CmaCh04G002640 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G002640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding protein 38
LocationCma_Chr04 : 1311674 .. 1313592 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCACGTTGATGATAGCCTTCAGCAATTTGCCTATCTGTCCGCCTCTCTGTCTCTCTCTGTCTTCTTCCATTTCTTTATTTCCAGACCACTCTGTTCTTCTTCTTCTTCCTTTCCTCCGCACTATATAATCCCTTCCTCCTCTTCCCCACCACCATTTTTGCTTTCTTCATTTCTACTGTTTGCATTTCGCCGGAATCGCGACCGGAACGACGATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTAAGTCTGGAATTCATTCATTGAATCGCAATGTGAATCGATTGGATTTCATTTTTGTTGATTTCTGTTTTTTGATTTAAAAATTAGGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGTAAACGATTCCTCTCTTCCTCTCTCTGTGCATGATGAAACTAGTCAATTCGTTACTCGACAATGGCGTTTTCGTAGTTTCTCATAGAAATTTCGGACGGTGGAGATCTGACGTTGGTTTTGTGATGCCATTGAAGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGGTACACCTTAAAGATCCTACACCTCTTTCGTATTCTAACATTACCCATCTTTATACAGTTAATTTCCTTTTTTTTATTTCCCTTTTTAAATTAACGTAAATTTATAATTTTATTTAGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACGTAAGCATTTTTATTTCATGTTAAATTATAATTTAAATTAATAAGAATTATTGGAAATATATAAAACGGCGACGTTTCATGGTGAATTACAGAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTCCCTTCTCTCTTCTCTTCGCTTCCCCCATTTTTTGTTTAAATTCTTCAAATTAAACGCTGAATTAGAGAGAGATTTGATGAAAATGGAGTTTAAATCCATAAATAAAGAGAGAAGAATGAGAGTGGTTCACGTGAAAGGGTGATTTTAGTGAAGGGTCTCCTCCCCCACTGCCAACTGGCGTCTCTGGGTCCCACGTGGCCAGCTTGATCTGCCGGTCGTGGGGTGGTCTCTTGCTGTCCCTTTCCAGATGTTAATATTCCCTGATGTTAAGGGCTCTTTTGCAAAATCAACTTTTATTCTTTCTTTTTCTGGATTTGTAAATAAAGTGTTAGTGAAATTACCAAAAACATATAATAATTTGTTTAAAACTTTAGTGTGGGTATGATTTAATGAAACTGATATTAGAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

mRNA sequence

CTCACGTTGATGATAGCCTTCAGCAATTTGCCTATCTGTCCGCCTCTCTGTCTCTCTCTGTCTTCTTCCATTTCTTTATTTCCAGACCACTCTGTTCTTCTTCTTCTTCCTTTCCTCCGCACTATATAATCCCTTCCTCCTCTTCCCCACCACCATTTTTGCTTTCTTCATTTCTACTGTTTGCATTTCGCCGGAATCGCGACCGGAACGACGATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

Coding sequence (CDS)

ATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

Protein sequence

MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN
Homology
[Close]
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-60
Identity = 143/273 (52.38%), Postives = 169/273 (61.90%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG-----YM 182
           T    GNH QWYYP+G      + Q HQAVPFYGY PS  YVA ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+ P                  G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQ 252
            P P+ + P S       S  P  G  GGE +Q
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQ 256

[Close]
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh04G002640 vs. TrEMBL
Match: A0A0A0KNL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 3.0e-120
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           S+ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSN GGPR
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGGPR 132

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TTSA +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GYMNG
Sbjct: 133 TTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNG 192

Query: 183 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSK 242
           HY Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSK
Sbjct: 193 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 252

Query: 243 PASVAPTPGKGGG 248
           P +V P PG  GG
Sbjct: 253 PTTVGPNPGTVGG 264

[Close]
BLAST of CmaCh04G002640 vs. TrEMBL
Match: M5XKH9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 8.6e-91
Identity = 187/254 (73.62%), Postives = 205/254 (80.71%), Query Frame = 1 

Query: 2   MSNNNA-GLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 61
           MSNN   G FGDTTLTKVFVGGLAWETPKEA+R+HF+K+GEILEAVIISDKLTGRSKGYG
Sbjct: 3   MSNNVINGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKLTGRSKGYG 62

Query: 62  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASAT--PPQAPQHPGSNGG 121
           FVTFK+AE+AKKACED+ P+INGRRANCNLASLGARR  RSAS T  PP  P   GSNGG
Sbjct: 63  FVTFKEAEAAKKACEDATPVINGRRANCNLASLGARR-PRSASTTTPPPPPPPQRGSNGG 122

Query: 122 GPRTTSAPSGNHVQWYY--PAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG- 181
           G R+ S    NHVQWYY  PAGT  T F HQ HQ VPFYGY  SPTY+A DISYNHK+G 
Sbjct: 123 GARSMSPAPANHVQWYYPAPAGTPATPFHHQHHQPVPFYGY--SPTYIAADISYNHKLGY 182

Query: 182 ----YMNGHYR-QIYPGQAMVGANTLMPMYPLYHY-HQSHAMGMPAHIYPPSPT---AAV 241
               YMNGHY  Q+YPGQ MVG NTLMPMYPLYHY HQSH MG+PAHI+PP+ +   AAV
Sbjct: 183 TGGAYMNGHYSPQVYPGQPMVGPNTLMPMYPLYHYHHQSHTMGLPAHIFPPTTSGHVAAV 242

[Close]
BLAST of CmaCh04G002640 vs. TrEMBL
Match: W9SAA0_9ROSA (RNA-binding protein 38 OS=Morus notabilis GN=L484_014118 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 5.6e-90
Identity = 174/249 (69.88%), Postives = 199/249 (79.92%), Query Frame = 1 

Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M  +NN G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYG
Sbjct: 1   MTMSNNIGQFGDTTLTKVFVGGLAWETPKEAMREHFVKYGEILEAVIISDKVTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFK+AE+AKKACED+APIINGRRANCNLASLGARR  R+AS T    P   GSN  GP
Sbjct: 61  FVTFKEAEAAKKACEDAAPIINGRRANCNLASLGARR-PRAASNTNTTTPPQQGSN-VGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG----- 180
           R+ S    NHVQWYYPAGT    F HQ H AVP+YGY  SPTYVATDISYNHK+      
Sbjct: 121 RSMSPAPANHVQWYYPAGTPAAPFHHQQHHAVPYYGY--SPTYVATDISYNHKLSYTGGT 180

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPS-SIMSK 240
           YM+GH+ Q+YPGQ ++GANTLMPMYP+YHYHQSH MG+PAH++P +    +    +I+SK
Sbjct: 181 YMSGHFSQVYPGQPIMGANTLMPMYPMYHYHQSHTMGLPAHMFPTTTAGPISTGPAIISK 240

Query: 241 PASVAPTPG 244
           PAS+AP PG
Sbjct: 241 PASIAPNPG 245

[Close]
BLAST of CmaCh04G002640 vs. TrEMBL
Match: A0A067LNV3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 7.3e-90
Identity = 179/257 (69.65%), Postives = 206/257 (80.16%), Query Frame = 1 

Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M  +N+ G FGDTTLTKVFVGGLAWETPKEAMR+HFEK+GEILEAVIISDK+TGRSKGYG
Sbjct: 1   MTLSNSIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKD E+AKKACED+ PIINGRRANCNLASLGARR  RSA+  PPQ     GSN  GP
Sbjct: 61  FVTFKDPEAAKKACEDATPIINGRRANCNLASLGARR-PRSATPGPPQ----QGSN-VGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKV-----G 180
           R+TS+   NHVQWYYPAG+    F HQ HQAVP+YGY  +PTYVATD+SYNHK+      
Sbjct: 121 RSTSSAPVNHVQWYYPAGSPAAPFHHQHHQAVPYYGY--TPTYVATDVSYNHKLSYTGGS 180

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPS---PTAAVPPSSIM 240
           YMNGH+ Q+YPGQ ++GAN +MPMYPLYH+HQS  MG+PAHI+PP+   P   VP  +IM
Sbjct: 181 YMNGHFSQVYPGQPIMGANAVMPMYPLYHFHQSQTMGLPAHIFPPTTAGPITTVP--TIM 240

Query: 241 SKPASVAPTPGK-GGGE 249
           SKP S+AP+PG  G GE
Sbjct: 241 SKPPSIAPSPGTVGSGE 247

[Close]
BLAST of CmaCh04G002640 vs. TrEMBL
Match: F6HNK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03610 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 9.5e-90
Identity = 174/246 (70.73%), Postives = 196/246 (79.67%), Query Frame = 1 

Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M  +N  G FGDTTLTKVFVGGLAWETPKEAMRDHFEK+GEILEAVIISDKLTGRSKGYG
Sbjct: 1   MTMSNAIGQFGDTTLTKVFVGGLAWETPKEAMRDHFEKYGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFK+ E+AKKACED+ P+INGRRANCNLASLGARR   +AS+TPP    H GSNGG  
Sbjct: 61  FVTFKEPEAAKKACEDATPMINGRRANCNLASLGARRPRSAASSTPP----HQGSNGGS- 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKV-----G 180
           R TSA   +HVQWYYPAGT    F HQ HQAVPFYGYSP+  Y+A DISYNHK+      
Sbjct: 121 RPTSAAPASHVQWYYPAGTPAPPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGS 180

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPP-SSIMSK 240
           YMNGH+ Q+YPGQAMVGAN LMPMYP YH+HQS  MG PAH++PP+    +P   +I+SK
Sbjct: 181 YMNGHFSQVYPGQAMVGANALMPMYPFYHFHQSQTMGHPAHMFPPTTVGPMPTVPAIISK 239

[Close]
BLAST of CmaCh04G002640 vs. TAIR10
Match: AT3G54770.1 (AT3G54770.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-61
Identity = 143/273 (52.38%), Postives = 169/273 (61.90%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG-----YM 182
           T    GNH QWYYP+G      + Q HQAVPFYGY PS  YVA ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+ P                  G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQ 252
            P P+ + P S       S  P  G  GGE +Q
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQ 256

[Close]
BLAST of CmaCh04G002640 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-38
Identity = 101/238 (42.44%), Postives = 129/238 (54.20%), Query Frame = 1 

Query: 11  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 70
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  KKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTS---APS 130
           + AC D+ P+I+GRRANCNLASLG +R       + P  P H    GGG R  +     S
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR-------SKPSTPNH----GGGGRINNMRVMMS 127

Query: 131 GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSP-SPTYVATDISYNHKVGYMNGHYRQIY- 190
                +  P    P +F H PH  +  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 191 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPA----HIYPPSPTAAVPPSSIMSK 235
                 G     A +  P YP    H       P     H+   +P    PP+  M +
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQ 234

[Close]
BLAST of CmaCh04G002640 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.9 bits (346), Expect = 9.5e-33
Identity = 106/253 (41.90%), Postives = 129/253 (50.99%), Query Frame = 1 

Query: 10  FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 69
           FGDTT TKVFVGGLAWET  E +R HFE++GEILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 70  AKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQ-HPGS----NGGGPRTTS 129
           A++AC D  PII+GRRANCNLASLG  R     +  P    +  P S    N  GPR   
Sbjct: 78  ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPR--G 137

Query: 130 APSGNHVQWYYPAGTYPTSFRHQPHQAVPF--YGYSPSPTYVATDISYNHKVGYMNGHYR 189
           +  GN     YP    P  + +Q     P+    Y P   Y  +   Y+    YM   Y 
Sbjct: 138 SLIGN-----YPY-QQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYS---PYMGQQYL 197

Query: 190 QIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIM---------- 243
           Q+Y     V +       P+Y Y Q        H Y      +VP S I+          
Sbjct: 198 QVYGVPGAVNS-------PVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTM 252

[Close]
BLAST of CmaCh04G002640 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 101/247 (40.89%), Postives = 125/247 (50.61%), Query Frame = 1 

Query: 10  FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 69
           FGDTT TKVFVGGLAWET  E +R HF+++G+ILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 70  AKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTSAPSGN 129
           A++AC D  PII+GRRANCNLASLG  R      A  P AP           +  +P G 
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQ-YAVIPHAPGRVRPPSPYVGSVQSPRGL 137

Query: 130 HVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTY------VATDISYNHKVG----YMNG 189
           H       G++P    HQP    P Y Y     Y         D  Y+   G    YM  
Sbjct: 138 HF------GSHP---YHQP----PTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQ 197

Query: 190 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIM----SKP 243
            Y Q+Y     V +       P Y Y Q       AH Y      + P S ++    + P
Sbjct: 198 QYLQVYGVPGAVNS-------PGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSP 243

[Close]
BLAST of CmaCh04G002640 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-32
Identity = 107/286 (37.41%), Postives = 141/286 (49.30%), Query Frame = 1 

Query: 4   NNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 63
           NNN     DT LTK+FVGGLAWET ++ MR +FE+FGEI+EAV+I+DK TGRSKGYGFVT
Sbjct: 13  NNNTT---DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 72

Query: 64  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQH-------PGSN 123
           FK+AE+A +AC++  P+I+GRRANCNLA LGA++        PP +P+H       PGS 
Sbjct: 73  FKEAEAAMRACQNMNPVIDGRRANCNLACLGAQK------PRPPTSPRHGTGRFRSPGSG 132

Query: 124 GG----GPRTTSAPSGN---HVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDIS 183
            G     P+   + S +   H Q       +P      P+    F GYS    Y      
Sbjct: 133 VGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPF-----PYSTYGFSGYSQEGMYPMN--Y 192

Query: 184 YNHKVGYMNGHYRQIYPGQAMVGANTLM----PMYPLYHYHQS-----------HAMGMP 240
           YNH +    G     Y G    G+  +     P YP Y+  QS           H  G  
Sbjct: 193 YNHHL--YGGQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFS 252

[Close]
BLAST of CmaCh04G002640 vs. NCBI nr
Match: gi|449451717|ref|XP_004143608.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus])

HSP 1 Score: 439.5 bits (1129), Expect = 4.3e-120
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           S+ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSN GGPR
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGGPR 132

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TTSA +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GYMNG
Sbjct: 133 TTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNG 192

Query: 183 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSK 242
           HY Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSK
Sbjct: 193 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 252

Query: 243 PASVAPTPGKGGG 248
           P +V P PG  GG
Sbjct: 253 PTTVGPNPGTVGG 264

[Close]
BLAST of CmaCh04G002640 vs. NCBI nr
Match: gi|659090128|ref|XP_008445852.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis melo])

HSP 1 Score: 437.2 bits (1123), Expect = 2.2e-119
Identity = 222/254 (87.40%), Postives = 233/254 (91.73%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SN NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 75  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 134

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSNGGGPR
Sbjct: 135 TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNGGGPR 194

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TT+A +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GY+NG
Sbjct: 195 TTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNG 254

Query: 183 HYRQIYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMS 242
           HY Q+YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMS
Sbjct: 255 HYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMS 314

Query: 243 KPASVAPTPGKGGG 248
           KP +V P PG  GG
Sbjct: 315 KPTTVGPNPGTVGG 327

[Close]
BLAST of CmaCh04G002640 vs. NCBI nr
Match: gi|778700777|ref|XP_011654915.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118
Identity = 219/248 (88.31%), Postives = 228/248 (91.94%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           S+ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSN GGPR
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGGPR 132

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TTSA +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GYMNG
Sbjct: 133 TTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNG 192

Query: 183 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSK 242
           HY Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSK
Sbjct: 193 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 252

[Close]
BLAST of CmaCh04G002640 vs. NCBI nr
Match: gi|659090130|ref|XP_008445853.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis melo])

HSP 1 Score: 432.6 bits (1111), Expect = 5.3e-118
Identity = 219/249 (87.95%), Postives = 230/249 (92.37%), Query Frame = 1 

Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SN NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 75  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 134

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSNGGGPR
Sbjct: 135 TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNGGGPR 194

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TT+A +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GY+NG
Sbjct: 195 TTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNG 254

Query: 183 HYRQIYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMS 242
           HY Q+YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMS
Sbjct: 255 HYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMS 314

[Close]
BLAST of CmaCh04G002640 vs. NCBI nr
Match: gi|359486705|ref|XP_002278641.2| (PREDICTED: RNA-binding protein 38 isoform X1 [Vitis vinifera])

HSP 1 Score: 342.4 bits (877), Expect = 7.2e-91
Identity = 179/255 (70.20%), Postives = 201/255 (78.82%), Query Frame = 1 

Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M  +N  G FGDTTLTKVFVGGLAWETPKEAMRDHFEK+GEILEAVIISDKLTGRSKGYG
Sbjct: 1   MTMSNAIGQFGDTTLTKVFVGGLAWETPKEAMRDHFEKYGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFK+ E+AKKACED+ P+INGRRANCNLASLGARR   +AS+TPP    H GSNGG  
Sbjct: 61  FVTFKEPEAAKKACEDATPMINGRRANCNLASLGARRPRSAASSTPP----HQGSNGGS- 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKV-----G 180
           R TSA   +HVQWYYPAGT    F HQ HQAVPFYGYSP+  Y+A DISYNHK+      
Sbjct: 121 RPTSAAPASHVQWYYPAGTPAPPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGS 180

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPP-SSIMSK 240
           YMNGH+ Q+YPGQAMVGAN LMPMYP YH+HQS  MG PAH++PP+    +P   +I+SK
Sbjct: 181 YMNGHFSQVYPGQAMVGANALMPMYPFYHFHQSQTMGHPAHMFPPTTVGPMPTVPAIISK 240

Query: 241 PASVAPTPG-KGGGE 249
           P S+AP  G  GGGE
Sbjct: 241 PTSMAPNTGAMGGGE 248

The following BLAST results are available for this feature:
BLAST of CmaCh04G002640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH2.3e-6052.38Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RB24B_XENLA3.2e-2257.65RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1[more]
RB24A_XENLA3.2e-2257.65RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1[more]
RBM24_XENTR3.2e-2257.65RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1[more]
RBM24_CHICK3.2e-2257.65RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2[more]
BLAST of CmaCh04G002640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNL6_CUCSA3.0e-12087.75Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175910 PE=4 SV=1[more]
M5XKH9_PRUPE8.6e-9173.62Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 S... [more]
W9SAA0_9ROSA5.6e-9069.88RNA-binding protein 38 OS=Morus notabilis GN=L484_014118 PE=4 SV=1[more]
A0A067LNV3_JATCU7.3e-9069.65Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1[more]
F6HNK5_VITVI9.5e-9070.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03610 PE=4 SV=... [more]
BLAST of CmaCh04G002640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54770.11.3e-6152.38 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22910.35.8e-3842.44 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.19.5e-3341.90 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.11.2e-3240.89 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.11.6e-3237.41 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmaCh04G002640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451717|ref|XP_004143608.1|4.3e-12087.75PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus][more]
gi|659090128|ref|XP_008445852.1|2.2e-11987.40PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis melo][more]
gi|778700777|ref|XP_011654915.1|1.1e-11888.31PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus][more]
gi|659090130|ref|XP_008445853.1|5.3e-11887.95PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis melo][more]
gi|359486705|ref|XP_002278641.2|7.2e-9170.20PREDICTED: RNA-binding protein 38 isoform X1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0006950 response to stress
biological_process GO:0010029 regulation of seed germination
biological_process GO:0009651 response to salt stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002640.1CmaCh04G002640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..75
score: 1.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..89
score: 1.1
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 16..93
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 16..94
score: 1.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 14..119
score: 2.82
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 12..97
score: 1.2
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 12..97
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G002640Cucsa.165980Cucumber (Gy14) v1cgycmaB0471
CmaCh04G002640Cla020077Watermelon (97103) v1cmawmB724
CmaCh04G002640Csa5G175910Cucumber (Chinese Long) v2cmacuB747
CmaCh04G002640MELO3C011727Melon (DHL92) v3.5.1cmameB654
CmaCh04G002640ClCG02G013870Watermelon (Charleston Gray)cmawcgB642
CmaCh04G002640CSPI05G08850Wild cucumber (PI 183967)cmacpiB757
CmaCh04G002640CmoCh04G013130Cucurbita moschata (Rifu)cmacmoB730
CmaCh04G002640CmoCh04G002720Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G002640Lsi04G008160Bottle gourd (USVL1VR-Ls)cmalsiB677
CmaCh04G002640Cp4.1LG01g04230Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G002640Cp4.1LG01g10290Cucurbita pepo (Zucchini)cmacpeB722
CmaCh04G002640MELO3C011727.2Melon (DHL92) v3.6.1cmamedB738
CmaCh04G002640CsaV3_5G006290Cucumber (Chinese Long) v3cmacucB0883
CmaCh04G002640Cla97C02G039510Watermelon (97103) v2cmawmbB741
CmaCh04G002640Bhi07G000872Wax gourdcmawgoB0894
CmaCh04G002640CsGy5G006240Cucumber (Gy14) v2cgybcmaB674
CmaCh04G002640Carg25667Silver-seed gourdcarcmaB1179
CmaCh04G002640Carg02067Silver-seed gourdcarcmaB1171
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G002640CmaCh04G012400Cucurbita maxima (Rimu)cmacmaB531
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G002640Cucurbita maxima (Rimu)cmacmaB234
CmaCh04G002640Cucurbita maxima (Rimu)cmacmaB319
CmaCh04G002640Cucurbita maxima (Rimu)cmacmaB486
CmaCh04G002640Cucumber (Gy14) v1cgycmaB0845
CmaCh04G002640Cucurbita moschata (Rifu)cmacmoB719
CmaCh04G002640Cucurbita moschata (Rifu)cmacmoB722
CmaCh04G002640Wild cucumber (PI 183967)cmacpiB763
CmaCh04G002640Cucumber (Chinese Long) v2cmacuB701
CmaCh04G002640Cucumber (Chinese Long) v2cmacuB754
CmaCh04G002640Melon (DHL92) v3.5.1cmameB631
CmaCh04G002640Watermelon (97103) v1cmawmB650
CmaCh04G002640Cucurbita pepo (Zucchini)cmacpeB751
CmaCh04G002640Bottle gourd (USVL1VR-Ls)cmalsiB630
CmaCh04G002640Bottle gourd (USVL1VR-Ls)cmalsiB646
CmaCh04G002640Silver-seed gourdcarcmaB0427
CmaCh04G002640Silver-seed gourdcarcmaB0215
CmaCh04G002640Cucumber (Chinese Long) v3cmacucB0830
CmaCh04G002640Cucumber (Chinese Long) v3cmacucB0850
CmaCh04G002640Cucumber (Chinese Long) v3cmacucB0892
CmaCh04G002640Cucumber (Chinese Long) v3cmacucB0915
CmaCh04G002640Watermelon (97103) v2cmawmbB743