Cp4.1LG10g03290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g03290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 2088498 .. 2089661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTCCCATAATTATTTGTGTTTTTCGTTGTTTCTTAGGAATTGTCGGAATCCCAAGTTGCCGAAATCCCTCTTCCTCTCTCTCTCTCTATAAATCATTACCCCCATTTTCTCTCTCATACATACACTTTCATTCACCCACAGACACAGACAAGGATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGACGCTCCGGCACCGGCTCCAGCGCCGGAGCTTTCTCAGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCAGCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGTAATTTATTTGAACTTTTTTTTTTTAATCTGTTTGGATCGTGAGAAAAAAAAAAAAAAAAAAANATGAGTAATAATGCAATGGTGGTTGTCTTTTCTCTGTCAGCCCCTGTTTTTATCTTTTATTTTTTTCCCTTTTAATGTCTAATAAATTTATTAATTTAAAAAATGGATGTAATTTATTAATGAAAAGGAGAAGACAGCAGCAGCGGATCCATCGGGGAAGGAAGAGATCCCACCGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGAAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCCGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAAGAAAAGCTTGGTGTGTCACTTTTTTTCTTCCTTTTTTTTTGAGATAAACCGAGTAATAATAAATCAGTCTTCTGAGAATTATTGAATCTGAAGCCCATCAGCCCAGTTAGCATTCCAGCCCAATTTCGTCCTCGGCCCAATTTTTCGCCCACTTGCGCATCCTCGGCCCAACTATAAAGCCCATAGTCGCAGCCCATCAGCCCACGACTCAGCGACTCACGACTTAACCCGTGGTCGACCCGACAGCCGACCCGACAGCCGACCGGAAGC

mRNA sequence

TTATTCCCATAATTATTTGTGTTTTTCGTTGTTTCTTAGGAATTGTCGGAATCCCAAGTTGCCGAAATCCCTCTTCCTCTCTCTCTCTCTATAAATCATTACCCCCATTTTCTCTCTCATACATACACTTTCATTCACCCACAGACACAGACAAGGATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGACGCTCCGGCACCGGCTCCAGCGCCGGAGCTTTCTCAGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCAGCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGGGAAGGAAGAGATCCCACCGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGAAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCCGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAAGAAAAGCTTGGTGTGTCACTTTTTTTCTTCCTTTTTTTTTGAGATAAACCGAGTAATAATAAATCAGTCTTCTGAGAATTATTGAATCTGAAGCCCATCAGCCCAGTTAGCATTCCAGCCCAATTTCGTCCTCGGCCCAATTTTTCGCCCACTTGCGCATCCTCGGCCCAACTATAAAGCCCATAGTCGCAGCCCATCAGCCCACGACTCAGCGACTCACGACTTAACCCGTGGTCGACCCGACAGCCGACCCGACAGCCGACCGGAAGC

Coding sequence (CDS)

ATGGGAGCTTGTGCGACGAAGCCAAAGGTTCTCAAGGCTGACTCCGGCGACGCTCCGGCACCGGCTCCAGCGCCGGAGCTTTCTCAGGAGAAGACGGTGCCCGAAACTAAACTGGAGAATGGCAGCAGCGACGCCCAGGGCACGGAGATCGTCGATGAAGACAAGGTGGATTCTAAGCCTCGTTGTCTCAGCCATTTGTTCAATGATCAGGAGAAGACAGCAGCAGCGGATCCATCGGGGAAGGAAGAGATCCCACCGGAAACTGAGAAGAAAATGAACCCACCGCCGGAGGAGAAGCCGTCTGAAACTATCCCACCGGAAACAGAGAAGAAAATAAACCCTCCGACGGAGAAGAAGCCGTCTGAGACCAACCCACCGGAGCCGGAGCCACCAGTTTCCGACTCTGTTACAGAAAATGCCGAACCAATTGAAAGCAATACCAAAGTCGAAGTTTCCGATGAGAACGAGCCTCCGCCTGAGAAGACAGAGTCGCCGGAGAAACCCACTGAAACAGAGGAACCAGTGATCAAAGTAATCAGCAATTAA

Protein sequence

MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKPRCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKPSETNPPEPEPPVSDSVTENAEPIESNTKVEVSDENEPPPEKTESPEKPTETEEPVIKVISN
Homology
[Close]
BLAST of Cp4.1LG10g03290 vs. TrEMBL
Match: A0A0A0KFS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G485140 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 93/185 (50.27%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK LKA+SGDAP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLF-----NDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPP 120
             L+ LF      ++EKT  ADP  K+E                   T PPETEK+INP 
Sbjct: 61  PSLTDLFIHQKEGNKEKTEDADPPEKQE-------------------TNPPETEKQINPL 120

Query: 121 TEKKPSETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTE 176
            E+KPSE NPPEP   VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTE
Sbjct: 121 PEEKPSENNPPEPV--VSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154

[Close]
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match: gi|700193184|gb|KGN48388.1| (hypothetical protein Csa_6G485140 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 93/185 (50.27%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK LKA+SGDAP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLF-----NDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPP 120
             L+ LF      ++EKT  ADP  K+E                   T PPETEK+INP 
Sbjct: 61  PSLTDLFIHQKEGNKEKTEDADPPEKQE-------------------TNPPETEKQINPL 120

Query: 121 TEKKPSETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTE 176
            E+KPSE NPPEP   VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTE
Sbjct: 121 PEEKPSENNPPEPV--VSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTE 154

[Close]
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match: gi|659080828|ref|XP_008441002.1| (PREDICTED: neurofilament heavy polypeptide isoform X1 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 95/200 (47.50%), Postives = 112/200 (56.00%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK +KA+SG+AP   PA          ETK ++   +     +VD+DKVDSKP
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKVDSKP 60

Query: 61  RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120
           R LS+LF D +K                EK     P EK  ET PPETEK+I+P  E+KP
Sbjct: 61  RSLSNLFIDDQKEG------------NKEKTEGADPPEK-QETNPPETEKQIDPLPEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAEPI--------------------ESNTKVEVSDENEPPPE 180
           SE NP  PEP VSDSVTEN   I                    E   KVEV+ EN+ PPE
Sbjct: 121 SENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTENDVPPE 174

[Close]
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match: gi|449461819|ref|XP_004148639.1| (PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 85/180 (47.22%), Postives = 100/180 (55.56%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK LKA+SGDAP   PA          ETK ++   +     +VD+DK +   
Sbjct: 1   MGACATKPKDLKAESGDAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEG-- 60

Query: 61  RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120
                   ++EKT  ADP  K+E                   T PPETEK+INP  E+KP
Sbjct: 61  --------NKEKTEDADPPEKQE-------------------TNPPETEKQINPLPEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAEPIESNT-----KVEVSDENEPPPEKTESPEKPTETEEPV 176
           SE NPPEP   VSDSVTEN    E  T     KVEV+ EN+ PPEKTES EKPTETE+ V
Sbjct: 121 SENNPPEPV--VSDSVTENKTVTEMETPDEAIKVEVTIENDVPPEKTESAEKPTETEKEV 139

[Close]
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match: gi|659080832|ref|XP_008441004.1| (PREDICTED: neurofilament heavy polypeptide isoform X3 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 85/189 (44.97%), Postives = 104/189 (55.03%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK +KA+SG+AP   PA          ETK ++   +     +VD+DK +   
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEG-- 60

Query: 61  RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120
                   ++EKT  ADP  K+E                   T PPETEK+I+P  E+KP
Sbjct: 61  --------NKEKTEGADPPEKQE-------------------TNPPETEKQIDPLPEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAEPIES---------NTKVEVSDENEPPPEKTESPEKPTET 180
           SE NP  PEP VSDSVTEN   I S           KVEV+ EN+ PPEKTES EKPTET
Sbjct: 121 SENNP--PEPAVSDSVTENNTVISSEKLMETPNEEIKVEVTTENDVPPEKTESSEKPTET 147

[Close]
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match: gi|659080830|ref|XP_008441003.1| (PREDICTED: neurofilament medium polypeptide isoform X2 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15
Identity = 85/200 (42.50%), Postives = 104/200 (52.00%), Query Frame = 1 

Query: 1   MGACATKPKVLKADSGDAPAPAPAPELSQEKTVPETKLENGSSDAQGTEIVDEDKVDSKP 60
           MGACATKPK +KA+SG+AP   PA          ETK ++   +     +VD+DK +   
Sbjct: 1   MGACATKPKGMKAESGEAPEELPA----------ETKPDHVGDEKAKEIVVDDDKKEG-- 60

Query: 61  RCLSHLFNDQEKTAAADPSGKEEIPPETEKKMNPPPEEKPSETIPPETEKKINPPTEKKP 120
                   ++EKT  ADP  K+E                   T PPETEK+I+P  E+KP
Sbjct: 61  --------NKEKTEGADPPEKQE-------------------TNPPETEKQIDPLPEEKP 120

Query: 121 SETNPPEPEPPVSDSVTENAEPI--------------------ESNTKVEVSDENEPPPE 180
           SE NP  PEP VSDSVTEN   I                    E   KVEV+ EN+ PPE
Sbjct: 121 SENNP--PEPAVSDSVTENNTVISSEKLMETPNEENKEIDPKNEDKIKVEVTTENDVPPE 158

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g03290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g03290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFS6_CUCSA1.5e-2250.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G485140 PE=4 SV=1[more]
BLAST of Cp4.1LG10g03290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g03290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193184|gb|KGN48388.1|2.1e-2250.27hypothetical protein Csa_6G485140 [Cucumis sativus][more]
gi|659080828|ref|XP_008441002.1|2.0e-2047.50PREDICTED: neurofilament heavy polypeptide isoform X1 [Cucumis melo][more]
gi|449461819|ref|XP_004148639.1|2.6e-1747.22PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus][more]
gi|659080832|ref|XP_008441004.1|5.0e-1644.97PREDICTED: neurofilament heavy polypeptide isoform X3 [Cucumis melo][more]
gi|659080830|ref|XP_008441003.1|7.2e-1542.50PREDICTED: neurofilament medium polypeptide isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03290.1Cp4.1LG10g03290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g03290CmaCh03G010730Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g03290CmoCh03G010670Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g03290MELO3C008028Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g03290MELO3C008028.2Melon (DHL92) v3.6.1cpemedB092
Cp4.1LG10g03290Carg10555Silver-seed gourdcarcpeB0337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g03290Silver-seed gourdcarcpeB1128
Cp4.1LG10g03290Silver-seed gourdcarcpeB1470
Cp4.1LG10g03290Silver-seed gourdcarcpeB1471
Cp4.1LG10g03290Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g03290Wax gourdcpewgoB0083
Cp4.1LG10g03290Wax gourdcpewgoB0087
Cp4.1LG10g03290Cucurbita pepo (Zucchini)cpecpeB068
Cp4.1LG10g03290Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g03290Cucurbita pepo (Zucchini)cpecpeB098
Cp4.1LG10g03290Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g03290Cucumber (Gy14) v1cgycpeB0663
Cp4.1LG10g03290Cucurbita maxima (Rimu)cmacpeB599
Cp4.1LG10g03290Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g03290Cucurbita moschata (Rifu)cmocpeB547
Cp4.1LG10g03290Cucurbita moschata (Rifu)cmocpeB548
Cp4.1LG10g03290Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g03290Wild cucumber (PI 183967)cpecpiB057
Cp4.1LG10g03290Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g03290Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g03290Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g03290Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g03290Watermelon (Charleston Gray)cpewcgB066
Cp4.1LG10g03290Watermelon (97103) v1cpewmB075
Cp4.1LG10g03290Watermelon (97103) v1cpewmB093
Cp4.1LG10g03290Cucumber (Gy14) v2cgybcpeB156
Cp4.1LG10g03290Cucumber (Gy14) v2cgybcpeB710