Carg25667 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25667
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein 38
Location	Cucurbita_argyrosperma_scaffold_291 : 30950 .. 32632 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCAACAATAATGCTGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACTCCCAAGGAAGCGATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACGGGCAGATCCAAGGGCTATGGATTTGTAAGTCTGGAATTCATTCATTGAATCGCAATGTGAATCGATTGGATTTCATTTTTGTTGATTTCTGTTTTTTGATTTTAAAATTAGGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGTAAACGATTCCTCTCTTCCTCTCTCTGTGCATGATGAAACTAGTCAATTCGTTACTCGACAATGGCGTTTTCGTAGTTTCTCTTAGAAATTTCGGACGGTGGAGATCTCACGTTGGTTTTGTGATGCCATTGAAGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGGAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTAGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGGTACACCTTAAAGATCCTACACCTCTTTCGTATTCTAACATTACCCATCTTTATACAGTTAATTTCCTTTTTTTTTCCCTTTTTAAATTAACGTAAATTTATAATTATATTTAGATATTCCCCAAGCCCCACTTATATCGCTACCGATATCAGTTACAACCACGTAAGCATTTTTATTCCATGTTAAATTATAATTTAAATTAATAAGAATTGTTGGAAATATATAAACGGCGACGTTTCATGGTGAATTACAGAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCTTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTCCCTTCTTACTTCTCTTCGCTTCCCCCATTTTTTGTTTAAATTCTTCAAATTAAACGCTGAATTAGAGAGAGATTTGATGAAAACAGAATTTAAATCCATAAATAAAGAGAGAGGAATCAGAGTCGTTCACGTGAAAGGGTGATTTTAGTGAAGGGTCTCCTCCCCCACTGCCAACTGGCGTCTCTGGGTCCCACGTGGCCAGCTTGATCTGCCGGTCGTGGGGTGGTCTCTTGCTGTCCCTTTCCAGATGTTAATATTCCCTAATGTTGAGGACTCTTTTGCAAAATCAACTTTCTTTTCTTTCTTTTTCTGGATTTGTAAATAAAGTGTTGGTGAAGATACCAAAAATATATAATAATTTGTTTAAAACTTCAGTGTGGGTATGATAATGAAACTGATATTAGAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTAAAGTCGGAGGAGAATGCATGCAATGGAAAGAAGAAGAAGAAGATGAAGATGATAATGATGGTAAAAGAAGAGCACAGAAGAATTGA

mRNA sequence

ATGATGAGCAACAATAATGCTGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACTCCCAAGGAAGCGATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACGGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGGAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTAGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATATCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCTTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGTCGGAGGAGAATGCATGCAATGGAAAGAAGAAGAAGAAGATGAAGATGATAATGATGGTAAAAGAAGAGCACAGAAGAATTGA

Coding sequence (CDS)

ATGATGAGCAACAATAATGCTGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACTCCCAAGGAAGCGATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACGGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGGAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTAGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATATCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCTTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGTCGGAGGAGAATGCATGCAATGGAAAGAAGAAGAAGAAGATGAAGATGATAATGATGGTAAAAGAAGAGCACAGAAGAATTGA

Protein sequence

MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAPTPGKVGGECMQWKEEEEDEDDNDGKRRAQKN

Homology

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BLAST of Carg25667 vs. NCBI nr
Match: XP_022941685.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 520.8 bits (1340), Expect = 2.8e-144
Identity = 267/271 (98.52%), Postives = 267/271 (98.52%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKVGGECMQWKEXXXXXXXXXXXRRAQKN 272
           TPGKVGGECMQWK XXXXXXXXXXX  AQKN
Sbjct: 241 TPGKVGGECMQWKXXXXXXXXXXXXXXAQKN 271

[Close]

BLAST of Carg25667 vs. NCBI nr
Match: XP_022992888.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 497.3 bits (1279), Expect = 3.3e-137
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGK 245
           TPGK
Sbjct: 241 TPGK 244

[Close]

BLAST of Carg25667 vs. NCBI nr
Match: XP_022941687.1 (probable RNA-binding protein ARP1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 493.4 bits (1269), Expect = 4.8e-136
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of Carg25667 vs. NCBI nr
Match: XP_022992897.1 (probable RNA-binding protein ARP1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 6.3e-136
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of Carg25667 vs. NCBI nr
Match: XP_023545248.1 (probable RNA-binding protein ARP1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447.6 bits (1150), Expect = 3.0e-122
Identity = 225/243 (92.59%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSA-SATPPQAPQHPGSNGGG 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSA                 G
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSAXXXXXXXXXXXXXXXXXG 120

Query: 121 PRTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNG 180
           PRTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNG
Sbjct: 121 PRTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNG 180

Query: 181 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVA 240
           HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVA
Sbjct: 181 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVA 240

Query: 241 PTP 243
           PTP
Sbjct: 241 PTP 243

[Close]

BLAST of Carg25667 vs. TAIR10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61
Identity = 143/275 (52.00%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVG-----YM 182
           T    GNH QWYYP+G        Q HQAVPFYGY PS  Y+A ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+                    G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMXXXXXXXXXXXXXXXXXXXGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKVGGECMQWK 254
            P P+ + P S       S  P  G VGGE +Q K
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQKK 258

[Close]

BLAST of Carg25667 vs. TAIR10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 11  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 70
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  KKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPR 122
           + AC D+ P+I+GRRANCNLASLG +R       + P  P H    GGG R
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR-------SKPSTPNH----GGGGR 107

[Close]

BLAST of Carg25667 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-33
Identity = 107/258 (41.47%), Postives = 132/258 (51.16%), Query Frame = 0


Query: 10  FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 69
           FGDTT TKVFVGGLAWET  E +R HFE++GEILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 70  AKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQ-HPGS----NGGGPRTTS 129
           A++AC D  PII+GRRANCNLASLG  R     +  P    +  P S    N  GPR   
Sbjct: 78  ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPR--G 137

Query: 130 APSGNHVQWYYPAGTYPTSFSHQPHQAVPF--YGYSPSPTYIATDISYNHKVGYMNGHYR 189
           +  GN     YP    P  +++Q     P+    Y P   Y  +   Y+    YM   Y 
Sbjct: 138 SLIGN-----YPY-QQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYS---PYMGQQYL 197

Query: 190 QIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIM---------- 248
           Q+Y     V +       P+Y Y Q        H Y      +VP S I+          
Sbjct: 198 QVYGVPGAVNS-------PVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTM 257

[Close]

BLAST of Carg25667 vs. TAIR10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-32
Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 4   NNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 63
           NNN     DT LTK+FVGGLAWET ++ MR +FE+FGEI+EAV+I+DK TGRSKGYGFVT
Sbjct: 13  NNNT---TDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 72

Query: 64  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQH 113
           FK+AE+A +AC++  P+I+GRRANCNLA LGA++        PP +P+H
Sbjct: 73  FKEAEAAMRACQNMNPVIDGRRANCNLACLGAQK------PRPPTSPRH 112

[Close]

BLAST of Carg25667 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-32
Identity = 77/154 (50.00%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 10  FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 69
           FGDTT TKVFVGGLAWET  E +R HF+++G+ILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 70  AKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTSAPSGN 129
           A++AC D  PII+GRRANCNLASLG  R      A  P AP           +  +P G 
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQ-YAVIPHAPGRVRPPSPYVGSVQSPRGL 137

Query: 130 HVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTY 164
           H             F   P+   P Y Y     Y
Sbjct: 138 H-------------FGSHPYHQPPTYNYQQGVVY 157

[Close]

BLAST of Carg25667 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-60
Identity = 143/275 (52.00%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVG-----YM 182
           T    GNH QWYYP+G        Q HQAVPFYGY PS  Y+A ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+                    G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMXXXXXXXXXXXXXXXXXXXGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKVGGECMQWK 254
            P P+ + P S       S  P  G VGGE +Q K
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQKK 258

[Close]

BLAST of Carg25667 vs. Swiss-Prot
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Carg25667 vs. Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Carg25667 vs. Swiss-Prot
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Carg25667 vs. Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Carg25667 vs. TrEMBL
Match: tr|A0A0A0KNL6|A0A0A0KNL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.6e-119
Identity = 222/249 (89.16%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 7   AGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKD 66
           AGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVTFKD
Sbjct: 17  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKD 76

Query: 67  AESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPRTTSA 126
           AESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSN GGPRTTSA
Sbjct: 77  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGGPRTTSA 136

Query: 127 PS--GNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGHYRQ 186
            +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTYIATDISYNHK+GYMNGHY Q
Sbjct: 137 ATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQ 196

Query: 187 IYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSKPASV 246
           +YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSKP +V
Sbjct: 197 MYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 256

Query: 247 APTPGKVGG 248
            P PG VGG
Sbjct: 257 GPNPGTVGG 264

[Close]

BLAST of Carg25667 vs. TrEMBL
Match: tr|A0A1S3BEI0|A0A1S3BEI0_CUCME (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 6.5e-113
Identity = 215/254 (84.65%), Postives = 224/254 (88.19%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SN NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 10  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 69

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PG       
Sbjct: 70  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGXXXXXXX 129

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNG 182
              A +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTYIATDISYNHK+GY+NG
Sbjct: 130 XXXAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNG 189

Query: 183 HYRQIYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMS 242
           HY Q+YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMS
Sbjct: 190 HYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMS 249

Query: 243 KPASVAPTPGKVGG 248
           KP +V P PG VGG
Sbjct: 250 KPTTVGPNPGTVGG 262

[Close]

BLAST of Carg25667 vs. TrEMBL
Match: tr|A0A1S3BD62|A0A1S3BD62_CUCME (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.4e-110
Identity = 211/249 (84.74%), Postives = 220/249 (88.35%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SN NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 10  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 69

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PG       
Sbjct: 70  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGXXXXXXX 129

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNG 182
              A +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTYIATDISYNHK+GY+NG
Sbjct: 130 XXXAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNG 189

Query: 183 HYRQIYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMS 242
           HY Q+YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMS
Sbjct: 190 HYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMS 249

[Close]

BLAST of Carg25667 vs. TrEMBL
Match: tr|A0A1R3HMN0|A0A1R3HMN0_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18139 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 5.3e-91
Identity = 185/255 (72.55%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M +NNN G FGDTTLTKVFVGGLAWETPKEAMR+HFEK+GEILEAVIISDK+TGRSKGYG
Sbjct: 4   MSNNNNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYG 63

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           F    +AE+AKKACED+ PIINGRRANCNLASLGARR   + +A PPQ     GSN  GP
Sbjct: 64  F----EAEAAKKACEDATPIINGRRANCNLASLGARRPKSANAAAPPQ----QGSN-VGP 123

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKV-----G 180
           R TSA   NHVQWYYPAGT  T F HQ HQAVPFYGY  SPTYIATDISYNHK+      
Sbjct: 124 RATSAAPANHVQWYYPAGTPATPFHHQHHQAVPFYGY--SPTYIATDISYNHKLSYTGGS 183

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPS---PTAAVPPSSIM 240
           YMNGHY Q+YPGQA+VGANTLMPMYPLYHYHQS  MG+PA  +PP+   P A V P++IM
Sbjct: 184 YMNGHYSQVYPGQAIVGANTLMPMYPLYHYHQSQTMGVPAQFFPPTTGGPIATV-PAAIM 243

Query: 241 SKP-ASVAPTPGKVG 247
           SKP A++AP PG VG
Sbjct: 244 SKPAAAIAPNPGTVG 246

[Close]

BLAST of Carg25667 vs. TrEMBL
Match: tr|A0A067LNV3|A0A067LNV3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06665 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.5e-90
Identity = 177/254 (69.69%), Postives = 205/254 (80.71%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           M  +N+ G FGDTTLTKVFVGGLAWETPKEAMR+HFEK+GEILEAVIISDK+TGRSKGYG
Sbjct: 1   MTLSNSIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKD E+AKKACED+ PIINGRRANCNLASLGARR  RSA+  PPQ     GSN  GP
Sbjct: 61  FVTFKDPEAAKKACEDATPIINGRRANCNLASLGARR-PRSATPGPPQ----QGSN-VGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKV-----G 180
           R+TS+   NHVQWYYPAG+    F HQ HQAVP+YGY  +PTY+ATD+SYNHK+      
Sbjct: 121 RSTSSAPVNHVQWYYPAGSPAAPFHHQHHQAVPYYGY--TPTYVATDVSYNHKLSYTGGS 180

Query: 181 YMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPS---PTAAVPPSSIM 240
           YMNGH+ Q+YPGQ ++GAN +MPMYPLYH+HQS  MG+PAHI+PP+   P   VP  +IM
Sbjct: 181 YMNGHFSQVYPGQPIMGANAVMPMYPLYHFHQSQTMGLPAHIFPPTTAGPITTVP--TIM 240

Query: 241 SKPASVAPTPGKVG 247
           SKP S+AP+PG VG
Sbjct: 241 SKPPSIAPSPGTVG 244

The following BLAST results are available for this feature:

BLAST of Carg25667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941685.1	2.8e-144	98.52	probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata]	[more]
XP_022992888.1	3.3e-137	99.18	probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima]	[more]
XP_022941687.1	4.8e-136	99.59	probable RNA-binding protein ARP1 isoform X2 [Cucurbita moschata]	[more]
XP_022992897.1	6.3e-136	99.17	probable RNA-binding protein ARP1 isoform X2 [Cucurbita maxima]	[more]
XP_023545248.1	3.0e-122	92.59	probable RNA-binding protein ARP1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25667 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54770.1	1.6e-61	52.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.3e-34	64.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	4.2e-33	41.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	1.6e-32	61.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	3.5e-32	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg25667 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	2.9e-60	52.00	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q9BX46\|RBM24_HUMAN	1.9e-22	58.82	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
sp\|Q6GQD3\|RB24A_XENLA	3.2e-22	57.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
sp\|Q9I8B3\|RB24B_XENLA	3.2e-22	57.65	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
sp\|Q5ZMA3\|RBM24_CHICK	3.2e-22	57.65	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Carg25667 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNL6\|A0A0A0KNL6_CUCSA	1.6e-119	89.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1	[more]
tr\|A0A1S3BEI0\|A0A1S3BEI0_CUCME	6.5e-113	84.65	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A1S3BD62\|A0A1S3BD62_CUCME	1.4e-110	84.74	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A1R3HMN0\|A0A1R3HMN0_COCAP	5.3e-91	72.55	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18139 PE=4 ...	[more]
tr\|A0A067LNV3\|A0A067LNV3_JATCU	4.5e-90	69.69	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06665 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25667-RA	Carg25667-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..75 e-value: 1.1E-17 score: 63.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 17.319
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..105 e-value: 5.2E-24 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..271
None	No IPR available	PANTHER	PTHR44374	FAMILY NOT NAMED	coord: 1..240
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 2.07804E-41 score: 138.132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 14..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25667	Cla020077	Watermelon (97103) v1	carwmB0852
Carg25667	Csa5G175910	Cucumber (Chinese Long) v2	carcuB0867
Carg25667	MELO3C011727	Melon (DHL92) v3.5.1	carmeB0841
Carg25667	ClCG02G013870	Watermelon (Charleston Gray)	carwcgB0825
Carg25667	CSPI05G08850	Wild cucumber (PI 183967)	carcpiB0887
Carg25667	Cucsa.165980	Cucumber (Gy14) v1	carcgyB0972
Carg25667	CmaCh04G012400	Cucurbita maxima (Rimu)	carcmaB1180
Carg25667	CmaCh04G002640	Cucurbita maxima (Rimu)	carcmaB1179
Carg25667	CmoCh04G013130	Cucurbita moschata (Rifu)	carcmoB1149
Carg25667	CmoCh04G002720	Cucurbita moschata (Rifu)	carcmoB1148
Carg25667	Lsi04G008160	Bottle gourd (USVL1VR-Ls)	carlsiB774
Carg25667	Cp4.1LG01g04230	Cucurbita pepo (Zucchini)	carcpeB1186
Carg25667	Cp4.1LG01g10290	Cucurbita pepo (Zucchini)	carcpeB1187
Carg25667	CsGy5G006240	Cucumber (Gy14) v2	carcgybB0841
Carg25667	MELO3C011727.2	Melon (DHL92) v3.6.1	carmedB0852
Carg25667	CsaV3_5G006290	Cucumber (Chinese Long) v3	carcucB0892
Carg25667	Cla97C02G039510	Watermelon (97103) v2	carwmbB0888
Carg25667	Bhi07G000872	Wax gourd	carwgoB0992

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25667	Carg02067	Silver-seed gourd	carcarB625

The following block(s) are covering this gene:

None