CmaCh09G011730.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011730.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr09 : 7219972 .. 7220769 (+)
Sequence length	708

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCAACAAAGACATAGAGACACTCTTATCCGCAAAACCATAGATCAATCCACGACACAAATTCTTAACTTTCGTGGAAAAATAGGAAACAAAATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGTAAGTACCTCTTTCTCTTACTGTGTTTCCTTCTTTTTCCTATGAGAAACAAAATGAAGAATTAATATATATATTTCTTGGGTTTGATAGGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTGGGCTTCCCAAAAAACACTATCTCTAAACCCTAAAAATAGTGTATGAAGTAGCAGTGGGTTTATAATCAAAGAACACTATCTCTATGGGTACGAGGCTTTTTGGGCTTCCCAAAAAGCAAAGCATGAGAGCTTATGCTCAAAGTGAAGAATATCATCCCATTGGAGAAAATCGTATTCATCTAACGTGGTATCAGAGTCATACTCATATCAATAGAATTCAATCTGTCAATTAAGGAGAGACGTACTTTATTCGAGGAGGGAATGATCA

mRNA sequence

GAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCAACAAAGACATAGAGACACTCTTATCCGCAAAACCATAGATCAATCCACGACACAAATTCTTAACTTTCGTGGAAAAATAGGAAACAAAATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTGGGCTTCCCAAAAAACACTATCTCTAAACCCTAAAAATAGTGTATGAAGTAGCAGTGGGTTTATAATCAAAGAACACTATCTCTATGGGTACGAGGCTTTTTGGGCTTCCCAAAAAGCAAAGCATGAGAGCTTATGCTCAAAGTGAAGAATATCATCCCATTGGAGAAAATCGTATTCATCTAACGTGGTATCAGAGTCATACTCATATCAATAGAATTCAATCTGTCAATTAAGGAGAGACGTACTTTATTCGAGGAGGGAATGATCA

Coding sequence (CDS)

ATGGAGAATTCAACGGAAAGGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCCTCCTACACTTTTTCATCGCCATTTTGAGGTCTTTCGGATTTAATCACCATGGACGTTACCGACCAACACCCGATGAATCTGAGGAGGAAAGTGAGTACTTCAAAGGACATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAA

Protein sequence

MENSTERTNKLTDEPDVHSHSTLCDCLLHFFIAILRSFGFNHHGRYRPTPDESEEESEYFKGHAPPPPPWSTGGGGQTD

Homology

[Close]

BLAST of CmaCh09G011730.1 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 45/109 (41.28%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M+ STE++ K  D E D+H         T+ D +L  FI+ILR FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQTD 80
                               D+SEEESEY++ H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of CmaCh09G011730.1 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M++STE++ K  D E D+H         T+ D +L  FIAILR FGF  +   YRP    
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQ 78
                               D+SEEESEY++ H PPPPPWSTGGGGQ
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of CmaCh09G011730.1 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 45/109 (41.28%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 1   MENSTERTNKLTD-EPDVHSHS------TLCDCLLHFFIAILRSFGFNHHGR-YRPTP-- 60
           M+ STE++ K  D E D+H         T+ D +L  FI+ILR FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DESEEESEYFKGHAPPPPPWSTGGGGQTD 80
                               D+SEEESEY++ H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

The following BLAST results are available for this feature:

BLAST of CmaCh09G011730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4_CUCSA	2.6e-08	41.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1	[more]

BLAST of CmaCh09G011730.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128740\|ref\|XP_008464348.1\|	1.5e-09	42.99	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
gi\|449441177\|ref\|XP_004138360.1\|	3.7e-08	41.28	PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G011730	CmaCh09G011730	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011730.1	CmaCh09G011730.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011730.1.exon.1	CmaCh09G011730.1.exon.1	exon
CmaCh09G011730.1.exon.2	CmaCh09G011730.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011730.1.five_prime_UTR.1	CmaCh09G011730.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011730.1.CDS.1	CmaCh09G011730.1.CDS.1	CDS
CmaCh09G011730.1.CDS.2	CmaCh09G011730.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011730.1.three_prime_UTR.1	CmaCh09G011730.1.three_prime_UTR.1	three_prime_UTR