CsGy5G006240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G006240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RNA-binding protein 38
Location	Chr5 : 4171806 .. 4174036 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCACGTTGATGATAGATAGCCTTGAGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTTCTTCACAACACTTCTCTTTATTTAACCTTCTTCTTCTCTTCATCACCACCATTTTTCCTCCCATTTTAACTTAACTACTTCTAATTACTTCCTCATTAGCTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTAAGTGATGCAATAGTTAGCGGTATTGATTGATTCATTGATCTCTGTTTTGTTTCTTTGATTATTTAATGATTTATACGGATTTGGGATTTTTAATTAGGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGTTAATAAAAAAAAAAACAACAAAAAAAACTTTCGAGTTCTTCCGATCATCAATGACATTTTTGATTATTTTTTGTTGAGTGGAGATCTGAACTTGGTTTGTGATATTTTGAAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGGTATACCTTAAGATCCCATGTTCTCTTCCGTATTTAATTTTCCCTCATTTATTTAAATCAAATTAAATGTAAGCTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCACCCCTTTATTCCTTTTATTTTTATCTTAGGTTAATTAAATTAATAAGACGTAAGTTAGTTAAACGGCGACGTTTTTTCTTTGTAAATGGAACAGAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTCCGTTTTTACTTAACCCTTCTCCATTATCTTAACTCAAGTTTGTAGATTATTGTGTTATTTTGACGACGGTTGGCGTTTGTTTGCACATTGTTTTTGGTTACTGCATGTGGTAAAAACGAAAACAAAAACAAAAAAAAAAACTCGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAAGAGAAAGAAAGAACGAAAGAAAAAAAAAAGATGAGGCCGGGAGGGAGGCAAAAAACAACAGATCAGAGTGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAGCGTCTTCTCCGTCAGTGCCAACTGGCGTGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACTCCAATTCCTCTTAATAATCCTTAACTTGAAGGACTCTTTTGCAATATCAACTACTTTTCTAGACCATTTTTTTTCAAAAACTAAACCACCCATAGTAATATTGGTGCGTACAACTGTTTAGATGATGAGGTGAAGTGTTTGTAAATTTTGTATACAAGAGCCTTTATATTTCTTGTTGATCAGCATATTATTGGTTGTATTATCAGTTTTTGTTTTAAATGAAGTGTATAATTCTGGAGTAAGAAATAATGTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGATGCTGATGATGCATGGTAAAAGAAGAGCAGATAGAAGAATTTTAAGTATAAAAATGGGGAGAGGGCAGGCTAAGAGGGACTATTTTTTTTAATTTATTTTTTTCTTTTTTAAATTTTT

mRNA sequence

GTTCACGTTGATGATAGATAGCCTTGAGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTTCTTCACAACACTTCTCTTTATTTAACCTTCTTCTTCTCTTCATCACCACCATTTTTCCTCCCATTTTAACTTAACTACTTCTAATTACTTCCTCATTAGCTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTCCGTTTTTACTTAACCCTTCTCCATTATCTTAACTCAAGTTTGTAGATTATTGTGTTATTTTGACGACGGTTGGCGTTTGTTTGCACATTGTTTTTGGTTACTGCATGTGGTAAAAACGAAAACAAAAACAAAAAAAAAAACTCGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAAGAGAAAGAAAGAACGAAAGAAAAAAAAAAGATGAGGCCGGGAGGGAGGCAAAAAACAACAGATCAGAGTGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAGCGTCTTCTCCGTCAGTGCCAACTGGCGTGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACTCCAATTCCTCTTAATAATCCTTAACTTGAAGGACTCTTTTGCAATATCAACTACTTTTCTAGACCATTTTTTTTCAAAAACTAAACCACCCATAGTAATATTGGTGCGTACAACTGTTTAGATGATGAGGTGAAGTGTTTGTAAATTTTGTATACAAGAGCCTTTATATTTCTTGTTGATCAGCATATTATTGGTTGTATTATCAGTTTTTGTTTTAAATGAAGTGTATAATTCTGGAGTAAGAAATAATGTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGATGCTGATGATGCATGGTAAAAGAAGAGCAGATAGAAGAATTTTAAGTATAAAAATGGGGAGAGGGCAGGCTAAGAGGGACTATTTTTTTTAATTTATTTTTTTCTTTTTTAAATTTTT

Coding sequence (CDS)

ATGACGATGATGACCACCACCACCAACAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTCCGTTTTTACTTAACCCTTCTCCATTATCTTAA

Protein sequence

MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVGPNPGPFLLNPSPLS

Homology

[Close]

BLAST of CsGy5G006240 vs. NCBI nr
Match: XP_004143608.1 (PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus] >KGN50469.1 hypothetical protein Csa_5G175910 [Cucumis sativus])

HSP 1 Score: 503.1 bits (1294), Expect = 6.1e-139
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNPG 261
           AAVPPTSIMSKPTTVGPNPG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPG 260

[Close]

BLAST of CsGy5G006240 vs. NCBI nr
Match: XP_011654915.1 (PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 3.0e-138
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNP 260
           AAVPPTSIMSKPTTVGPNP
Sbjct: 241 AAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of CsGy5G006240 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 469.2 bits (1206), Expect = 9.7e-129
Identity = 232/245 (94.69%), Postives = 233/245 (95.10%), Query Frame = 0


Query: 17  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKD 76
           AGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVTFKD
Sbjct: 14  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKD 73

Query: 77  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAA 136
           AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG          AA
Sbjct: 74  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGXXXXXXXXXXAA 133

Query: 137 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQM 196
           TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGY+NGHYTQM
Sbjct: 134 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGHYTQM 193

Query: 197 YPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 256
           YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV
Sbjct: 194 YPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 253

Query: 257 GPNPG 261
           GPNPG
Sbjct: 254 GPNPG 258

[Close]

BLAST of CsGy5G006240 vs. NCBI nr
Match: XP_008445853.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo])

HSP 1 Score: 466.5 bits (1199), Expect = 6.3e-128
Identity = 231/244 (94.67%), Postives = 232/244 (95.08%), Query Frame = 0


Query: 17  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKD 76
           AGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVTFKD
Sbjct: 14  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKD 73

Query: 77  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAA 136
           AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG          AA
Sbjct: 74  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGXXXXXXXXXXAA 133

Query: 137 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQM 196
           TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGY+NGHYTQM
Sbjct: 134 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGHYTQM 193

Query: 197 YPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 256
           YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV
Sbjct: 194 YPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 253

Query: 257 GPNP 260
           GPNP
Sbjct: 254 GPNP 257

[Close]

BLAST of CsGy5G006240 vs. NCBI nr
Match: XP_022957204.1 (probable RNA-binding protein ARP1 isoform X4 [Cucurbita moschata])

HSP 1 Score: 436.4 bits (1121), Expect = 7.0e-119
Identity = 220/248 (88.71%), Postives = 228/248 (91.94%), Query Frame = 0


Query: 19  LFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAE 78
           +FGDTTLTKVFVGGLAWETPKEAMRDHF KFG+ILEAVII+DKLTGRSKGYGFVTFK+AE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKEAE 60

Query: 79  SAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATA 138
           SAKKACEDSAPIINGRRANCNLASLGARR  SRSASATPPQ PQPGSN G PRTTSAA  
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARR-SSRSASATPPQGPQPGSNGGAPRTTSAAA- 120

Query: 139 PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNH-KLGYMN-GHYTQM 198
            GNHVQWYYPAGTHPT FHHQPHQ VPFYGYSPSPTYIATDISYNH K+GYMN G Y Q+
Sbjct: 121 -GNHVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTYIATDISYNHQKVGYMNGGPYAQI 180

Query: 199 YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVG 258
           YPGQAMVGANTLMPMYP+YHYHQS AMGMPAHIFPPSPT AGPFA VPPTSIMSKP +VG
Sbjct: 181 YPGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAGVPPTSIMSKPASVG 240

Query: 259 PNPGPFLL 265
           PNPGPF L
Sbjct: 241 PNPGPFSL 245

[Close]

BLAST of CsGy5G006240 vs. TAIR10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 218.4 bits (555), Expect = 5.4e-57
Identity = 135/257 (52.53%), Postives = 163/257 (63.42%), Query Frame = 0


Query: 18  GLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDA 77
           G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA
Sbjct: 9   GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68

Query: 78  ESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAAT 137
           ++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         GP+  + AT
Sbjct: 69  KAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------GPKNGNRAT 128

Query: 138 AP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----YMN 197
            P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G     YMN
Sbjct: 129 PPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMN 188

Query: 198 GHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIFP 248
           G+Y QM                    G+ MVG A+ ++P Y +Y YHQS A+G       
Sbjct: 189 GYYAQMXXXXXXXXXXXXXXXXXXXGGRVMVGAASPMVPFYTVYPYHQSQAIGF------ 247

[Close]

BLAST of CsGy5G006240 vs. TAIR10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 21  GDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 80
           GDTT TKVFVGGLAWET KE M+ HF +FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 81  KKACEDSAPIINGRRANCNLASLGARR 108
           + AC D+ P+I+GRRANCNLASLG +R
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR 94

[Close]

BLAST of CsGy5G006240 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-32
Identity = 95/208 (45.67%), Postives = 116/208 (55.77%), Query Frame = 0


Query: 20  FGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 79
           FGDTT TKVFVGGLAWET  E +R HF ++GEILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 80  AKKACEDSAPIINGRRANCNLASLGARRGGSRSA------SATPPQAPQPGSNAGGPRTT 139
           A++AC D  PII+GRRANCNLASLG  R     A          P +P  G N  GPR  
Sbjct: 78  ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIG-NVQGPR-- 137

Query: 140 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPF--YGYSPSPTYIATDISYNHKLGYMNG 199
              +  GN     YP    P P+++Q     P+    Y P   Y  +   Y+    YM  
Sbjct: 138 --GSLIGN-----YPY-QQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYS---PYMGQ 197

Query: 200 HYTQMYPGQAMVGANTLMPMYPLYHYHQ 220
            Y Q+Y     V +       P+Y Y Q
Sbjct: 198 QYLQVYGVPGAVNS-------PVYQYGQ 204

[Close]

BLAST of CsGy5G006240 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.6e-32
Identity = 84/159 (52.83%), Postives = 100/159 (62.89%), Query Frame = 0


Query: 20  FGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAES 79
           FGDTT TKVFVGGLAWET  E +R HF ++G+ILEAV+I+DK TGRSKGYGFVTF+D E+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 80  AKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAP---QPGSNAGGPRTTSAA 139
           A++AC D  PII+GRRANCNLASLG  R   +   A  P AP   +P S    P   S  
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQ--YAVIPHAPGRVRPPS----PYVGSVQ 137

Query: 140 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTY 176
           +  G H       G+HP   +HQP    P Y Y     Y
Sbjct: 138 SPRGLHF------GSHP---YHQP----PTYNYQQGVVY 157

[Close]

BLAST of CsGy5G006240 vs. TAIR10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-31
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DT LTK+FVGGLAWET ++ MR +F +FGEI+EAV+I+DK TGRSKGYGFVTFK+AE+A 
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS 126
           +AC++  P+I+GRRANCNLA LGA++         PP +P+ G+
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQK-------PRPPTSPRHGT 114

[Close]

BLAST of CsGy5G006240 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.8e-56
Identity = 135/257 (52.53%), Postives = 163/257 (63.42%), Query Frame = 0


Query: 18  GLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDA 77
           G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA
Sbjct: 9   GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68

Query: 78  ESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAAT 137
           ++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         GP+  + AT
Sbjct: 69  KAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------GPKNGNRAT 128

Query: 138 AP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----YMN 197
            P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G     YMN
Sbjct: 129 PPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMN 188

Query: 198 GHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIFP 248
           G+Y QM                    G+ MVG A+ ++P Y +Y YHQS A+G       
Sbjct: 189 GYYAQMXXXXXXXXXXXXXXXXXXXGGRVMVGAASPMVPFYTVYPYHQSQAIGF------ 247

[Close]

BLAST of CsGy5G006240 vs. Swiss-Prot
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-22
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FGEI EAV+I+D+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPR 132
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG   G P+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRVMQPGFTFGVPQ 105

[Close]

BLAST of CsGy5G006240 vs. Swiss-Prot
Match: sp|Q5ZJX4|RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.1e-22
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGAR 107
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CsGy5G006240 vs. Swiss-Prot
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 125
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of CsGy5G006240 vs. Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 125
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of CsGy5G006240 vs. TrEMBL
Match: tr|A0A0A0KNL6|A0A0A0KNL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 4.0e-139
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMXXXXXXXXXXXXXAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNPG 261
           AAVPPTSIMSKPTTVGPNPG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPG 260

[Close]

BLAST of CsGy5G006240 vs. TrEMBL
Match: tr|A0A1S3BEI0|A0A1S3BEI0_CUCME (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 6.4e-129
Identity = 232/245 (94.69%), Postives = 233/245 (95.10%), Query Frame = 0


Query: 17  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKD 76
           AGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVTFKD
Sbjct: 14  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKD 73

Query: 77  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAA 136
           AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG          AA
Sbjct: 74  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGXXXXXXXXXXAA 133

Query: 137 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQM 196
           TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGY+NGHYTQM
Sbjct: 134 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGHYTQM 193

Query: 197 YPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 256
           YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV
Sbjct: 194 YPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 253

Query: 257 GPNPG 261
           GPNPG
Sbjct: 254 GPNPG 258

[Close]

BLAST of CsGy5G006240 vs. TrEMBL
Match: tr|A0A1S3BD62|A0A1S3BD62_CUCME (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 4.2e-128
Identity = 231/244 (94.67%), Postives = 232/244 (95.08%), Query Frame = 0


Query: 17  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKD 76
           AGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVTFKD
Sbjct: 14  AGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKD 73

Query: 77  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAA 136
           AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG          AA
Sbjct: 74  AESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGXXXXXXXXXXAA 133

Query: 137 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQM 196
           TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGY+NGHYTQM
Sbjct: 134 TAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGHYTQM 193

Query: 197 YPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 256
           YPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV
Sbjct: 194 YPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTV 253

Query: 257 GPNP 260
           GPNP
Sbjct: 254 GPNP 257

[Close]

BLAST of CsGy5G006240 vs. TrEMBL
Match: tr|A0A061FMG1|A0A061FMG1_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_043069 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.9e-91
Identity = 186/249 (74.70%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 18  GLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDA 77
           G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVTFKD 
Sbjct: 8   GQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVTFKDP 67

Query: 78  ESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAAT 137
           E+AKKACED+ PIINGRRANCNLASLGARR   RSASA PP  PQ GSN  GPR  SA  
Sbjct: 68  EAAKKACEDATPIINGRRANCNLASLGARR--PRSASAAPP--PQ-GSNV-GPRAASA-- 127

Query: 138 APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG-----YMNGH 197
           AP N VQWYYPAGT  +PFHHQ HQ VPFYGYSP+  YIA DISYNHKL      YMNG 
Sbjct: 128 APANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPA--YIAADISYNHKLSYTGGTYMNGP 187

Query: 198 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 257
           ++Q+YPGQA+VGANTLMPMYP YHYHQS  MG+PAH+FP  PTTAGP   VP  +IMSKP
Sbjct: 188 FSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFP--PTTAGPITTVPAAAIMSKP 244

Query: 258 -TTVGPNPG 261
              + PN G
Sbjct: 248 AAAMAPNSG 244

[Close]

BLAST of CsGy5G006240 vs. TrEMBL
Match: tr|A0A067LNV3|A0A067LNV3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06665 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.9e-91
Identity = 179/248 (72.18%), Postives = 204/248 (82.26%), Query Frame = 0


Query: 18  GLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDA 77
           G FGDTTLTKVFVGGLAWETPKEAMR+HF K+GEILEAVIISDK+TGRSKGYGFVTFKD 
Sbjct: 8   GQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKVTGRSKGYGFVTFKDP 67

Query: 78  ESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAAT 137
           E+AKKACED+ PIINGRRANCNLASLGARR   RSA+   P  PQ GSN  GPR+TS  +
Sbjct: 68  EAAKKACEDATPIINGRRANCNLASLGARR--PRSAT---PGPPQQGSNV-GPRSTS--S 127

Query: 138 APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKL-----GYMNGH 197
           AP NHVQWYYPAG+   PFHHQ HQ VP+YGY  +PTY+ATD+SYNHKL      YMNGH
Sbjct: 128 APVNHVQWYYPAGSPAAPFHHQHHQAVPYYGY--TPTYVATDVSYNHKLSYTGGSYMNGH 187

Query: 198 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 257
           ++Q+YPGQ ++GAN +MPMYPLYH+HQS  MG+PAHIFP  PTTAGP   VP  +IMSKP
Sbjct: 188 FSQVYPGQPIMGANAVMPMYPLYHFHQSQTMGLPAHIFP--PTTAGPITTVP--TIMSKP 241

Query: 258 TTVGPNPG 261
            ++ P+PG
Sbjct: 248 PSIAPSPG 241

The following BLAST results are available for this feature:

BLAST of CsGy5G006240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143608.1	6.1e-139	100.00	PREDICTED: RNA-binding protein 38 isoform X1 [Cucumis sativus] >KGN50469.1 hypot...	[more]
XP_011654915.1	3.0e-138	100.00	PREDICTED: RNA-binding protein 38 isoform X2 [Cucumis sativus]	[more]
XP_008445852.2	9.7e-129	94.69	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]
XP_008445853.2	6.3e-128	94.67	PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo]	[more]
XP_022957204.1	7.0e-119	88.71	probable RNA-binding protein ARP1 isoform X4 [Cucurbita moschata]	[more]

BLAST of CsGy5G006240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54770.1	5.4e-57	52.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.1e-33	73.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.6e-32	45.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	4.6e-32	52.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	5.1e-31	60.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsGy5G006240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	9.8e-56	52.53	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q76LC6\|RBM24_DANRE	5.4e-22	50.00	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
sp\|Q5ZJX4\|RBM38_CHICK	7.1e-22	56.47	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
sp\|Q9BX46\|RBM24_HUMAN	1.2e-21	51.46	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
sp\|Q6GQD3\|RB24A_XENLA	2.1e-21	50.49	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]

BLAST of CsGy5G006240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNL6\|A0A0A0KNL6_CUCSA	4.0e-139	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1	[more]
tr\|A0A1S3BEI0\|A0A1S3BEI0_CUCME	6.4e-129	94.69	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A1S3BD62\|A0A1S3BD62_CUCME	4.2e-128	94.67	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A061FMG1\|A0A061FMG1_THECC	6.9e-91	74.70	RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_043069 PE...	[more]
tr\|A0A067LNV3\|A0A067LNV3_JATCU	6.9e-91	72.18	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06665 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G006240.1	CsGy5G006240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..99 e-value: 3.0E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..85 e-value: 4.2E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..103 score: 17.097
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..116 e-value: 5.2E-24 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..270
None	No IPR available	PANTHER	PTHR44374	FAMILY NOT NAMED	coord: 14..242
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 26..101 e-value: 1.31879E-40 score: 135.821
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 25..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G006240	Cla020077	Watermelon (97103) v1	cgybwmB401
CsGy5G006240	Csa5G175910	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G006240	MELO3C011727	Melon (DHL92) v3.5.1	cgybmeB310
CsGy5G006240	ClCG02G013870	Watermelon (Charleston Gray)	cgybwcgB347
CsGy5G006240	CSPI05G08850	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G006240	CmaCh04G002640	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G006240	CmaCh04G012400	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G006240	CmoCh04G013130	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G006240	Lsi04G008160	Bottle gourd (USVL1VR-Ls)	cgyblsiB331
CsGy5G006240	Cp4.1LG01g04230	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G006240	Cp4.1LG01g10290	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G006240	MELO3C011727.2	Melon (DHL92) v3.6.1	cgybmedB310
CsGy5G006240	CsaV3_5G006290	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G006240	Cla97C02G039510	Watermelon (97103) v2	cgybwmbB351
CsGy5G006240	Bhi07G000872	Wax gourd	cgybwgoB488
CsGy5G006240	Carg02067	Silver-seed gourd	carcgybB0832
CsGy5G006240	Carg25667	Silver-seed gourd	carcgybB0841

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G006240	Cucumber (Gy14) v2	cgybcgybB095
CsGy5G006240	Cucumber (Gy14) v2	cgybcgybB144
CsGy5G006240	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G006240	Cucumber (Chinese Long) v2	cgybcuB218
CsGy5G006240	Cucumber (Chinese Long) v3	cgybcucB234