ClCG08G002880	Watermelon (Charleston Gray)	cuwcgB513
Csa6G020160	Lsi08G002660	Bottle gourd (USVL1VR-Ls)	culsiB471
Csa6G020160	MELO3C026145.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G020160	Cla97C08G146740	Watermelon (97103) v2	cuwmbB504
Csa6G020160	Bhi04G001725	Wax gourd	cuwgoB589
Csa6G020160	CSPI06G02700	Wild cucumber (PI 183967)	cpicuB314
Csa6G020160	Cucsa.365730	Cucumber (Gy14) v1	cgycuB511
Csa6G020160	CsGy6G002800	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G020160	Watermelon (Charleston Gray)	cuwcgB500
Csa6G020160	Watermelon (97103) v1	cuwmB462
Csa6G020160	Watermelon (97103) v1	cuwmB475
Csa6G020160	Watermelon (97103) v2	cuwmbB490