CmaCh05G001990 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G001990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Succinate dehydrogenase 5
Location	Cma_Chr05 : 846947 .. 849022 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCTAAATGGCCCAACAATGTCGGCCCCAAAAACAAATAAAGAAGAAATGGAGGGAGGCACTCCTCTCTGAAATTGGATATCAACTCTCTTCTTTTATTACCCGGTCATCGAACAGCCTCTTGTCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGGTATTCCTCCTAATTAGTATACTTACAGCCTATTTATTATAGATTCAAATCTCTCCTGATTAATTTTGGAAAGAAGCGGAATTTCTGATGAAGTCATTCGCTATTCTTTATTCAACTTAATTAATGCTAGCTATTGATTTTCTCAGTTGGTTGCTGATATGCTTGTGTCTTACTGGTGATTAGTTAAATGTATAGATCTTCTACCATGAATTGCACATACAGATGTAGTTCTTACAAATCAAAATTTTGCTTGCTATATTTGTACAGTAAACTGCTATGTTCTTTTCTGCATTAGTATTTATCATCAAGTCTTCCTAGTGTTCGCAATTTGTGGTTAGTTTTGTTGAAATGCCGAGTTTCTTTAAGTGCCCCTTGTTACTTTAAGCAATGCTTTTGTCTTAAAGAATTGTAACAAAATAAATCTCGTATCAGAGAGAAGGAATATCAACTAAAGTTTTAAAATTTCAACAATTCTGGGTAGAAATGTGCACTGTGCAAAGTTTTATTGTTTCAGCTCGCTGCAATGTGAAGTGACTGAATAACGTTGATAGACCGAATTAAATTATTTTTTCAGTATTATAATGTTTGAAAATAAATCATATGCCTGTTTCTTCTGGTAAATTTCAGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGTATTGGAAATTATACATTTATCAAATTAATTTTTTTTTCCTCTCCAGATTCTTATCAAGTGAAAACTTCGGAGTCTATGTACAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTAAAAAGCTTCTCGCTATATAGTTTGTTAATTGCAATTTTCAAATAAATAAGTTGGTGAAACGAGTATTGATCATTAAGCAATTTTTGTTAACCATAGCTTCTATTTTATTTTACGACAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCGTTGAAAGTTTGGCTGTAGTTGCTAGCCTACTCTAGTTTGGGTGTTTGTTTTTCAATTTTTACTGTCTGCTTCTCTCAAATCCAAAAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCAGAATTTAACTTCCTTGCATGTTTGTCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTGCTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTTATGAGGTG

mRNA sequence

GGCCTAAATGGCCCAACAATGTCGGCCCCAAAAACAAATAAAGAAGAAATGGAGGGAGGCACTCCTCTCTGAAATTGGATATCAACTCTCTTCTTTTATTACCCGGTCATCGAACAGCCTCTTGTCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCGTTGAAAGTTTGGCTGTAGTTGCTAGCCTACTCTAGTTTGGGTGTTTGTTTTTCAATTTTTACTGTCTGCTTCTCTCAAATCCAAAAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCAGAATTTAACTTCCTTGCATGTTTGTCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTGCTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTTATGAGGTG

Coding sequence (CDS)

ATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Protein sequence

MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA

Homology

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BLAST of CmaCh05G001990 vs. Swiss-Prot
Match: SDH5_ARATH (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana GN=SDH5 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-62
Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 1


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGK++VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of CmaCh05G001990 vs. Swiss-Prot
Match: SDH5_ORYSJ (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH5 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-56
Identity = 104/171 (60.82%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 69  RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVEN 128
           R FS +  ++P I D ++++AFKDLMAASW  LP+S+V + K A S +T+DKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 129 VFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGP 188
           VFRAAEA E+FG +L+ L+M +DD  G++GE+V PL   ++ A+++ Y RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 189 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGKI+++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

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BLAST of CmaCh05G001990 vs. TrEMBL
Match: A0A0A0LP60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.1e-106
Identity = 203/238 (85.29%), Postives = 218/238 (91.60%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGY 61
           VILRSLLRSVRARSY IAGVTHRNLL+S+H  ARSFF L SHR SFSD P RVSS DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSS-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAAEAAE+FGD+LINLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY A
Sbjct: 125 GKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of CmaCh05G001990 vs. TrEMBL
Match: A0A067L1L3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04300 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.3e-73
Identity = 149/240 (62.08%), Postives = 187/240 (77.92%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHR-SSFSDFPLRVSSADC 60
           M+++RS+ R+   RS   A +TH  L   H LA+RS FSL S   S+ SDF         
Sbjct: 4   MMLVRSICRAASFRSSRFAAITHHQL--RHLLASRSIFSLSSPSVSTPSDFR-------S 63

Query: 61  GYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTED 120
            +  G+   R+FS DV ++P I D +++ AFKDLMAASWD LP+ ++YDVK ALS  T+D
Sbjct: 64  SFAMGIGSTRYFSQDVSHLPAIQDPEIKRAFKDLMAASWDELPDPLIYDVKNALSKKTDD 123

Query: 121 KAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRY 180
            AG+EI++NVFRAAEA E+F  ILI+LKME+DDSIG+SGE+V+PLS EL KAL TVY+RY
Sbjct: 124 NAGQEILKNVFRAAEAVEEFSGILISLKMELDDSIGMSGENVRPLSSELTKALSTVYERY 183

Query: 181 TAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           +AYLDAFGP+E+YLRKKVETELG+KMIYLKMRCSGLGSEWGK++VLGTSGL+GSYVEQR+
Sbjct: 184 SAYLDAFGPDESYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRS 234

[Close]

BLAST of CmaCh05G001990 vs. TrEMBL
Match: M5XHM0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010612mg PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.9e-72
Identity = 155/248 (62.50%), Postives = 187/248 (75.40%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKS--HHL---AARSFFSLLSH--RSSFSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L  S  HH    AAR+ FS  S   +  FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAALNQQLLCHSQPHHHNAGAARTLFSFSSPMVKDLFSD---- 63

Query: 61  VSSADCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKA 120
               DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KA
Sbjct: 64  ----DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKA 123

Query: 121 ALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKA 180
           A+S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   A
Sbjct: 124 AVSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNA 183

Query: 181 LQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLS 240
           L+T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWG+I+VLGTSGLS
Sbjct: 184 LKTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGRITVLGTSGLS 243

[Close]

BLAST of CmaCh05G001990 vs. TrEMBL
Match: A0A061FCR8_THECC (Succinate dehydrogenase 5 OS=Theobroma cacao GN=TCM_033877 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.7e-71
Identity = 148/240 (61.67%), Postives = 184/240 (76.67%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60
           M++LRS+ R+   RS   A V       +HHL +RSFFS+ S   S ++ P  + S    
Sbjct: 4   MMMLRSIYRAACIRSSRFAAVAAT--AHNHHLGSRSFFSVSS--PSAANQPRNLPSGGRS 63

Query: 61  YLS-GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTED 120
            L+  +   R+FS DV +MP I D ++QN FKDLMAASWD +P SVV D K ALS +T+D
Sbjct: 64  SLAVRLGSMRYFSEDVTHMPAIKDPEIQNVFKDLMAASWDEVPYSVVQDAKKALSKNTDD 123

Query: 121 KAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRY 180
           KAG+E ++N+FRAAEA E+FG +L+++KME+DDSIG+SGE+VKPLSDE   AL+TVY RY
Sbjct: 124 KAGQEALKNIFRAAEAVEEFGGVLMSMKMELDDSIGLSGENVKPLSDEFVNALRTVYQRY 183

Query: 181 TAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           T YLDAFGP+E YLRKKVETELG+KMIYLKMRCSGLGSEWGK++VLGTSGLSGSYVEQRA
Sbjct: 184 TTYLDAFGPDETYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 239

[Close]

BLAST of CmaCh05G001990 vs. TrEMBL
Match: A0A151S807_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027283 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.8e-71
Identity = 147/241 (61.00%), Postives = 184/241 (76.35%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60
           M+ LRSL+RS+ +RSY             H  A+ S F+L     S    PL  SS++C 
Sbjct: 4   MMRLRSLIRSLSSRSY-------------HSFASTSHFALRPSLLSRPHNPLP-SSSECR 63

Query: 61  --YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTE 120
             +  G+   RF+S DV +MP I DT+L NAFKDLMA SW  LP+SVV+ VK ALS +T+
Sbjct: 64  PPFSMGLGRMRFYSEDVTHMPNIKDTELYNAFKDLMAESWSELPDSVVHGVKNALSKNTD 123

Query: 121 DKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDR 180
           DKAGKE+VENVFRAAEA E+FG IL++LK+EIDDSIG+SGEDVKPL D +K AL+T++DR
Sbjct: 124 DKAGKEVVENVFRAAEAVEEFGGILVSLKLEIDDSIGMSGEDVKPLPDHIKNALRTIFDR 183

Query: 181 YTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQR 240
           Y+ YL++FGP+E+YLRKKVE ELG KMI+LKMRCSGLG+EWGK++VLGTSGL+GSYVEQR
Sbjct: 184 YSTYLNSFGPDESYLRKKVEIELGAKMIHLKMRCSGLGAEWGKVTVLGTSGLAGSYVEQR 230

[Close]

BLAST of CmaCh05G001990 vs. TAIR10
Match: AT1G47420.1 (AT1G47420.1 succinate dehydrogenase 5)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-63
Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 1


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGK++VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of CmaCh05G001990 vs. NCBI nr
Match: gi|449470049|ref|XP_004152731.1| (PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 3.1e-106
Identity = 203/238 (85.29%), Postives = 218/238 (91.60%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGY 61
           VILRSLLRSVRARSY IAGVTHRNLL+S+H  ARSFF L SHR SFSD P RVSS DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSS-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAAEAAE+FGD+LINLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY A
Sbjct: 125 GKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of CmaCh05G001990 vs. NCBI nr
Match: gi|659087792|ref|XP_008444638.1| (PREDICTED: uncharacterized protein At1g47420, mitochondrial [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 6.0e-102
Identity = 198/238 (83.19%), Postives = 211/238 (88.66%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGY 61
           VILRSLLRSVRARSY IAGVTHRNLL+S+H  ARS F L SHRSSFSD P RVS  DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSVFYLSSHRSSFSDSPQRVSY-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MP I D KL   FKDLMAASWD LPE V+Y+ K ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPAIQDPKLNIVFKDLMAASWDKLPEPVIYEAKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAA AAE+FGDILINLKMEIDDSIG+SGE+VKPLSDELKKAL TV+DRY A
Sbjct: 125 GKEIVENVFRAAVAAEEFGDILINLKMEIDDSIGLSGENVKPLSDELKKALHTVHDRYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of CmaCh05G001990 vs. NCBI nr
Match: gi|802592627|ref|XP_012071684.1| (PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas])

HSP 1 Score: 282.3 bits (721), Expect = 7.7e-73
Identity = 149/240 (62.08%), Postives = 187/240 (77.92%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHR-SSFSDFPLRVSSADC 60
           M+++RS+ R+   RS   A +TH  L   H LA+RS FSL S   S+ SDF         
Sbjct: 4   MMLVRSICRAASFRSSRFAAITHHQL--RHLLASRSIFSLSSPSVSTPSDFR-------S 63

Query: 61  GYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTED 120
            +  G+   R+FS DV ++P I D +++ AFKDLMAASWD LP+ ++YDVK ALS  T+D
Sbjct: 64  SFAMGIGSTRYFSQDVSHLPAIQDPEIKRAFKDLMAASWDELPDPLIYDVKNALSKKTDD 123

Query: 121 KAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRY 180
            AG+EI++NVFRAAEA E+F  ILI+LKME+DDSIG+SGE+V+PLS EL KAL TVY+RY
Sbjct: 124 NAGQEILKNVFRAAEAVEEFSGILISLKMELDDSIGMSGENVRPLSSELTKALSTVYERY 183

Query: 181 TAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           +AYLDAFGP+E+YLRKKVETELG+KMIYLKMRCSGLGSEWGK++VLGTSGL+GSYVEQR+
Sbjct: 184 SAYLDAFGPDESYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRS 234

[Close]

BLAST of CmaCh05G001990 vs. NCBI nr
Match: gi|645226782|ref|XP_008220201.1| (PREDICTED: uncharacterized protein At1g47420, mitochondrial [Prunus mume])

HSP 1 Score: 279.6 bits (714), Expect = 5.0e-72
Identity = 156/248 (62.90%), Postives = 188/248 (75.81%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKS--HHL---AARSFFSLLSHRSS--FSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L +S  HH    AAR+ FS  S  +   FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAVLNQQLLCQSQPHHNNAGAARTLFSFSSPMAKDLFSD---- 63

Query: 61  VSSADCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKA 120
               DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KA
Sbjct: 64  ----DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKA 123

Query: 121 ALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKA 180
           A+S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   A
Sbjct: 124 AVSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNA 183

Query: 181 LQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLS 240
           L+T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWGKI+VLGTSGLS
Sbjct: 184 LKTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGKITVLGTSGLS 243

[Close]

BLAST of CmaCh05G001990 vs. NCBI nr
Match: gi|596205691|ref|XP_007223782.1| (hypothetical protein PRUPE_ppa010612mg [Prunus persica])

HSP 1 Score: 278.9 bits (712), Expect = 8.5e-72
Identity = 155/248 (62.50%), Postives = 187/248 (75.40%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKS--HHL---AARSFFSLLSH--RSSFSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L  S  HH    AAR+ FS  S   +  FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAALNQQLLCHSQPHHHNAGAARTLFSFSSPMVKDLFSD---- 63

Query: 61  VSSADCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKA 120
               DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KA
Sbjct: 64  ----DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKA 123

Query: 121 ALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKA 180
           A+S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   A
Sbjct: 124 AVSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNA 183

Query: 181 LQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLS 240
           L+T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWG+I+VLGTSGLS
Sbjct: 184 LKTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGRITVLGTSGLS 243

The following BLAST results are available for this feature:

BLAST of CmaCh05G001990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDH5_ARATH	3.6e-62	67.05	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana GN=SDH5...	[more]
SDH5_ORYSJ	2.2e-56	60.82	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of CmaCh05G001990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP60_CUCSA	2.1e-106	85.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360050 PE=4 SV=1	[more]
A0A067L1L3_JATCU	5.3e-73	62.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04300 PE=4 SV=1	[more]
M5XHM0_PRUPE	5.9e-72	62.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010612mg PE=4 SV=1	[more]
A0A061FCR8_THECC	1.7e-71	61.67	Succinate dehydrogenase 5 OS=Theobroma cacao GN=TCM_033877 PE=4 SV=1	[more]
A0A151S807_CAJCA	3.8e-71	61.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_027283 PE=4 SV=1	[more]

BLAST of CmaCh05G001990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47420.1	2.0e-63	67.05	succinate dehydrogenase 5	[more]

BLAST of CmaCh05G001990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470049\|ref\|XP_004152731.1\|	3.1e-106	85.29	PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus]	[more]
gi\|659087792\|ref\|XP_008444638.1\|	6.0e-102	83.19	PREDICTED: uncharacterized protein At1g47420, mitochondrial [Cucumis melo]	[more]
gi\|802592627\|ref\|XP_012071684.1\|	7.7e-73	62.08	PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]	[more]
gi\|645226782\|ref\|XP_008220201.1\|	5.0e-72	62.90	PREDICTED: uncharacterized protein At1g47420, mitochondrial [Prunus mume]	[more]
gi\|596205691\|ref\|XP_007223782.1\|	8.5e-72	62.50	hypothetical protein PRUPE_ppa010612mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025397	DUF4370

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001990.1	CmaCh05G001990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Protein of unknown function DUF4370	PFAM	PF14290	DUF4370	coord: 1..239 score: 7.1E
None	No IPR available	PANTHER	PTHR36139	FAMILY NOT NAMED	coord: 1..239 score: 2.9
None	No IPR available	PANTHER	PTHR36139:SF1	SUBFAMILY NOT NAMED	coord: 1..239 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G001990	Cla022551	Watermelon (97103) v1	cmawmB753
CmaCh05G001990	Csa2G360050	Cucumber (Chinese Long) v2	cmacuB784
CmaCh05G001990	MELO3C010886	Melon (DHL92) v3.5.1	cmameB727
CmaCh05G001990	ClCG08G015700	Watermelon (Charleston Gray)	cmawcgB712
CmaCh05G001990	CSPI02G19390	Wild cucumber (PI 183967)	cmacpiB793
CmaCh05G001990	CmoCh12G004630	Cucurbita moschata (Rifu)	cmacmoB770
CmaCh05G001990	Lsi08G014510	Bottle gourd (USVL1VR-Ls)	cmalsiB739
CmaCh05G001990	Cp4.1LG07g04480	Cucurbita pepo (Zucchini)	cmacpeB797
CmaCh05G001990	MELO3C010886.2	Melon (DHL92) v3.6.1	cmamedB821
CmaCh05G001990	CsaV3_2G028080	Cucumber (Chinese Long) v3	cmacucB0926
CmaCh05G001990	Cla97C08G159280	Watermelon (97103) v2	cmawmbB832
CmaCh05G001990	Bhi04G000294	Wax gourd	cmawgoB0943
CmaCh05G001990	Carg25834	Silver-seed gourd	carcmaB0378
CmaCh05G001990	Carg11838	Silver-seed gourd	carcmaB0256

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G001990	CmaCh12G005220	Cucurbita maxima (Rimu)	cmacmaB199

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G001990	Watermelon (97103) v2	cmawmbB800
CmaCh05G001990	Watermelon (97103) v2	cmawmbB820
CmaCh05G001990	Wax gourd	cmawgoB0953
CmaCh05G001990	Wax gourd	cmawgoB0961
CmaCh05G001990	Cucurbita maxima (Rimu)	cmacmaB067
CmaCh05G001990	Cucurbita maxima (Rimu)	cmacmaB426
CmaCh05G001990	Cucurbita maxima (Rimu)	cmacmaB517
CmaCh05G001990	Cucurbita maxima (Rimu)	cmacmaB551
CmaCh05G001990	Cucumber (Gy14) v1	cgycmaB0234
CmaCh05G001990	Cucumber (Gy14) v1	cgycmaB0642
CmaCh05G001990	Cucurbita moschata (Rifu)	cmacmoB755
CmaCh05G001990	Cucurbita moschata (Rifu)	cmacmoB779
CmaCh05G001990	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G001990	Wild cucumber (PI 183967)	cmacpiB810
CmaCh05G001990	Wild cucumber (PI 183967)	cmacpiB820
CmaCh05G001990	Cucumber (Chinese Long) v2	cmacuB801
CmaCh05G001990	Cucumber (Chinese Long) v2	cmacuB809
CmaCh05G001990	Melon (DHL92) v3.5.1	cmameB741
CmaCh05G001990	Melon (DHL92) v3.5.1	cmameB745
CmaCh05G001990	Watermelon (Charleston Gray)	cmawcgB702
CmaCh05G001990	Watermelon (97103) v1	cmawmB758
CmaCh05G001990	Watermelon (97103) v1	cmawmB763
CmaCh05G001990	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G001990	Cucurbita pepo (Zucchini)	cmacpeB777
CmaCh05G001990	Cucurbita pepo (Zucchini)	cmacpeB780
CmaCh05G001990	Cucurbita pepo (Zucchini)	cmacpeB787
CmaCh05G001990	Bottle gourd (USVL1VR-Ls)	cmalsiB717
CmaCh05G001990	Bottle gourd (USVL1VR-Ls)	cmalsiB724
CmaCh05G001990	Cucumber (Gy14) v2	cgybcmaB250
CmaCh05G001990	Cucumber (Gy14) v2	cgybcmaB558
CmaCh05G001990	Cucumber (Gy14) v2	cgybcmaB848
CmaCh05G001990	Melon (DHL92) v3.6.1	cmamedB836
CmaCh05G001990	Melon (DHL92) v3.6.1	cmamedB840
CmaCh05G001990	Silver-seed gourd	carcmaB0137
CmaCh05G001990	Silver-seed gourd	carcmaB1071
CmaCh05G001990	Cucumber (Chinese Long) v3	cmacucB0945
CmaCh05G001990	Cucumber (Chinese Long) v3	cmacucB0954