Carg25834 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25834
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	succinate dehydrogenase subunit 5, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_356 : 70333 .. 72474 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCACCCTCCACCCTCCGAAGTTGGCTTTCAATTTTGCAGTCCGAGGAAAAAGCGAAAGCGATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGGTACTCCTATTAATTTGTTGTATTCGTAATTTTGTTTTATAGATTCAAATGTCTCCGGATTGATTTTGCACGGAAGTGTGGGGTTTCTGACGAAGTTATGCACTGTTCTTTATTTAACTTATTTAATGATTGTTGATGTACTTGTGGATGCTTCTTCCTTCATCGAGTGTACATGCAGATGTATTTCTTTCAATTCAAAGTTTTGTTTGCTGTATTTGTACAGTAAATAGCTATATTCTTTGCTGTATTAATATTTATCATGAAGTCGACTGTGCGAGAAGCCTTCACAGTCTGCAATTTGTAGATAATTTTGTTGTGAAATATAAAATTTAAGCAATGCCTTTGTAAGAATTGCAAGAAAATCAATCTCGTATAGGAGAGCAAGGAATATCAAATGAAGTTTTAGAAGTCATTTACCTTTCCAAAACTGAATATCATTCCTGATACAAACATATAGTTTGATTAATTCGTAAAAGATAAGATCCATGGGAGAAGGTAAAAATTTCAACATGTTCTGTGCAGCAATTATGCGTTGTACAAATTTTATTGCCCCAACCTGCCACGATGATCTAGAGTGACTGAACAATCTACATAGACACTTCAATTCTTTTTTCAGTATTATAATGTTTGATAAGATATCATATTCATGTTTCATCTGGTAAATTTCTGCAGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGTTTTCCGAGCAGCTGAAGCAGCCGAGGAGTTTGGTGGTATACTTACCAGCTTGAAAATGAAAATTGATGATAGCATTGGTCTTAGCGGCGAGGTATTGGAAACTATAGAATTATCAAATTAAAACCCCATTTGAAACCATTTAGTTCTTGAAAAAATCAAACTTATAGACACTACTTCCACCTATGAGTGTTTTTTTTTTTTTTTTGTTATCTATTTTGTAAAAATCTTAGTTTTGAATACTTAAAAAAGTAGTTTTTAAAAAGTATTTGGAATTTGTCTCTAAATTAAATTGTTTATTTTAAAATTGTGAAAACTATAAGAAAGAATTTGGGAGGAAACAAACATAAATTTAAAAAACAGAAACTAAAGACAAAATGGTTATTGAATGAGGCCTAAGTTACTTTCTTCTGCCATTTTTTATCGAGTAAAAACTTCTGAGTCCATCTGCAGGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTACGCAAATTCCGATATGTAATCTGGCAAAGAGCATAAATTTCATTGCATAGTTGCTTCGGAAACAGTCCACACATTTGTTCTAATAAATGAAATTGATCATTTGGTTTCGTTTACCATGTTTTCTTTTTTGTTTTATGACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAAATTTGGCTGTAATTGCAAGCTTCCGTTAGTTTGAGTGTATGTTCTTCAATGTTTTATTGTGCATCTTCTCTCAAAACCAATTAACCGTGGAGTTAATGGCAATTGAATAAGATCTCACCTTGAGGAATGAGTAAACAGAATTTAACATCCTCATTTGTTTACCAATTATTCGGTTTCT

mRNA sequence

CCATCACCCTCCACCCTCCGAAGTTGGCTTTCAATTTTGCAGTCCGAGGAAAAAGCGAAAGCGATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAAATTTGGCTGTAATTGCAAGCTTCCGTTAGTTTGAGTGTATGTTCTTCAATGTTTTATTGTGCATCTTCTCTCAAAACCAATTAACCGTGGAGTTAATGGCAATTGAATAAGATCTCACCTTGAGGAATGAGTAAACAGAATTTAACATCCTCATTTGTTTACCAATTATTCGGTTTCT

Coding sequence (CDS)

ATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAA

Protein sequence

MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYDCGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA

Homology

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BLAST of Carg25834 vs. NCBI nr
Match: XP_022951155.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 397.5 bits (1020), Expect = 2.8e-107
Identity = 209/241 (86.72%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQS+YQAARNFSYISSPRSSFSDSPLRVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSYYQAARNFSYISSPRSSFSDSPLRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLSNELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEAAEEFGGILTSLKMKIDDSIGLSGEDVKPLSNELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

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BLAST of Carg25834 vs. NCBI nr
Match: XP_023001943.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 202/241 (83.82%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFS++SSPRSSFSDSP RVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDV HMPTIEDSKLQNAFKDLMAASWDNLPE VVYDVK ALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLS+ELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT+YLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

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BLAST of Carg25834 vs. NCBI nr
Match: XP_023537918.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 1.9e-103
Identity = 202/241 (83.82%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFS +SSPRSSFSDSP RVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSNLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSG GHARFFSVDV HMPTIEDSKL+NAFKDLMAASWD+LPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGAGHARFFSVDVAHMPTIEDSKLRNAFKDLMAASWDDLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLS+ELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEAAEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

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BLAST of Carg25834 vs. NCBI nr
Match: XP_023546793.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.8 bits (865), Expect = 2.6e-89
Identity = 182/238 (76.47%), Postives = 193/238 (81.09%), Query Frame = 0


Query: 4   MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYDCGY 63
           MV+LRSLLRSVRA SY IAGV HR+LLQSH QAAR+F  +SS RSSFSD PLRVS DCGY
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGY 60

Query: 64  LSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEA 123
           LSGV HARFFSVDVV+MPTI D+KLQNAFKDLMAASWDNLPE VVYDVKAALSGST D+A
Sbjct: 61  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 120

Query: 124 GKEIVEN-------------------------------DVKPLSNELKNALQTVHDRYTA 183
           GKEIVEN                               DVKPLS+ELK ALQTV+DRYTA
Sbjct: 121 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 180

Query: 184 YLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 238

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BLAST of Carg25834 vs. NCBI nr
Match: XP_022144354.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 176/241 (73.03%), Postives = 191/241 (79.25%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKM++LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+  ++SS RSS SDS  RVS D
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGY SGVG  RFFSVDVVHMPTIEDSKLQN FKDLMA SWD LP  +VYDVKAALSGST+
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           D+AGKE+VEN                               DVKPLS+ELKNAL TVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

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BLAST of Carg25834 vs. TAIR10
Match: AT1G47420.1 (succinate dehydrogenase 5)

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-48
Identity = 115/222 (51.80%), Postives = 135/222 (60.81%), Query Frame = 0


Query: 25  RHRSLLQSHYQAARNFSYISS---PRSSFSDSPLRVSYDCGY--LSGVGHARFFSVDVVH 84
           RHR+L+      A N S I      + SF  S   VS D  Y    G+G  R FS DV H
Sbjct: 41  RHRTLI----TVAPNASVIGDVQINKGSFI-SYASVSRDLQYPRAMGMGQVRRFSEDVSH 100

Query: 85  MPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN--------- 144
           MP +EDS + NAFKDLMAA W  LP  VV D K A+S +T+D+AG+E ++N         
Sbjct: 101 MPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVE 160

Query: 145 ----------------------DVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKV 204
                                  VKPL N++ +AL+T + RY  YLD+F PEE YLKKKV
Sbjct: 161 EFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKV 220

Query: 205 ETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           E ELGTKMIHLKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 221 EMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

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BLAST of Carg25834 vs. Swiss-Prot
Match: sp|Q9SX77|SDH5_ARATH (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.4e-47
Identity = 115/222 (51.80%), Postives = 135/222 (60.81%), Query Frame = 0


Query: 25  RHRSLLQSHYQAARNFSYISS---PRSSFSDSPLRVSYDCGY--LSGVGHARFFSVDVVH 84
           RHR+L+      A N S I      + SF  S   VS D  Y    G+G  R FS DV H
Sbjct: 41  RHRTLI----TVAPNASVIGDVQINKGSFI-SYASVSRDLQYPRAMGMGQVRRFSEDVSH 100

Query: 85  MPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN--------- 144
           MP +EDS + NAFKDLMAA W  LP  VV D K A+S +T+D+AG+E ++N         
Sbjct: 101 MPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVE 160

Query: 145 ----------------------DVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKV 204
                                  VKPL N++ +AL+T + RY  YLD+F PEE YLKKKV
Sbjct: 161 EFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKV 220

Query: 205 ETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           E ELGTKMIHLKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 221 EMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

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BLAST of Carg25834 vs. Swiss-Prot
Match: sp|Q0JDA2|SDH5_ORYSJ (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-39
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 71  RFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN 130
           R FS +  H+P I D ++++AFKDLMAASW  LP+ +V + K A S +T+D+AGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 131 -------------------------------DVKPLSNELKNALQTVHDRYTAYLDAFGP 190
                                          +V PL   +++A+++ + RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 191 EENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           EENYL+KKVE ELGTKMIHLKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

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BLAST of Carg25834 vs. TrEMBL
Match: tr|A0A0A0LP60|A0A0A0LP60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 172/241 (71.37%), Postives = 188/241 (78.01%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEK V+LRSLLRSVRA SY IAGV HR+LLQS++Q AR+F Y+SS R SFSDSP RVS D
Sbjct: 1   MEKTVILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSSD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           C Y SGVGHAR+FS DVV MPTIED KLQN FKDLMAASWD LPE V+YDVK ALSGST+
Sbjct: 61  CSYPSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTD 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           D+AGKEIVEN                               +VKPLS+ELK AL TVH+R
Sbjct: 121 DKAGKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHER 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           Y AYLD+FGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YIAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]

BLAST of Carg25834 vs. TrEMBL
Match: tr|A0A1S3BAR6|A0A1S3BAR6_CUCME (succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487909 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.9e-84
Identity = 169/241 (70.12%), Postives = 186/241 (77.18%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEK V+LRSLLRSVRA SY IAGV HR+LLQS++Q AR+  Y+SS RSSFSDSP RVSYD
Sbjct: 1   MEKTVILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSVFYLSSHRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           C Y SGVGHAR+FS DVV MP I+D KL   FKDLMAASWD LPEPV+Y+ K ALSGST+
Sbjct: 61  CSYPSGVGHARYFSADVVSMPAIQDPKLNIVFKDLMAASWDKLPEPVIYEAKTALSGSTD 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           D+AGKEIVEN                               +VKPLS+ELK AL TVHDR
Sbjct: 121 DKAGKEIVENVFRAAVAAEEFGDILINLKMEIDDSIGLSGENVKPLSDELKKALHTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           Y AYLD+FGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YIAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]

BLAST of Carg25834 vs. TrEMBL
Match: tr|A0A2I4E9M8|A0A2I4E9M8_9ROSI (succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108987625 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.3e-62
Identity = 140/243 (57.61%), Postives = 162/243 (66.67%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEK +VLRSL RS+ + SY +A V H S L+  +Q +R+   +SSP  S S SP R    
Sbjct: 1   MEKTLVLRSLYRSLCSRSYHVAAVSH-SFLRHQHQTSRSLFNLSSP--SLSGSPNRPLSG 60

Query: 61  C--GYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGS 120
           C      G+G  RF+S DV HMP ++D KL NAFKDLMA SWD LP  V++DVKAALS S
Sbjct: 61  CLSSLSMGIGSKRFYSEDVSHMPVVKDPKLYNAFKDLMANSWDELPNHVIHDVKAALSKS 120

Query: 121 TNDEAGKEIVEN-------------------------------DVKPLSNELKNALQTVH 180
           T+D  GKE+V N                               DVKPLS+ELKNAL TVH
Sbjct: 121 TDDTTGKEVVANVFRAAEAVEEFGDILVNLKMEIDDSIGMSGEDVKPLSDELKNALHTVH 180

Query: 181 DRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVE 211
            RYT YLDAFGP+E YL+KKVETELGTKMIHLKMRCSGL S+WGKV+VLGTSGLSGSYVE
Sbjct: 181 KRYTTYLDAFGPDETYLRKKVETELGTKMIHLKMRCSGLDSDWGKVTVLGTSGLSGSYVE 240

[Close]

BLAST of Carg25834 vs. TrEMBL
Match: tr|A0A2I4ESR1|A0A2I4ESR1_9ROSI (succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108992347 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 137/250 (54.80%), Postives = 163/250 (65.20%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSH----YQAARNFSYISSPRSSFS-DSPL 60
           M+K + LRSL RS+ + SY +  V H  LL+ H    + A R+   ++SP  S S + PL
Sbjct: 1   MDKALALRSLYRSLCSRSYRLTSVTHTLLLRRHHLNTHVATRSLFSLASPSPSGSLNLPL 60

Query: 61  RVSYDCGYLSGVGHA----RFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDV 120
                 G LS V  A    RF+S  V HMP I+D +L   FKDL+AASWD LP  VV+DV
Sbjct: 61  -----SGCLSSVSIAIRSKRFYSEGVTHMPVIKDPELHGVFKDLLAASWDELPNSVVHDV 120

Query: 121 KAALSGSTNDEAGKEIVEN-------------------------------DVKPLSNELK 180
           KAALS ST+D AGKE+VEN                               DVKPLS+ELK
Sbjct: 121 KAALSKSTDDTAGKEVVENVFRAAEAAEEFGGILVTLKMEIDDSIGMSGEDVKPLSDELK 180

Query: 181 NALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSG 211
           NALQTV++RYT+YLDAFGP+E YL+KKVETELGTKMIHLKMRCSGL SEWGK++VLGTSG
Sbjct: 181 NALQTVYNRYTSYLDAFGPDETYLRKKVETELGTKMIHLKMRCSGLDSEWGKITVLGTSG 240

[Close]

BLAST of Carg25834 vs. TrEMBL
Match: tr|A0A2N9I4V7|A0A2N9I4V7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20282 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 131/244 (53.69%), Postives = 159/244 (65.16%), Query Frame = 0


Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHR-SLLQSHYQAARNFSYISSPRSSFSDSPLRVSY 60
           M+K +++RSL RS+ + SY  A V H          A+R    +SSP  S S  P R+  
Sbjct: 1   MDKKLIMRSLYRSLCSRSYQAAAVSHSLXXXXXXXLASRTLFNLSSP--SPSSFPNRLLS 60

Query: 61  DC--GYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSG 120
           DC      G+G  R +S DV H+P I D  LQ AFKDLMAASWDNL + +++DVKAALS 
Sbjct: 61  DCMSPLSMGIGSKRLYSEDVTHLPAIRDPDLQIAFKDLMAASWDNLEDTLIHDVKAALSK 120

Query: 121 STNDEAGKEIVEN-------------------------------DVKPLSNELKNALQTV 180
           +T+D  GKEIVEN                               DVKP+S+EL NAL+TV
Sbjct: 121 TTDDTTGKEIVENVFRAAEASEEFCGILVSLKMEIDDSIGLSGEDVKPMSDELTNALRTV 180

Query: 181 HDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYV 211
           ++RYTAYLDAFGP+E YL+KKVETELGTKMIHLK+RCSGLGSEWGK++VLGTSGLSGSYV
Sbjct: 181 YNRYTAYLDAFGPDETYLRKKVETELGTKMIHLKLRCSGLGSEWGKITVLGTSGLSGSYV 240

The following BLAST results are available for this feature:

BLAST of Carg25834 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951155.1	2.8e-107	86.72	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata]	[more]
XP_023001943.1	1.1e-103	83.82	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima]	[more]
XP_023537918.1	1.9e-103	83.82	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]
XP_023546793.1	2.6e-89	76.47	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo...	[more]
XP_022144354.1	1.0e-88	73.03	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica char...	[more]

BLAST of Carg25834 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47420.1	4.7e-48	51.80	succinate dehydrogenase 5	[more]

BLAST of Carg25834 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SX77\|SDH5_ARATH	8.4e-47	51.80	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q0JDA2\|SDH5_ORYSJ	1.7e-39	48.54	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Carg25834 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LP60\|A0A0A0LP60_CUCSA	1.5e-85	71.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1	[more]
tr\|A0A1S3BAR6\|A0A1S3BAR6_CUCME	2.9e-84	70.12	succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2I4E9M8\|A0A2I4E9M8_9ROSI	5.3e-62	57.61	succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2I4ESR1\|A0A2I4ESR1_9ROSI	2.3e-57	54.80	succinate dehydrogenase subunit 5, mitochondrial-like OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2N9I4V7\|A0A2N9I4V7_FAGSY	1.1e-56	53.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20282 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025397	DUF4370

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25834-RA	Carg25834-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Protein of unknown function DUF4370	PFAM	PF14290	DUF4370	coord: 1..130 e-value: 2.0E-31 score: 109.6 coord: 130..210 e-value: 1.8E-47 score: 162.1
IPR025397	Protein of unknown function DUF4370	PANTHER	PTHR36139	FAMILY NOT NAMED	coord: 7..130 coord: 130..210

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25834	Cla022551	Watermelon (97103) v1	carwmB0263
Carg25834	Csa2G360050	Cucumber (Chinese Long) v2	carcuB0299
Carg25834	MELO3C010886	Melon (DHL92) v3.5.1	carmeB0274
Carg25834	ClCG08G015700	Watermelon (Charleston Gray)	carwcgB0264
Carg25834	CSPI02G19390	Wild cucumber (PI 183967)	carcpiB0303
Carg25834	Cucsa.232700	Cucumber (Gy14) v1	carcgyB0322
Carg25834	CmaCh05G001990	Cucurbita maxima (Rimu)	carcmaB0378
Carg25834	CmaCh12G005220	Cucurbita maxima (Rimu)	carcmaB0377
Carg25834	CmoCh05G001960	Cucurbita moschata (Rifu)	carcmoB0375
Carg25834	CmoCh12G004630	Cucurbita moschata (Rifu)	carcmoB0374
Carg25834	Lsi08G014510	Bottle gourd (USVL1VR-Ls)	carlsiB245
Carg25834	Cp4.1LG11g01760	Cucurbita pepo (Zucchini)	carcpeB0382
Carg25834	Cp4.1LG07g04480	Cucurbita pepo (Zucchini)	carcpeB0383
Carg25834	CsGy2G019240	Cucumber (Gy14) v2	carcgybB0286
Carg25834	MELO3C010886.2	Melon (DHL92) v3.6.1	carmedB0286
Carg25834	CsaV3_2G028080	Cucumber (Chinese Long) v3	carcucB0302
Carg25834	Cla97C08G159280	Watermelon (97103) v2	carwmbB0280
Carg25834	Bhi04G000294	Wax gourd	carwgoB0356

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25834	Carg11838	Silver-seed gourd	carcarB215

The following block(s) are covering this gene:

None