CmaCh07G003040 (gene) Cucurbita maxima (Rimu)

NameCmaCh07G003040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_12
LocationCma_Chr07 : 1342368 .. 1342736 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAGGACGAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGACGATATCACCCACTTTCCCATTTGA

mRNA sequence

ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAGGACGAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGACGATATCACCCACTTTCCCATTTGA

Coding sequence (CDS)

ATGTATGAAGGCATCAGCAGAAGCAGTAGCTTCTCTGAGGAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTATGGGGTCGCTGGTTATGAAGGAGATTGAGTACTTCACCAAGCTAGAGCTCGAACGCCATGGCGGCTCTCAGCGGTTAAGTGGAGATGCTTCCAGGAGAAGCGATTCGAGGACGAGCTTTTGGCTTTTGTCGTTGAGTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTCTCCCCAACATTTGCTCTGCTGTCGAATTGTCAAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGACGATATCACCCACTTTCCCATTTGA

Protein sequence

MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITHFPI
BLAST of CmaCh07G003040 vs. TrEMBL
Match: A0A0A0KL84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.8e-48
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 1

Query: 1   MYEGISRSSSFSEEM-GAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDAS 60
           MY+G+SRS SFSE+M GAVAPLAIGTRGT+GSLVMKEIEYFTKLELERHG S  +SG+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITH 120
           RRSDSR SFWLLSL+WKWKKR+ NNG+LPNI SAVE SKSNRFNGIPGFGYRILKDD   
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDD--- 120

Query: 121 FPI 123
           FPI
Sbjct: 121 FPI 120

BLAST of CmaCh07G003040 vs. TrEMBL
Match: B9H1E3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01820g PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-28
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 2   YEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQR----LSGD 61
           Y+  + ++ F E+M A AP+AIGTRGT+GSLV KEIEYF+K E++R   S++    ++  
Sbjct: 3   YKASTITTKFPEKMAATAPVAIGTRGTVGSLVRKEIEYFSKFEIDRCASSRKPQEQVADI 62

Query: 62  ASRRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDD 117
           AS    SR SFW L++SWK KKRR ++G LP+ICSAVE++ SNR + IPGF YRILKDD
Sbjct: 63  ASSNGQSRPSFWSLTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 121

BLAST of CmaCh07G003040 vs. TrEMBL
Match: A9P9Y1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1

Query: 15  MGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQR----LSGDASRRSDSRTSFWL 74
           M A AP+AIGTRGT+GSLV KEIEYF+K E++R   S++    ++  AS    SR SFW 
Sbjct: 1   MAATAPVAIGTRGTVGSLVRKEIEYFSKFEIDRCASSRKPQEQVADIASSNGQSRPSFWS 60

Query: 75  LSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDD 117
           L++SWK KKRR ++G LP+ICSAVE++ SNR + IPGF YRILKDD
Sbjct: 61  LTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 106

BLAST of CmaCh07G003040 vs. TrEMBL
Match: A5C4M7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030805 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-26
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1

Query: 2   YEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGG--SQR------ 61
           Y+    ++   E M A AP+ +GTRGT+GSLVMKEIEYF++LEL+RHG   SQR      
Sbjct: 3   YKASCTATKCPERMAAKAPVEVGTRGTVGSLVMKEIEYFSRLELDRHGSGSSQRSQAHVV 62

Query: 62  --LSGDASRRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYR 118
              SG   R   SR  FW L ++W+ KKRR++   LP+ICS VE++ S+R NGIPGF YR
Sbjct: 63  DVASGSTGR---SRHRFWFLIMTWRRKKRRSSRTFLPSICSVVEVADSHRLNGIPGFNYR 122

BLAST of CmaCh07G003040 vs. TrEMBL
Match: F6H7M7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00840 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-26
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1

Query: 2   YEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGG--SQR------ 61
           Y+    ++   E M A AP+ +GTRGT+GSLVMKEIEYF++LEL+RHG   SQR      
Sbjct: 3   YKASCTATKCPERMAAKAPVEVGTRGTVGSLVMKEIEYFSRLELDRHGSGSSQRSQAHVV 62

Query: 62  --LSGDASRRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYR 118
              SG   R   SR  FW L ++W+ KKRR++   LP+ICS VE++ S+R NGIPGF YR
Sbjct: 63  DVASGSTGR---SRHRFWFLIMTWRRKKRRSSRTFLPSICSVVEVADSHRLNGIPGFNYR 122

BLAST of CmaCh07G003040 vs. TAIR10
Match: AT4G21780.1 (AT4G21780.1 unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 1

Query: 19  APLAIGTRGTMGSLVMKEIEYFTKLEL------ERHGGSQRLSGDASR--RSDSRTSFWL 78
           AP+AIGTRGT+GSLV KEI+YF            R G S+       +  RS SR   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79  LSLSWKWKKRRTNNG---ILPNICSAVELSKSNRFNGIPGFGYRILKDD 117
               W+ KKR+T  G     P++CSAVE+S  NR   +PGF YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

BLAST of CmaCh07G003040 vs. NCBI nr
Match: gi|778722526|ref|XP_011658506.1| (PREDICTED: uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 9.7e-48
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 1

Query: 1   MYEGISRSSSFSEEM-GAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDAS 60
           MY+G+SRS SFSE+M GAVAPLAIGTRGT+GSLVMKEIEYFTKLELERHG S  +SG+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITH 120
           RRSDSR SFWLLSL+WKWKKR+ NNG+LPNI SAVE SKSNRFNGIPGFGYRILKDD   
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDD--- 120

Query: 121 FPI 123
           FPI
Sbjct: 121 FPI 120

BLAST of CmaCh07G003040 vs. NCBI nr
Match: gi|659081006|ref|XP_008441098.1| (PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 4.8e-47
Identity = 99/123 (80.49%), Postives = 108/123 (87.80%), Query Frame = 1

Query: 1   MYEGISRSSSFSEEM-GAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDAS 60
           MY+G+SRS SFSE+M GAVAPLAIGTRGT+GSLVMKEIEYFT LELERHG S  + G+A 
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITH 120
           RRSDS+ SFWLLSL+WKWKKR+ NNGILPNI SAVE SKSNRFNGIPGFGYRILKDD   
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDD--- 120

Query: 121 FPI 123
           FPI
Sbjct: 121 FPI 120

BLAST of CmaCh07G003040 vs. NCBI nr
Match: gi|1009108313|ref|XP_015884100.1| (PREDICTED: uncharacterized protein LOC107419798 [Ziziphus jujuba])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 1

Query: 8   SSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQR-----LSGDASRRS 67
           ++ F+E M A APLAIGTRGT+GSLV KEIEYFTKLEL+R+G S++     +   +  RS
Sbjct: 16  TTKFTEIMAAAAPLAIGTRGTVGSLVRKEIEYFTKLELDRNGSSRKPRSHVVDMGSCGRS 75

Query: 68  DSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITHFPI 123
           +SR+ FW L+++WK KK + + G LP ICS  E+S++NR NGI GF Y ILKDD+ +F +
Sbjct: 76  NSRSGFWFLTMTWKRKKPKVSRGFLPRICSVSEVSETNRLNGISGFNYMILKDDVKYFDV 135

BLAST of CmaCh07G003040 vs. NCBI nr
Match: gi|566164423|ref|XP_002305590.2| (hypothetical protein POPTR_0004s01820g [Populus trichocarpa])

HSP 1 Score: 132.1 bits (331), Expect = 6.5e-28
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 2   YEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQR----LSGD 61
           Y+  + ++ F E+M A AP+AIGTRGT+GSLV KEIEYF+K E++R   S++    ++  
Sbjct: 3   YKASTITTKFPEKMAATAPVAIGTRGTVGSLVRKEIEYFSKFEIDRCASSRKPQEQVADI 62

Query: 62  ASRRSDSRTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDD 117
           AS    SR SFW L++SWK KKRR ++G LP+ICSAVE++ SNR + IPGF YRILKDD
Sbjct: 63  ASSNGQSRPSFWSLTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 121

BLAST of CmaCh07G003040 vs. NCBI nr
Match: gi|118482524|gb|ABK93184.1| (unknown [Populus trichocarpa])

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-26
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1

Query: 15  MGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQR----LSGDASRRSDSRTSFWL 74
           M A AP+AIGTRGT+GSLV KEIEYF+K E++R   S++    ++  AS    SR SFW 
Sbjct: 1   MAATAPVAIGTRGTVGSLVRKEIEYFSKFEIDRCASSRKPQEQVADIASSNGQSRPSFWS 60

Query: 75  LSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDD 117
           L++SWK KKRR ++G LP+ICSAVE++ SNR + IPGF YRILKDD
Sbjct: 61  LTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KL84_CUCSA6.8e-4882.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514830 PE=4 SV=1[more]
B9H1E3_POPTR4.6e-2855.46Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01820g PE=4 SV=1[more]
A9P9Y1_POPTR4.3e-2659.43Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A5C4M7_VITVI5.6e-2652.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030805 PE=4 SV=1[more]
F6H7M7_VITVI5.6e-2652.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00840 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G21780.13.2e-1745.87 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778722526|ref|XP_011658506.1|9.7e-4882.11PREDICTED: uncharacterized protein LOC105436036 [Cucumis sativus][more]
gi|659081006|ref|XP_008441098.1|4.8e-4780.49PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo][more]
gi|1009108313|ref|XP_015884100.1|1.3e-2854.17PREDICTED: uncharacterized protein LOC107419798 [Ziziphus jujuba][more]
gi|566164423|ref|XP_002305590.2|6.5e-2855.46hypothetical protein POPTR_0004s01820g [Populus trichocarpa][more]
gi|118482524|gb|ABK93184.1|6.1e-2659.43unknown [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0050665 hydrogen peroxide biosynthetic process
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0016926 protein desumoylation
biological_process GO:0009620 response to fungus
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016780 phosphotransferase activity, for other substituted phosphate groups
molecular_function GO:0047714 galactolipase activity
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G003040.1CmaCh07G003040.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35131FAMILY NOT NAMEDcoord: 1..120
score: 1.2
NoneNo IPR availablePANTHERPTHR35131:SF1SUBFAMILY NOT NAMEDcoord: 1..120
score: 1.2

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G003040Cucsa.045320Cucumber (Gy14) v1cgycmaB0048
CmaCh07G003040Cla014461Watermelon (97103) v1cmawmB826
CmaCh07G003040Cla019394Watermelon (97103) v1cmawmB820
CmaCh07G003040Csa6G514830Cucumber (Chinese Long) v2cmacuB877
CmaCh07G003040Csa1G063600Cucumber (Chinese Long) v2cmacuB848
CmaCh07G003040MELO3C007381Melon (DHL92) v3.5.1cmameB798
CmaCh07G003040MELO3C002469Melon (DHL92) v3.5.1cmameB782
CmaCh07G003040ClCG01G022080Watermelon (Charleston Gray)cmawcgB754
CmaCh07G003040ClCG03G004870Watermelon (Charleston Gray)cmawcgB760
CmaCh07G003040CSPI01G10840Wild cucumber (PI 183967)cmacpiB865
CmaCh07G003040CSPI06G33660Wild cucumber (PI 183967)cmacpiB893
CmaCh07G003040CmoCh03G005530Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G003040CmoCh13G007560Cucurbita moschata (Rifu)cmacmoB847
CmaCh07G003040CmoCh07G002930Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G003040Lsi02G006130Bottle gourd (USVL1VR-Ls)cmalsiB796
CmaCh07G003040Lsi01G004160Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G003040Cp4.1LG09g09010Cucurbita pepo (Zucchini)cmacpeB859
CmaCh07G003040Cp4.1LG19g07760Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G003040MELO3C002469.2Melon (DHL92) v3.6.1cmamedB883
CmaCh07G003040MELO3C007381.2Melon (DHL92) v3.6.1cmamedB897
CmaCh07G003040CsaV3_6G049140Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G003040CsaV3_1G010900Cucumber (Chinese Long) v3cmacucB1005
CmaCh07G003040Cla97C01G021730Watermelon (97103) v2cmawmbB875
CmaCh07G003040Cla97C03G056020Watermelon (97103) v2cmawmbB888
CmaCh07G003040Bhi08G001524Wax gourdcmawgoB1081
CmaCh07G003040Bhi03G000434Wax gourdcmawgoB1058
CmaCh07G003040CsGy6G033200Cucumber (Gy14) v2cgybcmaB861
CmaCh07G003040CsGy1G010720Cucumber (Gy14) v2cgybcmaB142
CmaCh07G003040Carg13706Silver-seed gourdcarcmaB1279
CmaCh07G003040Carg07833Silver-seed gourdcarcmaB0914
CmaCh07G003040Carg07536Silver-seed gourdcarcmaB1399
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G003040CmaCh13G007280Cucurbita maxima (Rimu)cmacmaB238
CmaCh07G003040CmaCh03G005310Cucurbita maxima (Rimu)cmacmaB523