Cp4.1LG00g02480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g02480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG00 : 7857131 .. 7857824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAATGAGTGAGGTGGGCTAACAATAAAGAACCTCGAAGAAAAACAATAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCACACAAACACATAGAGACACCCTTATCCGCAAAACCATAGATCAAACCACGACACAAATTCTTAACTTTTTGTGGAAAAATAGGAAACAAAATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGGTATTTCGGATTTAATCACCGTGGACGTTACCGACCAACACCCGATGAACCTGTAAGTCGCTCTTTCTCTTACTGTGTTTTCCTTTTTTTTCTCTTAATTTAAAAAATACGACGAGAAAGAAAATGAAGAATTAATATATATATATGTTTGTGTTGGGTTTGATAGGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTATAGTGTATGAAGTAGCAAACCAAAATTCCAAGCTTCTCTCTTTCTATAATTTAAAATAATTTATTAATTACTTTTTTTAATTTCAAAA

mRNA sequence

AAAAGAATGAGTGAGGTGGGCTAACAATAAAGAACCTCGAAGAAAAACAATAGTAGGTAGCACATTGAATCCTTTTATTGTGTATGTGTACATATTTAAGAGCCACACAAACACATAGAGACACCCTTATCCGCAAAACCATAGATCAAACCACGACACAAATTCTTAACTTTTTGTGGAAAAATAGGAAACAAAATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGGTATTTCGGATTTAATCACCGTGGACGTTACCGACCAACACCCGATGAACCTGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTATAGTGTATGAAGTAGCAAACCAAAATTCCAAGCTTCTCTCTTTCTATAATTTAAAATAATTTATTAATTACTTTTTTTAATTTCAAAA

Coding sequence (CDS)

ATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGGTATTTCGGATTTAATCACCGTGGACGTTACCGACCAACACCCGATGAACCTGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAA

Protein sequence

MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILRYFGFNHRGRYRPTPDEPEEESEYFRGHAPPPPPWSTGGGGQTD
Homology
[Close]
BLAST of Cp4.1LG00g02480 vs. TrEMBL
Match: A0A0A0KBZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 46/109 (42.20%), Postives = 54/109 (49.54%), Query Frame = 1 

Query: 1   MENSTTKTNKLTD-EPDVHSHS------TLCDCILHFFIAILRYFGFNHRGR-YRPTP-- 60
           M+ ST K+ K  D E D+H         T+ D IL  FI+ILR+FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQTD 80
                               D+ EEESEY+R H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]
BLAST of Cp4.1LG00g02480 vs. NCBI nr
Match: gi|659128740|ref|XP_008464348.1| (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 1 

Query: 1   MENSTTKTNKLTD-EPDVHSHS------TLCDCILHFFIAILRYFGFNHRGR-YRPTP-- 60
           M++ST K+ K  D E D+H         T+ D IL  FIAILR+FGF      YRP    
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQ 78
                               D+ EEESEY+R H PPPPPWSTGGGGQ
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]
BLAST of Cp4.1LG00g02480 vs. NCBI nr
Match: gi|449441177|ref|XP_004138360.1| (PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 46/109 (42.20%), Postives = 54/109 (49.54%), Query Frame = 1 

Query: 1   MENSTTKTNKLTD-EPDVHSHS------TLCDCILHFFIAILRYFGFNHRGR-YRPTP-- 60
           M+ ST K+ K  D E D+H         T+ D IL  FI+ILR+FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQTD 80
                               D+ EEESEY+R H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g02480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g02480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBZ4_CUCSA2.6e-0842.20Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020160 PE=4 SV=1[more]
BLAST of Cp4.1LG00g02480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g02480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128740|ref|XP_008464348.1|1.5e-0943.93PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo][more]
gi|449441177|ref|XP_004138360.1|3.7e-0842.20PREDICTED: uncharacterized protein LOC101208454 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g02480.1Cp4.1LG00g02480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g02480CmaCh09G011730Cucurbita maxima (Rimu)cmacpeB025
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None