Cucsa.365730 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.365730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03611 : 3597777 .. 3599212 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCACACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGTAAGCCTATCTCTCTCGACTCTCTCCCTCTTTTTATGTTATTTTATTTTAATTTAACTCTTCCAAATACTGAACATTAAGTTTTAAGTGTATAACTTATAGAACCCTGCGGATGAAATTGAAATGATATACAAATTAAATTTTCAAGAGCAACGTGCTGACAATATAAAACAGAAACAGGGTTTACATTAATTGGACCATTTTTGACGAACTTTTCTGTACAATAACTTCAATTTTAAAGATTGTGTTGCGTTTTTCTGTAGGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAATATGTATATTGTAATAATCAGGTGTGGCTGGTTTGTATGATCTAAAGTAATCTAAAGCTTGAGATCTTTGTAGCTA

mRNA sequence

TCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCACACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAATATGTATATTGTAATAATCAGGTGTGGCTGGTTTGTATGATCTAAAGTAATCTAAAGCTTGAGATCTTTGTAGCTA

Coding sequence (CDS)

ATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCACACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Protein sequence

MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSTLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID*
Homology
[Close]
BLAST of Cucsa.365730 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 5.9e-59
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASST 60
           MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS+
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 110
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]
BLAST of Cucsa.365730 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 8.4e-59
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASST 60
           MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS+
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 110
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]
BLAST of Cucsa.365730 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASST 60
           MK STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASS+
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 109
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 147

[Close]
BLAST of Cucsa.365730 vs. NCBI nr
Match: gi|659128738|ref|XP_008464347.1| (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1 

Query: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASST 60
           ++ S E +K+ +D+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  S+
Sbjct: 14  IENSNENTKELNDDV--VHD--HCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILSS 73

Query: 61  LEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 108
            ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 74  SEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

The following BLAST results are available for this feature:
BLAST of Cucsa.365730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBZ4_CUCSA5.9e-5999.08Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1[more]
BLAST of Cucsa.365730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441177|ref|XP_004138360.1|8.4e-5999.08PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus][more]
gi|659128740|ref|XP_008464348.1|1.1e-5393.52PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo][more]
gi|659128738|ref|XP_008464347.1|2.9e-1140.74PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365730.2Cucsa.365730.2mRNA
Cucsa.365730.1Cucsa.365730.1mRNA