CmaCh04G005180 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGGGGTTCCTCTTCTTCTACTACTTCTTCCTCCATTTTTAATATCTGATCTGAACTGCAAACCAGTTTCGATTCGATTCGATTCGGTTCTCTTAGATTTCGGGGTTGGTAATCGGAGAACATCATGCGCCGGGAAGTGGTATTGCCGTTGTTCGTGCTCTGTTTCTTCGCCGCAGATCTTGTTCGAACTGCCCATTCAATCTGGTTGAACTTACCTGCATCTGGAACCAAGTGCGTCTCCGAGGAAATCCAGACCAACGTTGTTGTTCTTGCCGATTTTGTCGTTGTCGCTGATCATACTCATGCTCCCACCATTTCTGTCAAGGTCAAATTTCGAGATTAAACCTTTTTTCTTCTTTGATTCTTCGTTCGCCAATGTCTCTTTTATTTGTGCGTTTTTTATTTGAATTTCTCGGTTTGATAATTTGTTGGGCTGTATCAAAATTGATAGGATTATGAAATAAACCCGATGGGGTAATGCATTGCTACTTATTTGTTGATTTCTCCTCTCCCGTTTGGTTATGACCGATCAATTTCGAAATTCCTAGAACTTTGATCTATTTCTTGTGCGTCATGTCCTTTGTTTCTAATCCTGGAGATAAAATTTCATGTTGTCATTGATGAATTAACGGGACCAAAGGATTTTTCCGGCTGTGTTGGTTTGTATAAATCCAGTGCGCCAATGGAAGTGTCCTTGTTTCTCTGGCTTGTTGCTCAAGGGAACTAAAGTCTGATGTTCTCACAACGCTTTAGGCATATCTTAGCAGGGAGATTAAAGAAAGGCATCAATTCTATGATAGCCTCTTCTTTACTATTATGGAGGTTTTTTTCCATCCAATTTTAGTTTGTTTGGTTTCTGAGTTTGTCTGTGAAGATTATCTCAACAGGTTTAGAGGAACATATGAAGGAAGACCAATGCCAGGTTGTGGATTAGTCTTAAGGGGATGGTACCTTTGAAATCTGCCGCACACCCACAAATGATTTGGTTTTTGCAAATTGTTTTAAATTCTTAATGATTGTTTGGGAGGATGATTCATGGGGAAGGTGACCAAAAAGTTGAATCTCGAATTGTTTTAGTATCAAAACTTGACTAGTCTATATATTATTGACAGTGATAGATCTTCATTTAAAATTCGATTTGAGTCTCTAGGTGATATATTTTGTCCATTTCTTTAGTAGATTCCATTGAAGGGTTGTGTTTTGACCTCTGAATTTGTGATCTCCCACATTGGTTGGGGAGGAGAATAAAACACCATTTATAAGGGAGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAGGCCCGAAAGGGAAAGCTCAAAGAAGACAATATCTGCTAGCTGTGGATCTGGGACGTTACAAATGGTATAAGAGCCAGACACCGGACGATGTGTCAGCCTTCTCGCTGTTCCCCGAAGGGGGGTAGACACTAGGCGGTGTGCCAGTAAGGCGTTGTGCCCCAAAGGGGGTGGATTTGGTGGGGGTCCCACATCAAATTGGAGAAAGGAACGAATGCCAATGAGGACGCTAGGCCCCAAAGGGGGTGGATTGTGATGTCTCACATTGGTTGGGAGGAGAACAAAACACCCTTATAAGGGAGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAAGACAATATCTGCTAGCTGTGGATCTGGGACGTTACAGAATTTCTGTTGGACATTTTTGAGTGATCATCTCTCTTAAAAAATAAGCTTATCTACTCATATGATATATGTTATTTCTTGGCTTTTTTCTTACTAATTAATCTAAGACTTGAACAATTCTTATGGAAGTTTAGACTTGGCAGTGCGTCAGGCCATTTGATATGTACTACTGATAAATCCACCGTTCATGGATTGTTGTAAACAACCAGATGAACTGTACTATATGTTTTAGGATGTTTAGCTGAATCCATTGGCTGTGCCTCCTTTTAAGTAATTTATATCTGTCATTTGGTGGTGACATGGTTAGTCGATTCAATGATGTCAAACATGTTTGAATCTGTGATCTGATTATGATTCCGTAACTTTTAACGCTAGATTAATAATCACATACAGATTCGGTGCAAATCGATGTTTATTCTTTGTGTGTGGAAAAATTTTCCTTTTAAGTTTTGAAGGCCAGATTCCTTAATGTCTTGATTATATGGTATTATTTTGCACTTTACTGATTGATGACAGTCTCCTTCAGGTGACATCTCCATACGGGAACAATCTTCATCACTCGGAGAACATAACGCATGGTCAGTTTGCGTTTACGACAAGTGAGGGTGGTAATTACCTAGCCTGTTTCTGGCTGACTGACCACAAGCATGAAGCTAGTACTGAGGTAAGTGTCAACCTTGACTGGAGAACAGGGATTGCAGCCAAGGATTGGGAATCAGTCGCAAAAAAAGAGAAAATTGAGGTAACTAACTACTTCCTCCACTTTTCCATATTCCACTACAACTTGTAATATCCATTCGAATCAAACTCGTTCTTGTTTAGGGTGTTGAACTCGAGCTGAGGAAACTCGAGGGAGCTGTCGAAGCTATCCATGAAAATCTGATCTATCTCAGGGACAGGTAACCAAGTTTCCATTGTAGAACTGAATGCTTACCTAAATCTAGCCAATGTCCACAACCTTCTCCAACTCGTTACTCTGGTTTATATAATTTTGGAGTCTTGCAGAGAAGCTATTATGAGGACGGTCAGCGAGAGAACAAACTCACGAGTTGCGTGGTATAGTATCATGTCCTTGGGTGTCTGCATCATTGCTTCTACTCTACAGATATGGTACTTGAAGCGCTTCTTTCAGAAGAAAAAGCTTATTTAG CGGGGTTCCTCTTCTTCTACTACTTCTTCCTCCATTTTTAATATCTGATCTGAACTGCAAACCAGTTTCGATTCGATTCGATTCGGTTCTCTTAGATTTCGGGGTTGGTAATCGGAGAACATCATGCGCCGGGAAGTGGTATTGCCGTTGTTCGTGCTCTGTTTCTTCGCCGCAGATCTTGTTCGAACTGCCCATTCAATCTGGTTGAACTTACCTGCATCTGGAACCAAGTGCGTCTCCGAGGAAATCCAGACCAACGTTGTTGTTCTTGCCGATTTTGTCGTTGTCGCTGATCATACTCATGCTCCCACCATTTCTGTCAAGGTGACATCTCCATACGGGAACAATCTTCATCACTCGGAGAACATAACGCATGGTCAGTTTGCGTTTACGACAAGTGAGGGTGGTAATTACCTAGCCTGTTTCTGGCTGACTGACCACAAGCATGAAGCTAGTACTGAGGTAAGTGTCAACCTTGACTGGAGAACAGGGATTGCAGCCAAGGATTGGGAATCAGTCGCAAAAAAAGAGAAAATTGAGGGTGTTGAACTCGAGCTGAGGAAACTCGAGGGAGCTGTCGAAGCTATCCATGAAAATCTGATCTATCTCAGGGACAGAGAAGCTATTATGAGGACGGTCAGCGAGAGAACAAACTCACGAGTTGCGTGGTATAGTATCATGTCCTTGGGTGTCTGCATCATTGCTTCTACTCTACAGATATGGTACTTGAAGCGCTTCTTTCAGAAGAAAAAGCTTATTTAG ATGCGCCGGGAAGTGGTATTGCCGTTGTTCGTGCTCTGTTTCTTCGCCGCAGATCTTGTTCGAACTGCCCATTCAATCTGGTTGAACTTACCTGCATCTGGAACCAAGTGCGTCTCCGAGGAAATCCAGACCAACGTTGTTGTTCTTGCCGATTTTGTCGTTGTCGCTGATCATACTCATGCTCCCACCATTTCTGTCAAGGTGACATCTCCATACGGGAACAATCTTCATCACTCGGAGAACATAACGCATGGTCAGTTTGCGTTTACGACAAGTGAGGGTGGTAATTACCTAGCCTGTTTCTGGCTGACTGACCACAAGCATGAAGCTAGTACTGAGGTAAGTGTCAACCTTGACTGGAGAACAGGGATTGCAGCCAAGGATTGGGAATCAGTCGCAAAAAAAGAGAAAATTGAGGGTGTTGAACTCGAGCTGAGGAAACTCGAGGGAGCTGTCGAAGCTATCCATGAAAATCTGATCTATCTCAGGGACAGAGAAGCTATTATGAGGACGGTCAGCGAGAGAACAAACTCACGAGTTGCGTGGTATAGTATCATGTCCTTGGGTGTCTGCATCATTGCTTCTACTCTACAGATATGGTACTTGAAGCGCTTCTTTCAGAAGAAAAAGCTTATTTAG MRREVVLPLFVLCFFAADLVRTAHSIWLNLPASGTKCVSEEIQTNVVVLADFVVVADHTHAPTISVKVTSPYGNNLHHSENITHGQFAFTTSEGGNYLACFWLTDHKHEASTEVSVNLDWRTGIAAKDWESVAKKEKIEGVELELRKLEGAVEAIHENLIYLRDREAIMRTVSERTNSRVAWYSIMSLGVCIIASTLQIWYLKRFFQKKKLI
BLAST of CmaCh04G005180 vs. Swiss-Prot
Match: P24D3_ARATH (Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 1.1e-78 Identity = 146/213 (68.54%), Postives = 176/213 (82.63%), Query Frame = 1
BLAST of CmaCh04G005180 vs. Swiss-Prot
Match: P24D4_ARATH (Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=CYB PE=1 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 6.4e-71 Identity = 133/213 (62.44%), Postives = 171/213 (80.28%), Query Frame = 1
BLAST of CmaCh04G005180 vs. Swiss-Prot
Match: P24D5_ARATH (Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 1.0e-68 Identity = 134/207 (64.73%), Postives = 161/207 (77.78%), Query Frame = 1
BLAST of CmaCh04G005180 vs. Swiss-Prot
Match: P24D6_ARATH (Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 2.8e-50 Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = 1
BLAST of CmaCh04G005180 vs. Swiss-Prot
Match: P24D9_ARATH (Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.8e-42 Identity = 87/211 (41.23%), Postives = 137/211 (64.93%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TrEMBL
Match: A0A0A0L744_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214030 PE=3 SV=1) HSP 1 Score: 391.3 bits (1004), Expect = 7.2e-106 Identity = 189/212 (89.15%), Postives = 203/212 (95.75%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TrEMBL
Match: A0A061DY43_THECC (Emp24/gp25L/p24 family/GOLD family protein isoform 1 OS=Theobroma cacao GN=TCM_006390 PE=3 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 8.6e-83 Identity = 161/209 (77.03%), Postives = 178/209 (85.17%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TrEMBL
Match: B9SZK9_RICCO (Transmembrane emp24 domain-containing protein 10, putative OS=Ricinus communis GN=RCOM_0066490 PE=3 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 4.3e-82 Identity = 155/213 (72.77%), Postives = 183/213 (85.92%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TrEMBL
Match: A0A0A0KHR4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411260 PE=3 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 5.6e-82 Identity = 154/211 (72.99%), Postives = 184/211 (87.20%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TrEMBL
Match: A0A151UBU4_CAJCA (Transmembrane emp24 domain-containing protein 10 OS=Cajanus cajan GN=KK1_021054 PE=3 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 1.6e-81 Identity = 156/214 (72.90%), Postives = 184/214 (85.98%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TAIR10
Match: AT1G09580.1 (AT1G09580.1 emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 294.3 bits (752), Expect = 6.1e-80 Identity = 146/213 (68.54%), Postives = 176/213 (82.63%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TAIR10
Match: AT1G57620.1 (AT1G57620.1 emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 268.5 bits (685), Expect = 3.6e-72 Identity = 133/213 (62.44%), Postives = 171/213 (80.28%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TAIR10
Match: AT1G21900.1 (AT1G21900.1 emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 261.2 bits (666), Expect = 5.7e-70 Identity = 134/207 (64.73%), Postives = 161/207 (77.78%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TAIR10
Match: AT3G10780.1 (AT3G10780.1 emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51 Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = 1
BLAST of CmaCh04G005180 vs. TAIR10
Match: AT1G26690.1 (AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43 Identity = 87/211 (41.23%), Postives = 137/211 (64.93%), Query Frame = 1
BLAST of CmaCh04G005180 vs. NCBI nr
Match: gi|449464482|ref|XP_004149958.1| (PREDICTED: transmembrane emp24 domain-containing protein p24delta3 [Cucumis sativus]) HSP 1 Score: 391.3 bits (1004), Expect = 1.0e-105 Identity = 189/212 (89.15%), Postives = 203/212 (95.75%), Query Frame = 1
BLAST of CmaCh04G005180 vs. NCBI nr
Match: gi|659112137|ref|XP_008456081.1| (PREDICTED: transmembrane emp24 domain-containing protein p24delta3-like [Cucumis melo]) HSP 1 Score: 386.7 bits (992), Expect = 2.6e-104 Identity = 187/212 (88.21%), Postives = 203/212 (95.75%), Query Frame = 1
BLAST of CmaCh04G005180 vs. NCBI nr
Match: gi|590683032|ref|XP_007041501.1| (Emp24/gp25L/p24 family/GOLD family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 314.7 bits (805), Expect = 1.2e-82 Identity = 161/209 (77.03%), Postives = 178/209 (85.17%), Query Frame = 1
BLAST of CmaCh04G005180 vs. NCBI nr
Match: gi|255581231|ref|XP_002531428.1| (PREDICTED: transmembrane emp24 domain-containing protein p24delta3 [Ricinus communis]) HSP 1 Score: 312.4 bits (799), Expect = 6.1e-82 Identity = 155/213 (72.77%), Postives = 183/213 (85.92%), Query Frame = 1
BLAST of CmaCh04G005180 vs. NCBI nr
Match: gi|449444687|ref|XP_004140105.1| (PREDICTED: transmembrane emp24 domain-containing protein p24delta3-like [Cucumis sativus]) HSP 1 Score: 312.0 bits (798), Expect = 8.0e-82 Identity = 154/211 (72.99%), Postives = 184/211 (87.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|