Cla97C01G014610 (gene) Watermelon (97103) v2

NameCla97C01G014610
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionpollen-specific leucine-rich repeat extensin-like protein 1 isoform X1
LocationCla97Chr01 : 28400216 .. 28405300 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTGTGCTACTAAGCCAAAGGTTCTGAAGGCGGAGGCCGGCGAGGCTCCGGCACCGGAGCCTTCTCCGGAGGAGGTGGCGGCCGGAACTAAACCGGAGAATGACGGTGATGAGAAGGCCGCGGAGATCGTCCATGATGACAAGGTGGATTCTAAGTCACGTTCTCTTAGTAATTTGTTCACCGATCAGGTAATTTTTTTTTTAATGTTTCGTAATTAATGTAATATTCTGGTTTCTTTTTATTCATTTTTCATTTATGTGGGTATTTTTTTTTTTTTTTTTTAAATTAATCTGTGTGTTGTTGATGATAATGGGTATGATTTCATTATTTTTTAATATGTTTCTGATTGTGTTTGGATGATGAGAAAATTTGAGAGAAAAAAAATAAAGAAAGAAAGAAAGAGAAAATAAATAGGGGAAAAATAAAGAATTGTGTGGTTGTCTTTTTCCTTTCATTTGCTCAGCTGCAGTTTTCTTTTTCTTTTAAATTTATTTTCTTGGACATTTCTGTATAACAACCAAAATGGGGAAATTTACTGTTTTTTATTTTCTACCTTGATTAATTATTAAAAAAAATTAAATCATAAATTTAGTTGTTTTGTTCTATTTTTATAATAAGTTAATTTTTAAATGAGTTGTTTTCAAATATAAAAAAATGAACCAAAATATTTTGCTATTATTTGTAAATATTTTCAACAATTTGTCATTTAAAATAACTTCCCTTTTGAAATTAGTATTTGATAAGTTTATGCTCTATTAAATGATTCAATTAGATGTAAATTAGATTTGTTCATTATAAAAATAGTGAAGTAGTTTGAGACCTATTAAATACAAAATTAAAGAAAAATATCAATTTATTTATCTAAATTTTGAGATTCATATTAATTAAAATTTTGAATAAATAATTGTATCAATTTACACCATCCTTAATTCAAATTTTGTTAGAAAAACATTGCAGGAGATTTGTAGTTGTATCAATTAAATTCATAGATTGTCATAGTAAGTGAACCAATTTAGACCATGTATTAATATTACTTTTGAAAATTGTCCATGCATCGACTCTTGCACATTTGTAAACTTCTTTAGTCGAACGATTAGAAGTGATGTATGGACAATTTTTAAGAAATTAAACTTGATTGTGAGTTTAAATTGATTCACTTATGAAAATTTAGAGTTTAATTGATAAAACTATAAGTAATCTATAGTGTTTATCTAAATAGAATGTAATGGATGACATTAAGTGATACACCTACAAAAATTTAATATTTAAATTAATATAATTATCATTAGTTTATGATTTCAATTGTTGTAGCTCCTAGAGTTTAGGAATATAAATTGATATTTTTCACAAAATTCAAGCTTCAAGCTCTTTTAAATACAAAATTAAAATTTGAAAATACACAAATCCATTAGATATTTTTGTAAAGTTCACTGTTGGACACTCACAGTCATAAAACAACTCTTGCGACAATGTTTTATATTTAAATTTGATGTTGAAATATTTTTAAAAGTTAAATAATGATATTGGATTATTTCCCTAATATATATATATATATATATATATATATATATATATATATATATATTTTAAATCAGTACCTTTCAATATATATGTGTGTGTTTTATTGTGCATAGATTACTATAGAAACATTCATCAATTTGAAATATAAATTGATGTAAAGTTGCTTTATTTTGAGTTTAATTAATATAAAGATAGGTGGTATGGAAACTTCAAACTAGATGTTTAAATTATATGAATTAGATTTGTATACATTCACCCTTCCCAATACCAAAGATATTGAATTATTTATTATTTAAAAAATAGAATGATGAATTACAATTTTAGTCTCTAAACTTATCTATTTTTTCCTTGAACTTTAATACGTGTCTATTAGGTTCTTAAACGTTTAATTTTGTGTTTAATAAACCATTAAACTTAAAAAGTATGTAATAGAATCCACAATTATAGTAAATTGAATGGATTGGAAAAGAAATGAAAAAAAAAAAAAAGAAAAAGAAAAAAGAAAAGAGGGTGTGGAATGGGTTTGGAGTATTATGAGGAGAAGGAGGGGGCAGTAGATGGGCGTGTGTCAAAATAAAAGATTCCATAATTTTGTTTTCTTTTGTTCCTTTTTTGCCATTTGTTGGTTTCAATAATATGGTTTCCCCATTCTCACCTAATTAACATAAATGTTGTCTGCCTTTTTTAAACCAAACCCCTTTCTCTACTTTATCACAACCATGCTTCTTCCTTTTCCTTTTCCTTCTCTAATTCTATTTTCTACTCTACTCTTCTCATTTTATTGTAATCTAAATGTAAATTAGATGAAAAAAAATTAAAAAAAAAAAAAACTTTTTCCATCTATTAACCACTTGGTTTAGTTTACATTCATAACGTTACATATTTTTCTCTAATTAAGTTTTGATTTGAATTTTTATTTGGTCCCCAGGTCTCAACATCTTACATTTTTGCTTTGTGTTTTGAGATTTGTATCCATTTGATCCATTGCTTTCAATTTTTGGTCTTTAGTGTTAATGTCTATTAATTAATTTAAAGTAGTTAAAATAAAATAAATTTTGCTAATTTTCATCACTATTAAAATTGAATTTAAATTTGTAATTCATAATTATTCTAAATTAATCATTTGAGAGTTAACACCAAAGACCAAAATGAGCGTTAGCAAATATTTGAGGATGAAAATATAAAATATTAAAATCTACGGACCGAATGAAACTAAACTCAAAGTAAATATATAACATTTAAAATTTTAGAGACCAAATAGAAATTAAACTCAAAACTTATGAATAAAATTGTAATAATATAAATATCAAATGAAAACGAGAATGTATGAACCAAATAGTTTTCATTAGTTTTTTAGTTAGAAGAAAAATAGAGCAAATTTAATTCAAGGCCCAGCCCAGTAACTTTAAGTGTTGTTTGGAGCTTTTGGACTCAAGTTGGGCGGGCCCAACATTTGAAAACTAAATTTATAGGCCTGCTCCATAAAATAACTAGTTGATTGGATTGTATTTTTTCCTTTTAGGAAATTACATTGAATAATACTTTAAGACTATTTCACTTAATATTACAAATATAACAAAACTTATCAATGATAGATTATCATTGGACTACTTTATTTAATTTTCTCCGCAGTATTGAGTTTTGACTGTATTTGTCATACACTTTTAGGCCTTGAGACCCTTGAAAAATCATTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTTACTTAATTTTGTTAGGTATAGGTGTTTTTCTTCTAGTATTCAAAACTCTTTATTTTTTGGAGCGTATATGATACCTGAGCTCGGGAGAGGAGATGTAAGAAAAATTACTTCTATCAGTGATATGGTCTATCACTGATAAACCCTGCTATTAATATCATCATCTATCACCAATAGACTTTGAAACCAAAATGTAAATTTTGCTATGCAAATACTTTAAACCTAATTGCTATATTTGTAACTGTCTTTTTTTTCCTCTTAAAAGGTTGAATTGTAATTTACGAATTGGCTTATAGATAACTATTTTTACTTTTCCTTTTAAATTTTTACACCAAATTAGATCATAAATTATTGACTCTGTTTTCAATTAAATTCTACCTTACGTTCTTTATAGGGGAAAAAATATGTAAATAATTTAGGTTAAGTTATTTTAAATATCCCTAGAGTTTGATTTTTTTTTTTTCTCAAGGCTTTGAAATTTTTTTATTCTTACTCTTGAAATTTGAGATGGTTATAAAAAATATATATGCTTCATTAAAACAAATATAAACGGACATGAAAGAATTAGAAGTTATACATAAAAGATTAAGTTCTTTTGTTATATTTTTTTCAACTAAAAAGACGTAGTTAAAATATTTTCATAATCAAGTTTTTTCAAGTCAATTATCAAGTCAATTTACATAAATATTGTGGTAAATTATGTCAAGTATGTCTTTGTCAAAATTTTTACAATTTAGTAGTTACATCAATTTCTATGATATTTTAATCATTGACAAAATGTTTCAACATTAGCTTTTGAATCAAATTTTAAAGCTAAAAAGTAAAGATGGAGGCCATTTTGGTAACCATTTGGTTTTTGTTTCTTATTTCATCTTTCTTAAGTGTATTCTTAGCAAATTTCAAAATCTGGTATGATTTTTTAAAATATAGGTAGTAAGTAAATAACAAACCAAAGAAACTTAGAGATCAAAAGAGTATTTATAGACTCAATTTTAAAAATCTAAATGGATATCAAATAAAAAAATTTCAAAGTCTACAGACATAATCGAACATTTTGTATATTTTTACTAGTAATTTATTGCACTAATACTTCAAACAAACAAAAAAATCCAGCTCAAACCAACCAAAAAGGCAAAAATAGAAAGAGTATTCTATGAAGGTAAAAGTAAATAACATAAATAAAAAAATTACAATACCTATAACCTTAATTTTCAAAAACCATTTTTTAAAAATAAAAATGAAATAAAAAATCGAATGTTACATGAATTTTTGTCTACATATTTTTTTAAACACGGTTAAAAATTTTTCTGTTTTTTTTTTTTTTAATACATAAAAATAATTAGGTGTATTTCGAAATTGAATTGCAATTATATATATATATATATATATATATATATATATAAAATAAAAGTAATTTGCAATAATTTGGATTTGTACAGAAAGAAGGAAGCAAGGAGTCCAAAGAAAACGAGAAGGCGGGAGCAGAAGATCCATCGGAGAAACAAGAGACCACCGCACATGAAACTGAAAAGCAAGTAATAAACCCACCGCCGGAGGAGAAGCGATCGGAAAACAACCCACCGGAGTCGGAGCCACCAGTTTCCGACTCTGTTACAGAGAACAAAACTATTATCTCATCAGAGAAACTAATGGAAACCCCAAACGAACCAAACAAACACAATGACCCAAAAATTGAAGACAAAATCAAAGTGGAAATTACCAATGAAAATGATCCTCCTCTTGAGAAGACAGAGTCATCGGAGAAACCAACCGAAACAGAGAAGGAAGTGAAGGTAATTAGCAATTAA

mRNA sequence

ATGGGAGCTTGTGCTACTAAGCCAAAGGTTCTGAAGGCGGAGGCCGGCGAGGCTCCGGCACCGGAGCCTTCTCCGGAGGAGGTGGCGGCCGGAACTAAACCGGAGAATGACGGTGATGAGAAGGCCGCGGAGATCGTCCATGATGACAAGGTGGATTCTAAGTCACGTTCTCTTAGTAATTTGTTCACCGATCAGAAAGAAGGAAGCAAGGAGTCCAAAGAAAACGAGAAGGCGGGAGCAGAAGATCCATCGGAGAAACAAGAGACCACCGCACATGAAACTGAAAAGCAAGTAATAAACCCACCGCCGGAGGAGAAGCGATCGGAAAACAACCCACCGGAGTCGGAGCCACCAGTTTCCGACTCTGTTACAGAGAACAAAACTATTATCTCATCAGAGAAACTAATGGAAACCCCAAACGAACCAAACAAACACAATGACCCAAAAATTGAAGACAAAATCAAAGTGGAAATTACCAATGAAAATGATCCTCCTCTTGAGAAGACAGAGTCATCGGAGAAACCAACCGAAACAGAGAAGGAAGTGAAGGTAATTAGCAATTAA

Coding sequence (CDS)

ATGGGAGCTTGTGCTACTAAGCCAAAGGTTCTGAAGGCGGAGGCCGGCGAGGCTCCGGCACCGGAGCCTTCTCCGGAGGAGGTGGCGGCCGGAACTAAACCGGAGAATGACGGTGATGAGAAGGCCGCGGAGATCGTCCATGATGACAAGGTGGATTCTAAGTCACGTTCTCTTAGTAATTTGTTCACCGATCAGAAAGAAGGAAGCAAGGAGTCCAAAGAAAACGAGAAGGCGGGAGCAGAAGATCCATCGGAGAAACAAGAGACCACCGCACATGAAACTGAAAAGCAAGTAATAAACCCACCGCCGGAGGAGAAGCGATCGGAAAACAACCCACCGGAGTCGGAGCCACCAGTTTCCGACTCTGTTACAGAGAACAAAACTATTATCTCATCAGAGAAACTAATGGAAACCCCAAACGAACCAAACAAACACAATGACCCAAAAATTGAAGACAAAATCAAAGTGGAAATTACCAATGAAAATGATCCTCCTCTTGAGAAGACAGAGTCATCGGAGAAACCAACCGAAACAGAGAAGGAAGTGAAGGTAATTAGCAATTAA

Protein sequence

MGACATKPKVLKAEAGEAPAPEPSPEEVAAGTKPENDGDEKAAEIVHDDKVDSKSRSLSNLFTDQKEGSKESKENEKAGAEDPSEKQETTAHETEKQVINPPPEEKRSENNPPESEPPVSDSVTENKTIISSEKLMETPNEPNKHNDPKIEDKIKVEITNENDPPLEKTESSEKPTETEKEVKVISN
BLAST of Cla97C01G014610 vs. NCBI nr
Match: XP_008441002.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-12
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 1  MGACATKPKVLKAEAGEAPAPEPSPEEVAAGTKPENDGDEKAAEI-VHDDKVDSKSRSLS 60
          MGACATKPK +KAE+GEA      PEE+ A TKP++ GDEKA EI V DDKVDSK RSLS
Sbjct: 1  MGACATKPKGMKAESGEA------PEELPAETKPDHVGDEKAKEIVVDDDKVDSKPRSLS 60

Query: 61 NLF-TDQKEGSKESKE 75
          NLF  DQKEG+KE  E
Sbjct: 61 NLFIDDQKEGNKEKTE 70

BLAST of Cla97C01G014610 vs. NCBI nr
Match: KGN48388.1 (hypothetical protein Csa_6G485140 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MGACATKPKVLKAEAGEAPAPEPSPEEVAAGTKPENDGDEKAAEI-VHDDKVDSKSRSLS 60
          MGACATKPK LKAE+G+A      PEE+ A TKP++ GDEKA EI V DDKVDSK  SL+
Sbjct: 1  MGACATKPKDLKAESGDA------PEELPAETKPDHVGDEKAKEIVVDDDKVDSKPPSLT 60

Query: 61 NLFTDQKEGSKESKEN 76
          +LF  QKEG+KE  E+
Sbjct: 61 DLFIHQKEGNKEKTED 70

BLAST of Cla97C01G014610 vs. NCBI nr
Match: XP_023543402.1 (early nodulin-75-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MGACATKPKVLKAEAGEAPAPEP----SPEEVAAGTKPEN-DGDEKAAEIVHDDKVDSKS 60
          MGACATKPKVLKA++G+A         S E+    TK EN   D +  EIV +DKVDSK 
Sbjct: 1  MGACATKPKVLKADSGDAXXXXXXXXLSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60

Query: 61 RSLSNLFTDQKE 68
          R LS+LF DQ++
Sbjct: 61 RCLSHLFNDQEK 72

BLAST of Cla97C01G014610 vs. NCBI nr
Match: XP_021684655.1 (probable serine/threonine-protein kinase kinX [Hevea brasiliensis])

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-04
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1  MGACATKPKVLKAEA-GEAPAPEPSPE-----------------EVAAGTKPENDGDEKA 60
          MGACATKPKVL+ +A    PA EP+ E                 EV      EN+GD+K 
Sbjct: 1  MGACATKPKVLRDDAQAPVPAAEPAVEESVSQVNKGERSLPLAKEVKENKVVENEGDDKV 60

Query: 61 AEIVHDDKVD---SKSRSLSNLFTDQKEGSKESKEN 76
           EIV DDK D   +K RSLSNLF + +EG +ES E+
Sbjct: 61 KEIVDDDKADDQSTKRRSLSNLFKEGEEG-RESAES 95

BLAST of Cla97C01G014610 vs. TrEMBL
Match: tr|A0A1S3B2G7|A0A1S3B2G7_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485247 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 1  MGACATKPKVLKAEAGEAPAPEPSPEEVAAGTKPENDGDEKAAEI-VHDDKVDSKSRSLS 60
          MGACATKPK +KAE+GEA      PEE+ A TKP++ GDEKA EI V DDKVDSK RSLS
Sbjct: 1  MGACATKPKGMKAESGEA------PEELPAETKPDHVGDEKAKEIVVDDDKVDSKPRSLS 60

Query: 61 NLF-TDQKEGSKESKE 75
          NLF  DQKEG+KE  E
Sbjct: 61 NLFIDDQKEGNKEKTE 70

BLAST of Cla97C01G014610 vs. TrEMBL
Match: tr|A0A0A0KFS6|A0A0A0KFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.4e-11
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MGACATKPKVLKAEAGEAPAPEPSPEEVAAGTKPENDGDEKAAEI-VHDDKVDSKSRSLS 60
          MGACATKPK LKAE+G+A      PEE+ A TKP++ GDEKA EI V DDKVDSK  SL+
Sbjct: 1  MGACATKPKDLKAESGDA------PEELPAETKPDHVGDEKAKEIVVDDDKVDSKPPSLT 60

Query: 61 NLFTDQKEGSKESKEN 76
          +LF  QKEG+KE  E+
Sbjct: 61 DLFIHQKEGNKEKTED 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008441002.18.8e-1268.42PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X... [more]
KGN48388.11.3e-1063.16hypothetical protein Csa_6G485140 [Cucumis sativus][more]
XP_023543402.11.8e-0452.78early nodulin-75-like [Cucurbita pepo subsp. pepo][more]
XP_021684655.18.8e-0445.83probable serine/threonine-protein kinase kinX [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
tr|A0A1S3B2G7|A0A1S3B2G7_CUCME5.8e-1268.42pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 OS=Cucumi... [more]
tr|A0A0A0KFS6|A0A0A0KFS6_CUCSA8.4e-1163.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006413 translational initiation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003743 translation initiation factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G014610.1Cla97C01G014610.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..187

The following gene(s) are paralogous to this gene:

None