Cucsa.165980 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.165980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding protein 38
Location	scaffold01153 : 1288959 .. 1291486 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCATTTCTTTATTTCCATACCACTCTGTTTCTTCACAACACTTCTCTTTATTTAACCTTCTTCTTCTCTTCATCACCACCATTTTTCCTCCCATTTTAACTTAACTACTTCTAATTACTTCCTCATTAGCTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTAAGTGATGCAATAGTTAGCGGTATTGATTGATTCATTGATCTCTGTTTTGTTTCTTTGATTATTTAATGATTTATACGGATTTGGGATTTTTAATTAGGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGTTAATAAAAAAAaaCAACAAAAAAaCTTTCGAGTTCTTCCGATCATCAATGACATTTTTGATTATTTTTtGTTGAGTGGAGATCTGAACTTGGTTTGTGATATTTTGAAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGGTATACCTTAAGATCCCATGTTCTCTTCCGTATTTAATTTTCCCTCATTTATTTAAATCAAATTAAATGTAAGCTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCACCCCCTTTATTCCTTTTATTTTTATCTTAGGTTAATTAAATTAATAAGACGTAAGTTAGTTAAACGGCGACGTTTTTtCTTTGTAAATGGAACAGAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTCCGTTTTTACTTAACCCTTCTCCATTATCTTAACTCAAGTTTGTAGATTATTGTGTTATTTTGACGACGGTTGGCGTTTGTTTGCACATTGTTTTTGGTTACTGCATGTGGTAAAAACGAAAACAAAAaCAAAAAAAAAaCTCGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAAGAGAAAGAAAGAACGAAAGAAAAAAAAaGATGAGGCCGGGAGGGAGGCAAAAAaCAACAGATCAGAGTGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAGCGTCTTCTCCGTCAGTGCCAACTGGCGTGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACTCCAATTCCTCTTAATAATCCTTAACTTGAAGGACTCTTTTGCAATATCAACTACTTTTCTAGACCATTTTTTTtCAAAAaCTAAACCACCCATAGTAATATTGGTGCGTACAACTGTTTAGATGATGAGGTGAAGTGTTTGTAAATTTTGTATACAAGAGCCTTTATATTTCTTGTTGATCAGCATATTATTGGTTGTATTATCAGTTTTTGTTTTAAATGAAGTGTATAATTCTGGAGTAAGAAATAATGTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGATGCTGATGATGCATGGTAAAAGAAGAGCAGATAGAAGAATTTTAAGTATAAAAATGGGGAGAGGGCAGGCTAAGAGGGACTATTttttttAATTTATTTTTTtCTTTTTtAAATTTTtAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAGAAAGAAGAACAAAAAAAAaGAAAaGAAAAaTAACAGAGACAATGTGAAGCTGGTTGGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATAAAAAaCTAATTTTATTGTTTTTTtCCCTCTCCATTCTTCTCTCCTTCCCTATCATTTCCACAAACCAACACCTCTCTATATTACTTTCTATCTCGGTACTTTCGACCACCCTAAAAATGTTCATTTTCAGCCATAATGGCATTTATATGTGCAAAACACTGCTTGTGGTTTATATTTTTTCACTGCTA

mRNA sequence

TCTTCCATTTCTTTATTTCCATACCACTCTGTTTCTTCACAACACTTCTCTTTATTTAACCTTCTTCTTCTCTTCATCACCACCATTTTTCCTCCCATTTTAACTTAACTACTTCTAATTACTTCCTCATTAGCTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTACAGTTGGAGGCAGGGGATGAAGAAGATGCTGATGATGCATGGTAAAAGAAGAGCAGATAGAAGAATTTTAAGTATAAAAATGGGGAGAGGGCAGGCTAAGAGGGACtattttttttaatttatttttttcttttttaaatttttaatCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGaaagaaagaagaacaaaaaaaaagaaaagaaaaATAACAGAGACAATGTGAAGCTGGTTGGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCttttaattataaaaaactaattttattgtttttttCCCTCTCCATTCTTCTCTCCTTCCCTATCATTTCCACAAACCAACACCTCTCTATATTACTTTCTATCTCGGTACTTTCGACCACCCTAAAAATGTTCATTTTCAGCCATAATGGCATTTATATGTGCAAAACACTGCTTGTGGTTTATATTTTTTCACTGCTA

Coding sequence (CDS)

ATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTACAGTTGGAGGCAGGGGATGA

Protein sequence

MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVGPNPGTVGGRG*

Homology

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BLAST of Cucsa.165980 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-62
Identity = 145/285 (50.88%), Postives = 173/285 (60.70%), Query Frame = 1


Query: 6   TTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGR 65
           TT+NN N     G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT R
Sbjct: 2   TTSNNVN-----GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRR 61

Query: 66  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS 125
           SKGYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ      
Sbjct: 62  SKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ----- 121

Query: 126 NAGGPRTTSAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 185
              GP+  + AT P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N
Sbjct: 122 ---GPKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFN 181

Query: 186 HKLG-----YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQ 245
            K+G     YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQ
Sbjct: 182 QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQ 241

Query: 246 SHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVGPNPGTVGG 265
           S A+G       P P+ + P +   P           P  GTVGG
Sbjct: 242 SQAIGF------PQPSFSKPLSFSTP-----------PISGTVGG 252

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BLAST of Cucsa.165980 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-24
Identity = 73/192 (38.02%), Postives = 97/192 (50.52%), Query Frame = 1


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FGEI EAV+I+D+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGN 141
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG   G P+   A      
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRVMQPGFTFGVPQIHPAFIQRPY 126

Query: 142 HVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQA 201
            +  +Y    +P  F  QP   +P     P+ T       Y   + Y    Y Q Y   A
Sbjct: 127 GIPTHY---VYPQAF-MQPSVVIPH--IQPTATSATASSPY---IDYTGAAYAQ-YASAA 177

Query: 202 MVGANTLMPMYP 214
              A      YP
Sbjct: 187 TAAAAAAYEQYP 177

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BLAST of Cucsa.165980 vs. Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-23
Identity = 84/244 (34.43%), Postives = 114/244 (46.72%), Query Frame = 1


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGN 141
           +AC+D  PII+GR+AN NLA LGA+    +SA     Q   P                G 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQLHP---------AFIQRPFGL 126

Query: 142 HVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQA 201
             Q+ YP      P   QP   +P    +P P+  +  I YN        HYT       
Sbjct: 127 TPQYIYP------PAIVQPSVVIP----TPIPSLQSPYIDYNAATQAFT-HYT------- 186

Query: 202 MVGANTLMPMYPLYHYHQSHAMGMPAHIF------PPSPTTAGPFAAVPPTS-IMSKPTT 259
                     Y  Y Y  S A G   + +      P S TT       PPT+ I  +P  
Sbjct: 187 -------TAAYEQYPYAASPATGYMGYGYTSAVQQPLSATTTTATTGAPPTAYIQYQPQQ 216

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BLAST of Cucsa.165980 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 72/192 (37.50%), Postives = 96/192 (50.00%), Query Frame = 1


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGN 141
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG   G  +   A      
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPGFAFGVQQLHPALIQRPF 126

Query: 142 HVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQA 201
            +  +Y    +P  F  QP   +P       PT  A   S    + Y    Y Q     A
Sbjct: 127 GIPAHY---VYPQAF-VQPGVVIPHV----QPT--AAAASTTPYIDYTGAAYAQYSAAAA 177

Query: 202 MVGANTLMPMYP 214
              A      YP
Sbjct: 187 AAAAAAAYDQYP 177

[Close]

BLAST of Cucsa.165980 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-22
Identity = 82/238 (34.45%), Postives = 112/238 (47.06%), Query Frame = 1


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ T +S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGN 141
           +AC+D  PII+GR+AN NLA LGA+    +SA     Q   P         T     P  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYIYPPT 126

Query: 142 HVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQA 201
            VQ   P+   PTP    P    P+  Y+      A   +Y H   Y    Y Q YP  A
Sbjct: 127 IVQ---PSMVIPTPI---PSLQSPYIDYN------AATQAYTH---YTTAAYEQ-YPYAA 186

Query: 202 MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTS-IMSKPTTVGPN 259
                 +               G  + +  P  TT G     PPT+ I  +P  + P+
Sbjct: 187 SPATGYM-------------GYGYTSPVQQPLSTTTG----APPTAYIQYQPQQLQPD 211

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BLAST of Cucsa.165980 vs. TrEMBL
Match: A0A0A0KNL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 2.7e-158
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 1


Query: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNPGTVGGRG 267
           AAVPPTSIMSKPTTVGPNPGTVGGRG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPGTVGGRG 266

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BLAST of Cucsa.165980 vs. TrEMBL
Match: A0A061FMG1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_043069 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.7e-99
Identity = 192/256 (75.00%), Postives = 207/256 (80.86%), Query Frame = 1


Query: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73
           STN G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   STNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVT 63

Query: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133
           FKD E+AKKACED+ PIINGRRANCNLASLGARR   RSASA PP  PQ GSN  GPR  
Sbjct: 64  FKDPEAAKKACEDATPIINGRRANCNLASLGARR--PRSASAAPP--PQ-GSNV-GPRAA 123

Query: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----Y 193
           SA  AP N VQWYYPAGT  +PFHHQ HQ VPFYGYSP+  YIA DISYNHKL      Y
Sbjct: 124 SA--APANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGTY 183

Query: 194 MNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSI 253
           MNG ++Q+YPGQA+VGANTLMPMYP YHYHQS  MG+PAH+FP  PTTAGP   VP  +I
Sbjct: 184 MNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFP--PTTAGPITTVPAAAI 243

Query: 254 MSKP-TTVGPNPGTVG 264
           MSKP   + PN GTVG
Sbjct: 244 MSKPAAAMAPNSGTVG 247

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BLAST of Cucsa.165980 vs. TrEMBL
Match: M5XKH9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 192/253 (75.89%), Postives = 207/253 (81.82%), Query Frame = 1


Query: 18  GLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDA 77
           G FGDTTLTKVFVGGLAWETPKEA+R+HF K+GEILEAVIISDKLTGRSKGYGFVTFK+A
Sbjct: 10  GQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKLTGRSKGYGFVTFKEA 69

Query: 78  ESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASAT---PPQAPQPGSNAGGPRTTS 137
           E+AKKACED+ P+INGRRANCNLASLGARR   RSAS T   PP  PQ GSN GG R  S
Sbjct: 70  EAAKKACEDATPVINGRRANCNLASLGARR--PRSASTTTPPPPPPPQRGSNGGGAR--S 129

Query: 138 AATAPGNHVQWYY--PAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG----- 197
            + AP NHVQWYY  PAGT  TPFHHQ HQPVPFYGY  SPTYIA DISYNHKLG     
Sbjct: 130 MSPAPANHVQWYYPAPAGTPATPFHHQHHQPVPFYGY--SPTYIAADISYNHKLGYTGGA 189

Query: 198 YMNGHYT-QMYPGQAMVGANTLMPMYPLYHY-HQSHAMGMPAHIFPPSPTTAGPFAAVPP 257
           YMNGHY+ Q+YPGQ MVG NTLMPMYPLYHY HQSH MG+PAHIFP  PTT+G  AAVP 
Sbjct: 190 YMNGHYSPQVYPGQPMVGPNTLMPMYPLYHYHHQSHTMGLPAHIFP--PTTSGHVAAVP- 249

Query: 258 TSIMSKPTTVGPN 259
            +IMSKP ++ PN
Sbjct: 250 -TIMSKPASIAPN 252

[Close]

BLAST of Cucsa.165980 vs. TrEMBL
Match: A0A067LNV3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-98
Identity = 183/255 (71.76%), Postives = 209/255 (81.96%), Query Frame = 1


Query: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73
           S + G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   SNSIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVT 63

Query: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133
           FKD E+AKKACED+ PIINGRRANCNLASLGARR   RSA+   P  PQ GSN  GPR+T
Sbjct: 64  FKDPEAAKKACEDATPIINGRRANCNLASLGARR--PRSAT---PGPPQQGSNV-GPRST 123

Query: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKL-----GY 193
           S  +AP NHVQWYYPAG+   PFHHQ HQ VP+YGY  +PTY+ATD+SYNHKL      Y
Sbjct: 124 S--SAPVNHVQWYYPAGSPAAPFHHQHHQAVPYYGY--TPTYVATDVSYNHKLSYTGGSY 183

Query: 194 MNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSI 253
           MNGH++Q+YPGQ ++GAN +MPMYPLYH+HQS  MG+PAHIFP  PTTAGP   VP  +I
Sbjct: 184 MNGHFSQVYPGQPIMGANAVMPMYPLYHFHQSQTMGLPAHIFP--PTTAGPITTVP--TI 243

Query: 254 MSKPTTVGPNPGTVG 264
           MSKP ++ P+PGTVG
Sbjct: 244 MSKPPSIAPSPGTVG 244

[Close]

BLAST of Cucsa.165980 vs. TrEMBL
Match: A0A061FN74_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_043069 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.5e-97
Identity = 188/251 (74.90%), Postives = 203/251 (80.88%), Query Frame = 1


Query: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73
           STN G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   STNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVT 63

Query: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133
           FKD E+AKKACED+ PIINGRRANCNLASLGARR   RSASA PP  PQ GSN  GPR  
Sbjct: 64  FKDPEAAKKACEDATPIINGRRANCNLASLGARR--PRSASAAPP--PQ-GSNV-GPRAA 123

Query: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----Y 193
           SA  AP N VQWYYPAGT  +PFHHQ HQ VPFYGYSP+  YIA DISYNHKL      Y
Sbjct: 124 SA--APANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGTY 183

Query: 194 MNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSI 253
           MNG ++Q+YPGQA+VGANTLMPMYP YHYHQS  MG+PAH+FP  PTTAGP   VP  +I
Sbjct: 184 MNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFP--PTTAGPITTVPAAAI 242

Query: 254 MSKP-TTVGPN 259
           MSKP   + PN
Sbjct: 244 MSKPAAAMAPN 242

[Close]

BLAST of Cucsa.165980 vs. TAIR10
Match: AT3G54770.1 (AT3G54770.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-63
Identity = 145/285 (50.88%), Postives = 173/285 (60.70%), Query Frame = 1


Query: 6   TTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGR 65
           TT+NN N     G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT R
Sbjct: 2   TTSNNVN-----GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRR 61

Query: 66  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS 125
           SKGYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ      
Sbjct: 62  SKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ----- 121

Query: 126 NAGGPRTTSAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 185
              GP+  + AT P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N
Sbjct: 122 ---GPKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFN 181

Query: 186 HKLG-----YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQ 245
            K+G     YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQ
Sbjct: 182 QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQ 241

Query: 246 SHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVGPNPGTVGG 265
           S A+G       P P+ + P +   P           P  GTVGG
Sbjct: 242 SQAIGF------PQPSFSKPLSFSTP-----------PISGTVGG 252

[Close]

BLAST of Cucsa.165980 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-40
Identity = 98/235 (41.70%), Postives = 123/235 (52.34%), Query Frame = 1


Query: 21  GDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 80
           GDTT TKVFVGGLAWET KE M+ HF +FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 81  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPG 140
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G   GG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 141 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY-- 200
               +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y  
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGN 187

Query: 201 ----PGQAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIFPPS 234
                G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 188 RNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of Cucsa.165980 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-36
Identity = 95/208 (45.67%), Postives = 116/208 (55.77%), Query Frame = 1


Query: 20  FGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 79
           FGDTT TKVFVGGLAWET  E +R HF ++GEILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 80  AKKACEDSAPIINGRRANCNLASLGARRGGSRSA------SATPPQAPQPGSNAGGPRTT 139
           A++AC D  PII+GRRANCNLASLG  R     A          P +P  G N  GPR  
Sbjct: 78  ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIG-NVQGPR-- 137

Query: 140 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPF--YGYSPSPTYIATDISYNHKLGYMNG 199
              +  GN     YP    P P+++Q     P+    Y P   Y  +   Y+    YM  
Sbjct: 138 --GSLIGN-----YPY-QQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYS---PYMGQ 197

Query: 200 HYTQMYPGQAMVGANTLMPMYPLYHYHQ 220
            Y Q+Y     V +       P+Y Y Q
Sbjct: 198 QYLQVYGVPGAVNS-------PVYQYGQ 204

[Close]

BLAST of Cucsa.165980 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-36
Identity = 99/218 (45.41%), Postives = 119/218 (54.59%), Query Frame = 1


Query: 20  FGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 79
           FGDTT TKVFVGGLAWET  E +R HF ++G+ILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 80  AKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAP---QPGSNAGGPRTTSAA 139
           A++AC D  PII+GRRANCNLASLG  R   +   A  P AP   +P S    P   S  
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQ--YAVIPHAPGRVRPPS----PYVGSVQ 137

Query: 140 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTY------IATDISYNHKLG--- 199
           +  G H       G+HP   +HQP    P Y Y     Y         D  Y+   G   
Sbjct: 138 SPRGLHF------GSHP---YHQP----PTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYG 197

Query: 200 -YMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQ-SHAM 224
            YM   Y Q+Y     V +       P Y Y Q SH +
Sbjct: 198 PYMGQQYLQVYGVPGAVNS-------PGYQYGQLSHTI 209

[Close]

BLAST of Cucsa.165980 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-35
Identity = 93/222 (41.89%), Postives = 120/222 (54.05%), Query Frame = 1


Query: 11  NNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYG 70
           NN++T      DT LTK+FVGGLAWET ++ MR +F +FGEI+EAV+I+DK TGRSKGYG
Sbjct: 13  NNNTT------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 72

Query: 71  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS---NA 130
           FVTFK+AE+A +AC++  P+I+GRRANCNLA LGA++         PP +P+ G+    +
Sbjct: 73  FVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQK-------PRPPTSPRHGTGRFRS 132

Query: 131 GGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVP-----FYGYSPSPTYIATDISY 190
            G      A +P         A  H     H    P P     F GYS    Y      Y
Sbjct: 133 PGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMN--YY 192

Query: 191 NHKLGYMNGHYTQMYPGQAMVGANTLM----PMYPLYHYHQS 221
           NH L    G     Y G    G+  +     P YP Y+  QS
Sbjct: 193 NHHL--YGGQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQS 217

[Close]

BLAST of Cucsa.165980 vs. NCBI nr
Match: gi|449451717|ref|XP_004143608.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus])

HSP 1 Score: 565.8 bits (1457), Expect = 3.9e-158
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 1


Query: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNPGTVGGRG 267
           AAVPPTSIMSKPTTVGPNPGTVGGRG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPGTVGGRG 266

[Close]

BLAST of Cucsa.165980 vs. NCBI nr
Match: gi|778700777|ref|XP_011654915.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus])

HSP 1 Score: 551.2 bits (1419), Expect = 9.9e-154
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1


Query: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNP 260
           AAVPPTSIMSKPTTVGPNP
Sbjct: 241 AAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of Cucsa.165980 vs. NCBI nr
Match: gi|659090128|ref|XP_008445852.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis melo])

HSP 1 Score: 541.2 bits (1393), Expect = 1.0e-150
Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 1


Query: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 66  MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 125

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 126 KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 185

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 186 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 245

Query: 181 SYNHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 246 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 305

Query: 241 FAAVPPTSIMSKPTTVGPNPGTVGGRG 267
           FAAVPPTSIMSKPTTVGPNPGTVGGRG
Sbjct: 306 FAAVPPTSIMSKPTTVGPNPGTVGGRG 329

[Close]

BLAST of Cucsa.165980 vs. NCBI nr
Match: gi|659090130|ref|XP_008445853.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis melo])

HSP 1 Score: 526.6 bits (1355), Expect = 2.6e-146
Identity = 251/260 (96.54%), Postives = 254/260 (97.69%), Query Frame = 1


Query: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 66  MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 125

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 126 KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 185

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 186 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 245

Query: 181 SYNHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 246 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 305

Query: 241 FAAVPPTSIMSKPTTVGPNP 260
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 306 FAAVPPTSIMSKPTTVGPNP 322

[Close]

BLAST of Cucsa.165980 vs. NCBI nr
Match: gi|590564624|ref|XP_007009715.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 370.5 bits (950), Expect = 2.4e-99
Identity = 192/256 (75.00%), Postives = 207/256 (80.86%), Query Frame = 1


Query: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73
           STN G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   STNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVT 63

Query: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133
           FKD E+AKKACED+ PIINGRRANCNLASLGARR   RSASA PP  PQ GSN  GPR  
Sbjct: 64  FKDPEAAKKACEDATPIINGRRANCNLASLGARR--PRSASAAPP--PQ-GSNV-GPRAA 123

Query: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----Y 193
           SA  AP N VQWYYPAGT  +PFHHQ HQ VPFYGYSP+  YIA DISYNHKL      Y
Sbjct: 124 SA--APANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGTY 183

Query: 194 MNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSI 253
           MNG ++Q+YPGQA+VGANTLMPMYP YHYHQS  MG+PAH+FP  PTTAGP   VP  +I
Sbjct: 184 MNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFP--PTTAGPITTVPAAAI 243

Query: 254 MSKP-TTVGPNPGTVG 264
           MSKP   + PN GTVG
Sbjct: 244 MSKPAAAMAPNSGTVG 247

The following BLAST results are available for this feature:

BLAST of Cucsa.165980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	2.3e-62	50.88	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RBM24_DANRE	7.3e-24	38.02	RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1	[more]
RBM38_XENTR	4.8e-23	34.43	RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1	[more]
RBM24_HUMAN	4.0e-22	37.50	RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1	[more]
RBM38_XENLA	5.3e-22	34.45	RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2	[more]

BLAST of Cucsa.165980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6_CUCSA	2.7e-158	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175910 PE=4 SV=1	[more]
A0A061FMG1_THECC	1.7e-99	75.00	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_043069 PE=4 SV=1	[more]
M5XKH9_PRUPE	1.8e-98	75.89	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 S...	[more]
A0A067LNV3_JATCU	4.1e-98	71.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1	[more]
A0A061FN74_THECC	3.5e-97	74.90	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_043069 PE=4 SV=1	[more]

BLAST of Cucsa.165980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54770.1	1.3e-63	50.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	6.0e-40	41.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	3.1e-36	45.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	3.1e-36	45.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	2.6e-35	41.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.165980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451717\|ref\|XP_004143608.1\|	3.9e-158	100.00	PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus]	[more]
gi\|778700777\|ref\|XP_011654915.1\|	9.9e-154	100.00	PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus]	[more]
gi\|659090128\|ref\|XP_008445852.1\|	1.0e-150	96.63	PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis melo]	[more]
gi\|659090130\|ref\|XP_008445853.1\|	2.6e-146	96.54	PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis melo]	[more]
gi\|590564624\|ref\|XP_007009715.1\|	2.4e-99	75.00	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010029	regulation of seed germination
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.165980.1	Cucsa.165980.1	mRNA
Cucsa.165980.2	Cucsa.165980.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..85 score: 3.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..99 score: 3.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 26..103 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 23..106 score: 2.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 25..113 score: 1.16
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 153..192 score: 3.3E-37coord: 22..107 score: 3.3E-37coord: 209..255 score: 3.3
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 209..255 score: 3.3E-37coord: 153..192 score: 3.3E-37coord: 22..107 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.165980	Cla020077	Watermelon (97103) v1	cgywmB310
Cucsa.165980	Csa5G175910	Cucumber (Chinese Long) v2	cgycuB251
Cucsa.165980	MELO3C011727	Melon (DHL92) v3.5.1	cgymeB290
Cucsa.165980	ClCG02G013870	Watermelon (Charleston Gray)	cgywcgB290
Cucsa.165980	CSPI05G08850	Wild cucumber (PI 183967)	cgycpiB258
Cucsa.165980	CmaCh04G002640	Cucurbita maxima (Rimu)	cgycmaB0471
Cucsa.165980	CmaCh04G012400	Cucurbita maxima (Rimu)	cgycmaB0472
Cucsa.165980	CmoCh04G002720	Cucurbita moschata (Rifu)	cgycmoB0474
Cucsa.165980	CmoCh04G013130	Cucurbita moschata (Rifu)	cgycmoB0475
Cucsa.165980	Lsi04G008160	Bottle gourd (USVL1VR-Ls)	cgylsiB276
Cucsa.165980	Cp4.1LG01g04230	Cucurbita pepo (Zucchini)	cgycpeB0457
Cucsa.165980	Cp4.1LG01g10290	Cucurbita pepo (Zucchini)	cgycpeB0458
Cucsa.165980	MELO3C011727.2	Melon (DHL92) v3.6.1	cgymedB285
Cucsa.165980	CsaV3_5G006290	Cucumber (Chinese Long) v3	cgycucB264
Cucsa.165980	Cla97C02G039510	Watermelon (97103) v2	cgywmbB290
Cucsa.165980	Bhi07G000872	Wax gourd	cgywgoB338
Cucsa.165980	Carg02067	Silver-seed gourd	carcgyB0963
Cucsa.165980	Carg25667	Silver-seed gourd	carcgyB0972

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.165980	Silver-seed gourd	carcgyB0193
Cucsa.165980	Silver-seed gourd	carcgyB0358
Cucsa.165980	Cucumber (Chinese Long) v3	cgycucB262
Cucsa.165980	Cucumber (Chinese Long) v3	cgycucB265
Cucsa.165980	Cucumber (Chinese Long) v3	cgycucB266
Cucsa.165980	Cucumber (Gy14) v1	cgycgyB106
Cucsa.165980	Cucurbita maxima (Rimu)	cgycmaB0468
Cucsa.165980	Cucurbita maxima (Rimu)	cgycmaB0473
Cucsa.165980	Cucurbita moschata (Rifu)	cgycmoB0470
Cucsa.165980	Cucurbita moschata (Rifu)	cgycmoB0471
Cucsa.165980	Cucurbita moschata (Rifu)	cgycmoB0476
Cucsa.165980	Wild cucumber (PI 183967)	cgycpiB259
Cucsa.165980	Cucumber (Chinese Long) v2	cgycuB249
Cucsa.165980	Cucumber (Chinese Long) v2	cgycuB252
Cucsa.165980	Melon (DHL92) v3.5.1	cgymeB289
Cucsa.165980	Watermelon (97103) v1	cgywmB302
Cucsa.165980	Cucurbita pepo (Zucchini)	cgycpeB0456
Cucsa.165980	Cucurbita pepo (Zucchini)	cgycpeB0460
Cucsa.165980	Bottle gourd (USVL1VR-Ls)	cgylsiB272
Cucsa.165980	Bottle gourd (USVL1VR-Ls)	cgylsiB274