CmaCh03G010730 (gene) Cucurbita maxima (Rimu)

NameCmaCh03G010730
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr03 : 7378261 .. 7379506 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTAGGAATTGTCGGAATCCCAAGTTGCCGAAATCCCTGTTCCTCTCTCTCTCTATAAATCATTACCCCCATTTTCTCTCTCATACACTTTCATTCACCCACAGACACAGACAAGGATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGAGGCTCCGGCTCCGGCACCGGCGCCAGAGCTTTCTCCGGAGAAGACGGTGGCCGAAACTAAACTGGAGAATGGCAGCAGCGGCGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGGTTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAGTGATCAGGTAATTTATTTTTTTTTATTTATTTGAACAATTTTTTTAATCTGTTTCGATCCTGAAAAAAAAAAAAGAAAAAGAATCTTGATGAACATGAGTAATAATGCAATGGTGGTTGTCTTTTTGCTTTCATTTCCCAATTTTCTTTTCTCTGTCAGCCCCTGTTTTTATCTTTTATTTTTTTCCCTTTTAATGTCTAATAAATTTATTAATTTAAAAAATGGATGTAATTTATTAATGAAAAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAAGAAGAGATCCCACTGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCACCGACGGAGGAGAAGCCGTTTGAGACCAACCCACCTGAGCCGGAGCCACCAGTTTCCGATTCTGTTACAGAAAATGCTGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAAGAAAAGCTTCGTGTGTCACTTTTTTTCTTCCTTTTTTTTGAGATAAACTGAGTAATAATAAATCAGTCTTCTGAGAATTATTGAATCTGAAGCCCATCAGCCCAGTTAGAATTCCGGCCCAATTTCGTCATCGGCCCAATTTCTCACCCAGCGTCTTCTAGCCCACTCGCGCATCCTCGGCCCAACTATAAAGCCCATAGTCGCAGCCCGCTCCATGATCCCCAATAGGTGGCCCATCAGCCCACGACTCAGTGACTCGCGACTTAACCCGTGGTCGACCTGACAGCCGACCCGAAGCCGTATTCTCGTGTGCGGCGCGCGTGCGGCTCAGACCCCTGCAGCCG

mRNA sequence

TCTTAGGAATTGTCGGAATCCCAAGTTGCCGAAATCCCTGTTCCTCTCTCTCTCTATAAATCATTACCCCCATTTTCTCTCTCATACACTTTCATTCACCCACAGACACAGACAAGGATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGAGGCTCCGGCTCCGGCACCGGCGCCAGAGCTTTCTCCGGAGAAGACGGTGGCCGAAACTAAACTGGAGAATGGCAGCAGCGGCGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGGTTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAGTGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAAGAAGAGATCCCACTGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCACCGACGGAGGAGAAGCCGTTTGAGACCAACCCACCTGAGCCGGAGCCACCAGTTTCCGATTCTGTTACAGAAAATGCTGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAAGAAAAGCTTCGTGTGTCACTTTTTTTCTTCCTTTTTTTTGAGATAAACTGAGTAATAATAAATCAGTCTTCTGAGAATTATTGAATCTGAAGCCCATCAGCCCAGTTAGAATTCCGGCCCAATTTCGTCATCGGCCCAATTTCTCACCCAGCGTCTTCTAGCCCACTCGCGCATCCTCGGCCCAACTATAAAGCCCATAGTCGCAGCCCGCTCCATGATCCCCAATAGGTGGCCCATCAGCCCACGACTCAGTGACTCGCGACTTAACCCGTGGTCGACCTGACAGCCGACCCGAAGCCGTATTCTCGTGTGCGGCGCGCGTGCGGCTCAGACCCCTGCAGCCG

Coding sequence (CDS)

ATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGAGGCTCCGGCTCCGGCACCGGCGCCAGAGCTTTCTCCGGAGAAGACGGTGGCCGAAACTAAACTGGAGAATGGCAGCAGCGGCGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGGTTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAGTGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGAGAAAGAAGAGATCCCACTGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCACCGACGGAGGAGAAGCCGTTTGAGACCAACCCACCTGAGCCGGAGCCACCAGTTTCCGATTCTGTTACAGAAAATGCTGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA

Protein sequence

MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKPRCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEKPFETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVISN
BLAST of CmaCh03G010730 vs. TrEMBL
Match: A0A0A0KFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G485140 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 93/185 (50.27%), Postives = 105/185 (56.76%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60
           MGACATKPK LKA+SG+AP   PA          ETK ++         +VD+DKV SKP
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFSDQ-----EKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPP 120
             L+ LF  Q     EKT  ADP EK+E                   T PPETEK+INP 
Sbjct: 61  PSLTDLFIHQKEGNKEKTEDADPPEKQE-------------------TNPPETEKQINPL 120

Query: 121 TEEKPFETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTE 176
            EEKP E NP  PEP VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTE
Sbjct: 121 PEEKPSENNP--PEPVVSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154

BLAST of CmaCh03G010730 vs. NCBI nr
Match: gi|659080828|ref|XP_008441002.1| (PREDICTED: neurofilament heavy polypeptide isoform X1 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 97/206 (47.09%), Postives = 112/206 (54.37%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60
           MGACATKPK +KA+SGEAP   PA          ETK ++         +VD+DKV SKP
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFSD------QEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINP 120
           R LS+LF D      +EKT  ADP EK+E                   T PPETEK+I+P
Sbjct: 61  RSLSNLFIDDQKEGNKEKTEGADPPEKQE-------------------TNPPETEKQIDP 120

Query: 121 PTEEKPFETNPPEPEPPVSDSVTENAEPI--------------------ESNTKVEVSDE 180
             EEKP E NP  PEP VSDSVTEN   I                    E   KVEV+ E
Sbjct: 121 LPEEKPSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTE 174

BLAST of CmaCh03G010730 vs. NCBI nr
Match: gi|700193184|gb|KGN48388.1| (hypothetical protein Csa_6G485140 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 93/185 (50.27%), Postives = 105/185 (56.76%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLENGSSGAQGTEIVDEDKVGSKP 60
           MGACATKPK LKA+SG+AP   PA          ETK ++         +VD+DKV SKP
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFSDQ-----EKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPP 120
             L+ LF  Q     EKT  ADP EK+E                   T PPETEK+INP 
Sbjct: 61  PSLTDLFIHQKEGNKEKTEDADPPEKQE-------------------TNPPETEKQINPL 120

Query: 121 TEEKPFETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTE 176
            EEKP E NP  PEP VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTE
Sbjct: 121 PEEKPSENNP--PEPVVSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154

BLAST of CmaCh03G010730 vs. NCBI nr
Match: gi|449461819|ref|XP_004148639.1| (PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 87/181 (48.07%), Postives = 100/181 (55.25%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLEN-GSSGAQGTEIVDEDKVGSK 60
           MGACATKPK LKA+SG+AP   PA          ETK ++ G   A+   + D+ K G+K
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEGNK 60

Query: 61  PRCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEK 120
                      EKT  ADP EK+E                   T PPETEK+INP  EEK
Sbjct: 61  -----------EKTEDADPPEKQE-------------------TNPPETEKQINPLPEEK 120

Query: 121 PFETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTETEEP 176
           P E NP  PEP VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTETE+ 
Sbjct: 121 PSENNP--PEPVVSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTETEKE 139

BLAST of CmaCh03G010730 vs. NCBI nr
Match: gi|659080832|ref|XP_008441004.1| (PREDICTED: neurofilament heavy polypeptide isoform X3 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 89/190 (46.84%), Postives = 104/190 (54.74%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLEN-GSSGAQGTEIVDEDKVGSK 60
           MGACATKPK +KA+SGEAP   PA          ETK ++ G   A+   + D+ K G+K
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEGNK 60

Query: 61  PRCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEK 120
                      EKT  ADP EK+E                   T PPETEK+I+P  EEK
Sbjct: 61  -----------EKTEGADPPEKQE-------------------TNPPETEKQIDPLPEEK 120

Query: 121 PFETNPPEPEPPVSDSVTENAEPIES---------NTKVEVSDENEPPPEKTESPEKPTE 180
           P E NP  PEP VSDSVTEN   I S           KVEV+ EN+ PPEKTES EKPTE
Sbjct: 121 PSENNP--PEPAVSDSVTENNTVISSEKLMETPNEEIKVEVTTENDVPPEKTESSEKPTE 147

BLAST of CmaCh03G010730 vs. NCBI nr
Match: gi|659080830|ref|XP_008441003.1| (PREDICTED: neurofilament medium polypeptide isoform X2 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 89/201 (44.28%), Postives = 104/201 (51.74%), Query Frame = 1

Query: 1   MGACATKPKVLKADSGEAPAPAPAPELSPEKTVAETKLEN-GSSGAQGTEIVDEDKVGSK 60
           MGACATKPK +KA+SGEAP   PA          ETK ++ G   A+   + D+ K G+K
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEGNK 60

Query: 61  PRCLSHLFSDQEKTAAADPSEKEEIPLETEKKMNPPPEEKPSETIPPETEKKINPPTEEK 120
                      EKT  ADP EK+E                   T PPETEK+I+P  EEK
Sbjct: 61  -----------EKTEGADPPEKQE-------------------TNPPETEKQIDPLPEEK 120

Query: 121 PFETNPPEPEPPVSDSVTENAEPI--------------------ESNTKVEVSDENEPPP 180
           P E NP  PEP VSDSVTEN   I                    E   KVEV+ EN+ PP
Sbjct: 121 PSENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTENDVPP 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFS6_CUCSA1.2e-2150.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G485140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659080828|ref|XP_008441002.1|1.0e-2147.09PREDICTED: neurofilament heavy polypeptide isoform X1 [Cucumis melo][more]
gi|700193184|gb|KGN48388.1|1.8e-2150.27hypothetical protein Csa_6G485140 [Cucumis sativus][more]
gi|449461819|ref|XP_004148639.1|4.5e-1748.07PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus][more]
gi|659080832|ref|XP_008441004.1|1.0e-1646.84PREDICTED: neurofilament heavy polypeptide isoform X3 [Cucumis melo][more]
gi|659080830|ref|XP_008441003.1|1.5e-1544.28PREDICTED: neurofilament medium polypeptide isoform X2 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G010730.1CmaCh03G010730.1mRNA


The following gene(s) are paralogous to this gene:

None