Carg11838 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11838
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	succinate dehydrogenase subunit 5, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_036 : 385029 .. 386584 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGGTATTCCTCCTAATTAGGAATACTTACAGCTATTTATTATAGATTCAAATCTCTCCTAATTAATTTTGGAAAGAAGCGGAATTTCTGATGAAGTCATTCGCTATTCTTTATTCAACTTAATTAATGCTAGCTATTGATTTTCTCAGTTGGTTGCTGATATGCTTGTGTCTTACTGGTGATTAGTTAAATATATAGTTCTTCTACCATGAATTGCACATACAGATGTAGTTCTTACAAATCAAAATTTTGCTTGCTATATTTGTACAGTAAACTGCTATGTTCTTTTCTGCATTAGTATTTATCATCAAGTCTTCATAGTGTTCGCGATTTGTGGTTAGTTTTGTTGAAATGCCGAGTTTCTTTAAGTGCCCCTTATTGTTACTTTAAGCAATGCTTTGTCTTAAAGAATTGTAACAAAATAAATCTCGTATCAGAGAGAAGGAATATCAACTAAAGTTTTAAAACTTCAACATATTCTGTGTAGAAATGTGCACTGTGCAAAGTTTTATTGTTTTAGCTCCCTGCAATGTGAAGTGACTGAATAACGTTGATAGACTGAATTAAATTATTTTTTCAGTATTATAATGTTTGAAAATAAATCGTATGCCTGTTTCTTCTGGTAAATTTCAGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGTATTGGAAATTATATATTTATCAAATTAATTTTTTTTTCCTCTCCAGTTTCTTATCAAGTGAAAACTTCCGAGTCTATCTACAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTAAAAAGCTTCTCGCTATATAGTTTGTTAATTGCTATTTTCAAATAAATAAGTTGGTGAAACGAGTATTGACCATTAAGCAATTTTTGTTAACCATAGCTTCTATCTTATTTTACGACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

mRNA sequence

ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Coding sequence (CDS)

ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Protein sequence

MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA

Homology

[Close]

BLAST of Carg11838 vs. NCBI nr
Match: XP_022962336.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 459.9 bits (1182), Expect = 5.2e-126
Identity = 237/239 (99.16%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDF PRVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]

BLAST of Carg11838 vs. NCBI nr
Match: XP_023546792.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.6 bits (1163), Expect = 8.3e-124
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSH QAARSFFSLSSHRSSFSDF  RVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]

BLAST of Carg11838 vs. NCBI nr
Match: XP_022996467.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima] >XP_022996468.1 succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 448.7 bits (1153), Expect = 1.2e-122
Identity = 231/239 (96.65%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLL+SHH AARSFFSL SHRSSFSDF  RVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 239

[Close]

BLAST of Carg11838 vs. NCBI nr
Match: XP_023546793.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.4 bits (1147), Expect = 6.0e-122
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSH QAARSFFSLSSHRSSFSDF  RVSS DCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSS-DCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 238

[Close]

BLAST of Carg11838 vs. NCBI nr
Match: XP_004152731.1 (PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus] >KGN62537.1 hypothetical protein Csa_2G360050 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 1.6e-106
Identity = 204/238 (85.71%), Postives = 219/238 (92.02%), Query Frame = 0


Query: 2   VILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGY 61
           VIL+SLLRSVRARSY IAGVTHRNLLQS+HQ ARSFF LSSHR SFSD   RVSS DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSS-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAAEAAE+FGD+L+NLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY A
Sbjct: 125 GKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Carg11838 vs. TAIR10
Match: AT1G47420.1 (succinate dehydrogenase 5)

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-63
Identity = 119/176 (67.61%), Postives = 143/176 (81.25%), Query Frame = 0


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of Carg11838 vs. Swiss-Prot
Match: sp|Q9SX77|SDH5_ARATH (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.8e-62
Identity = 119/176 (67.61%), Postives = 143/176 (81.25%), Query Frame = 0


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of Carg11838 vs. Swiss-Prot
Match: sp|Q0JDA2|SDH5_ORYSJ (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-56
Identity = 104/171 (60.82%), Postives = 138/171 (80.70%), Query Frame = 0


Query: 69  RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVEN 128
           R FS +  ++P I D ++++AFKDLMAASW  LP+S+V + K A S +T+DKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 129 VFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGP 188
           VFRAAEA E+FG +LV L+M +DD  G++GE+V PL   ++ A+++ Y RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 189 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]

BLAST of Carg11838 vs. TrEMBL
Match: tr|A0A0A0LP60|A0A0A0LP60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.0e-106
Identity = 204/238 (85.71%), Postives = 219/238 (92.02%), Query Frame = 0


Query: 2   VILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGY 61
           VIL+SLLRSVRARSY IAGVTHRNLLQS+HQ ARSFF LSSHR SFSD   RVSS DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSS-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAAEAAE+FGD+L+NLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY A
Sbjct: 125 GKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Carg11838 vs. TrEMBL
Match: tr|A0A1S3BAR6|A0A1S3BAR6_CUCME (succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487909 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.0e-102
Identity = 199/238 (83.61%), Postives = 212/238 (89.08%), Query Frame = 0


Query: 2   VILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGY 61
           VIL+SLLRSVRARSY IAGVTHRNLLQS+HQ ARS F LSSHRSSFSD   RV S DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSVFYLSSHRSSFSDSPQRV-SYDCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MP I D KL   FKDLMAASWD LPE V+Y+ K ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPAIQDPKLNIVFKDLMAASWDKLPEPVIYEAKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAA AAE+FGDIL+NLKMEIDDSIG+SGE+VKPLSDELKKAL TV+DRY A
Sbjct: 125 GKEIVENVFRAAVAAEEFGDILINLKMEIDDSIGLSGENVKPLSDELKKALHTVHDRYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Carg11838 vs. TrEMBL
Match: tr|A0A2I4E9M8|A0A2I4E9M8_9ROSI (succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108987625 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 5.4e-79
Identity = 161/238 (67.65%), Postives = 189/238 (79.41%), Query Frame = 0


Query: 2   VILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGY 61
           ++L+SL RS+ +RSY +A V+H + L+  HQ +RS F+LSS   S S  +P +S      
Sbjct: 5   LVLRSLYRSLCSRSYHVAAVSH-SFLRHQHQTSRSLFNLSSPSLSGSPNRP-LSGCLSSL 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
             G+   RF+S DV +MP + D KL NAFKDLMA SWD LP  V++DVKAALS ST+D  
Sbjct: 65  SMGIGSKRFYSEDVSHMPVVKDPKLYNAFKDLMANSWDELPNHVIHDVKAALSKSTDDTT 124

Query: 122 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKE+V NVFRAAEA E+FGDILVNLKMEIDDSIG+SGEDVKPLSDELK AL TV+ RYT 
Sbjct: 125 GKEVVANVFRAAEAVEEFGDILVNLKMEIDDSIGMSGEDVKPLSDELKNALHTVHKRYTT 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           YLDAFGP+E YLRKKVETELGTKMI+LKMRCSGL S+WGKV+VLGTSGLSGSYVEQRA
Sbjct: 185 YLDAFGPDETYLRKKVETELGTKMIHLKMRCSGLDSDWGKVTVLGTSGLSGSYVEQRA 240

[Close]

BLAST of Carg11838 vs. TrEMBL
Match: tr|A0A2I4ESR1|A0A2I4ESR1_9ROSI (succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108992347 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 167/244 (68.44%), Postives = 189/244 (77.46%), Query Frame = 0


Query: 4   LKSLLRSVRARSYVIAGVTHRNLLQSH----HQAARSFFSLSSHRSSFSDFQPRVSSADC 63
           L+SL RS+ +RSY +  VTH  LL+ H    H A RS FSL+S   S S   P       
Sbjct: 7   LRSLYRSLCSRSYRLTSVTHTLLLRRHHLNTHVATRSLFSLASPSPSGSLNLPL-----S 66

Query: 64  GYLSGVAHA----RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSG 123
           G LS V+ A    RF+S  V +MP I D +L   FKDL+AASWD LP SVV+DVKAALS 
Sbjct: 67  GCLSSVSIAIRSKRFYSEGVTHMPVIKDPELHGVFKDLLAASWDELPNSVVHDVKAALSK 126

Query: 124 STEDKAGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTV 183
           ST+D AGKE+VENVFRAAEAAE+FG ILV LKMEIDDSIG+SGEDVKPLSDELK ALQTV
Sbjct: 127 STDDTAGKEVVENVFRAAEAAEEFGGILVTLKMEIDDSIGMSGEDVKPLSDELKNALQTV 186

Query: 184 YDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYV 240
           Y+RYT+YLDAFGP+E YLRKKVETELGTKMI+LKMRCSGL SEWGK++VLGTSGLSGSYV
Sbjct: 187 YNRYTSYLDAFGPDETYLRKKVETELGTKMIHLKMRCSGLDSEWGKITVLGTSGLSGSYV 245

[Close]

BLAST of Carg11838 vs. TrEMBL
Match: tr|A0A2N9I4V7|A0A2N9I4V7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20282 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.4e-73
Identity = 156/240 (65.00%), Postives = 189/240 (78.75%), Query Frame = 0


Query: 2   VILKSLLRSVRARSYVIAGVTHR-NLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 61
           +I++SL RS+ +RSY  A V+H          A+R+ F+LSS   S S F  R+ S    
Sbjct: 5   LIMRSLYRSLCSRSYQAAAVSHSLXXXXXXXLASRTLFNLSS--PSPSSFPNRLLSDCMS 64

Query: 62  YLS-GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTED 121
            LS G+   R +S DV ++P I D  LQ AFKDLMAASWDNL +++++DVKAALS +T+D
Sbjct: 65  PLSMGIGSKRLYSEDVTHLPAIRDPDLQIAFKDLMAASWDNLEDTLIHDVKAALSKTTDD 124

Query: 122 KAGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRY 181
             GKEIVENVFRAAEA+E+F  ILV+LKMEIDDSIG+SGEDVKP+SDEL  AL+TVY+RY
Sbjct: 125 TTGKEIVENVFRAAEASEEFCGILVSLKMEIDDSIGLSGEDVKPMSDELTNALRTVYNRY 184

Query: 182 TAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           TAYLDAFGP+E YLRKKVETELGTKMI+LK+RCSGLGSEWGK++VLGTSGLSGSYVE RA
Sbjct: 185 TAYLDAFGPDETYLRKKVETELGTKMIHLKLRCSGLGSEWGKITVLGTSGLSGSYVEHRA 242

The following BLAST results are available for this feature:

BLAST of Carg11838 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962336.1	5.2e-126	99.16	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata]	[more]
XP_023546792.1	8.3e-124	97.91	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Cucurbita pepo...	[more]
XP_022996467.1	1.2e-122	96.65	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima] >XP_022...	[more]
XP_023546793.1	6.0e-122	97.49	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo...	[more]
XP_004152731.1	1.6e-106	85.71	PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus] >K...	[more]

BLAST of Carg11838 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47420.1	1.5e-63	67.61	succinate dehydrogenase 5	[more]

BLAST of Carg11838 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SX77\|SDH5_ARATH	2.8e-62	67.61	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q0JDA2\|SDH5_ORYSJ	2.3e-56	60.82	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Carg11838 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LP60\|A0A0A0LP60_CUCSA	1.0e-106	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1	[more]
tr\|A0A1S3BAR6\|A0A1S3BAR6_CUCME	2.0e-102	83.61	succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2I4E9M8\|A0A2I4E9M8_9ROSI	5.4e-79	67.65	succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2I4ESR1\|A0A2I4ESR1_9ROSI	1.3e-77	68.44	succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2N9I4V7\|A0A2N9I4V7_FAGSY	4.4e-73	65.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20282 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025397	DUF4370

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11838-RA	Carg11838-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Protein of unknown function DUF4370	PFAM	PF14290	DUF4370	coord: 1..239 e-value: 1.4E-104 score: 349.0
IPR025397	Protein of unknown function DUF4370	PANTHER	PTHR36139	FAMILY NOT NAMED	coord: 4..239

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11838	Cla022551	Watermelon (97103) v1	carwmB0172
Carg11838	Csa2G360050	Cucumber (Chinese Long) v2	carcuB0202
Carg11838	MELO3C010886	Melon (DHL92) v3.5.1	carmeB0186
Carg11838	ClCG08G015700	Watermelon (Charleston Gray)	carwcgB0178
Carg11838	CSPI02G19390	Wild cucumber (PI 183967)	carcpiB0209
Carg11838	Cucsa.232700	Cucumber (Gy14) v1	carcgyB0222
Carg11838	CmaCh12G005220	Cucurbita maxima (Rimu)	carcmaB0249
Carg11838	CmaCh05G001990	Cucurbita maxima (Rimu)	carcmaB0256
Carg11838	CmoCh12G004630	Cucurbita moschata (Rifu)	carcmoB0257
Carg11838	Lsi08G014510	Bottle gourd (USVL1VR-Ls)	carlsiB164
Carg11838	Cp4.1LG07g04480	Cucurbita pepo (Zucchini)	carcpeB0268
Carg11838	MELO3C010886.2	Melon (DHL92) v3.6.1	carmedB0190
Carg11838	CsaV3_2G028080	Cucumber (Chinese Long) v3	carcucB0209
Carg11838	Cla97C08G159280	Watermelon (97103) v2	carwmbB0190
Carg11838	Bhi04G000294	Wax gourd	carwgoB0231

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11838	Carg25834	Silver-seed gourd	carcarB215

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11838	Silver-seed gourd	carcarB119
Carg11838	Silver-seed gourd	carcarB218
Carg11838	Silver-seed gourd	carcarB224
Carg11838	Silver-seed gourd	carcarB225
Carg11838	Cucumber (Gy14) v2	carcgybB0195
Carg11838	Cucumber (Gy14) v2	carcgybB0197
Carg11838	Cucumber (Gy14) v2	carcgybB0198
Carg11838	Cucumber (Gy14) v1	carcgyB0219
Carg11838	Cucurbita maxima (Rimu)	carcmaB0254
Carg11838	Cucurbita maxima (Rimu)	carcmaB0247
Carg11838	Cucurbita maxima (Rimu)	carcmaB0251
Carg11838	Cucurbita maxima (Rimu)	carcmaB0257
Carg11838	Cucurbita moschata (Rifu)	carcmoB0255
Carg11838	Cucurbita moschata (Rifu)	carcmoB0259
Carg11838	Cucurbita moschata (Rifu)	carcmoB0262
Carg11838	Cucurbita moschata (Rifu)	carcmoB0263
Carg11838	Cucurbita moschata (Rifu)	carcmoB0264
Carg11838	Cucurbita pepo (Zucchini)	carcpeB0261
Carg11838	Cucurbita pepo (Zucchini)	carcpeB0263
Carg11838	Cucurbita pepo (Zucchini)	carcpeB0264
Carg11838	Cucurbita pepo (Zucchini)	carcpeB0265
Carg11838	Cucurbita pepo (Zucchini)	carcpeB0267
Carg11838	Wild cucumber (PI 183967)	carcpiB0211
Carg11838	Wild cucumber (PI 183967)	carcpiB0212
Carg11838	Cucumber (Chinese Long) v2	carcuB0204
Carg11838	Cucumber (Chinese Long) v2	carcuB0205
Carg11838	Cucumber (Chinese Long) v3	carcucB0211
Carg11838	Cucumber (Chinese Long) v3	carcucB0212
Carg11838	Bottle gourd (USVL1VR-Ls)	carlsiB161
Carg11838	Bottle gourd (USVL1VR-Ls)	carlsiB162
Carg11838	Melon (DHL92) v3.5.1	carmeB0187
Carg11838	Melon (DHL92) v3.5.1	carmeB0188
Carg11838	Melon (DHL92) v3.6.1	carmedB0191
Carg11838	Melon (DHL92) v3.6.1	carmedB0192
Carg11838	Watermelon (Charleston Gray)	carwcgB0173
Carg11838	Watermelon (Charleston Gray)	carwcgB0175
Carg11838	Watermelon (97103) v1	carwmB0173
Carg11838	Watermelon (97103) v1	carwmB0176
Carg11838	Watermelon (97103) v2	carwmbB0185
Carg11838	Watermelon (97103) v2	carwmbB0187
Carg11838	Wax gourd	carwgoB0235
Carg11838	Wax gourd	carwgoB0236