CmaCh02G009290 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G009290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_62
Location	Cma_Chr02 : 5528204 .. 5530455 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCGTCAAAGGAAACGCGTATTTTAGAGGACAACCACGCATGTTGACAAAACGTTGAGTATAAACGACGCCGAATTGCACTTGCATCGCATTGGCTCCCTCGTCGCCATTTGCTTCAAATCGCCGTCACTTTCACCAAGATCTTCATCAACCATCTACGCAGTGGAAAGAACACAGCACCACCACCGACAAACCGACCCCTCATTGATCGTTATGGGTGTAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTCCGCCTCCATCTACCCTTTTCTTTTCGCTACTTTTATGTACTTCGACCAATGATGATCTTCCTTAACCAAGAAAATCCTTTATACCCATATGAAAATCGTCGCGTGTTTTTTCTTTTTATTTTCTAGCTGGTGTTTGTATTCGATCGTTTTCCTTCTGTTCTGTTCGTTGGTTCTTGACTTGCTCTTTGACTTCACCTGTATTTATTGCTGTGGTTTGTGCCTTCGTTTGATTTCTGTTTGACTGCTTGGAGCTGGGTTCTTTCTGTTTAGCATGATCAGATCTTTGTTCTTATGGTTTGGATTTTATTTACCTGTTTTAGCTTGTTGATGGAGAACCTGGTGCACTCATGTGGACTAAATGTGTTTGTTATTAATTGGTTTTCTACATTTGAGTAGCAATTTGTTAACCTAGATTTTGAAATGTAATGAAACAGATTAGCTAACCAAGCCTCAGGGTCAGAGTTTAGAATGAAACCTAATTCAAAGATATCTATATGGGAGGGGAATTGATTTTTATGCCTTTTCTGTTTCTATCAAGTCCTGAATATCTAAGCACTAATTTGAGAAACCCTTCTACATGTTTCTATGTCAATTTCATATGTCTTTCCCATTTCAAAGTGGACTCAAAACCGACTTAACAAGCACATCTTCCTGACATTGCTACCTCTTTGAAAAGAGAGAAAAAAAAAAAGAAGGGTTAGGCTATGTATTAAAGTTGTGTATTTGTAGCTTACTTGTTTTAATAGACATGGATGATCATTAATGAGTTGAAGTACCGTATAATAGACATTGATGATCGTTAACTCACTTTGCCCTCGTTTGATGCTTGGACGGTCAGTGTCTTTGTTGTTATCTGAATGCTTGGGTTTTAATAGACATGGTGGATGATATCGATCGTTGAATGCTGTCTCGGTATTGTGTTTTCTAAAGTTATACGTCAAGTAATTTTATTGTAGTAAATACTGAAGAATGTTTACAGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGGTAACGTATTCCTATTTGGCTATTGCCTTGTTTTTTCTTCTAATGCAATGTGCTTCAAGCATTCAATTTGGACCTTTCTTGTTGCAAGAAATGAATCAAATCGACATGAGATACAAGCCTTAAACCTTAAAAGAAATCCCAGCTGTTTGGTCGGAAAGCATGAGTCGTTGGTTTGTGTTTTAGAAAGTCGTCTTCAGTTCATCATAGTTTGTTCGTTAATGGAACATGGAGTTGATACTTTTTGATTGAGTATTACTTAGACGTAGTGATGTTAAGTTCTAGCATGTCAACCACTTTGGACTTTAAGATTTAATATTATATGAATTACTGATGGAGGAATGTTAGACGATTGGCTCGTGAGAATAGTTAAAACACGCGGATAGTTTAAATTTAAAACATTCTAACATATGAAAGTACATTTAGCAAGAAGCCTGTATGATGAACCCATGAAATCATTTCAAAATTTGAGTCCTAGAATGAATGAGGGTTCTTCTATGAATCATTTACTCCCTGTTTTGCTTTTTACTCACAAATTCTTCGACTTATTTGCAGCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGAAATATAGTATGGATGTGGACATTCTTTTCTTATATTTAAATTTAAAGTTTTAGCTTCCAGCATTGAACTGTCTATCAGTGTCATCATATCATAATATTGTGAAATTTCTATATGCAAAAGAAATACTTGATTTAAATGTTCTTTATTAAGAGGAAAGGAAATGCAGTTTGGACACGACACCCATTTTGCTTTATTCCTGTGGTGTTTACGGAACAGGTGTTGGGATATTATTATCAGTACAAAGAAGG

mRNA sequence

GATTCGTCAAAGGAAACGCGTATTTTAGAGGACAACCACGCATGTTGACAAAACGTTGAGTATAAACGACGCCGAATTGCACTTGCATCGCATTGGCTCCCTCGTCGCCATTTGCTTCAAATCGCCGTCACTTTCACCAAGATCTTCATCAACCATCTACGCAGTGGAAAGAACACAGCACCACCACCGACAAACCGACCCCTCATTGATCGTTATGGGTGTAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGAAATATAGTATGGATGTGGACATTCTTTTCTTATATTTAAATTTAAAGTTTTAGCTTCCAGCATTGAACTGTCTATCAGTGTCATCATATCATAATATTGTGAAATTTCTATATGCAAAAGAAATACTTGATTTAAATGTTCTTTATTAAGAGGAAAGGAAATGCAGTTTGGACACGACACCCATTTTGCTTTATTCCTGTGGTGTTTACGGAACAGGTGTTGGGATATTATTATCAGTACAAAGAAGG

Coding sequence (CDS)

ATGGGTGTAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGATGCATCTGA

Protein sequence

MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQPKRTPMSNEEIEAILLGGCI

Homology

[Close]

BLAST of CmaCh02G009290 vs. TrEMBL
Match: A0A0A0KMD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQA+KRIPRIKFPKRH + SGSTS+TP+S G DD V F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGCI 80
          KRTP+SNEEIEAILLGGCI
Sbjct: 61 KRTPLSNEEIEAILLGGCI 79

[Close]

BLAST of CmaCh02G009290 vs. TrEMBL
Match: A0A061G635_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016471 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-20
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQA++RIPRIKFP+RHPNPSGS  Q        D  L    + KA  T+GGKASLQP
Sbjct: 1  MGAAQAMRRIPRIKFPQRHPNPSGSGLQPQARTKPGDGDLTFFSSSKAPTTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGC 79
          KRTP+SNEEIEAILLGGC
Sbjct: 61 KRTPVSNEEIEAILLGGC 78

[Close]

BLAST of CmaCh02G009290 vs. TrEMBL
Match: A0A0D2U9J3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G254600 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGVAQA+KRIPRIKFP+RHP PS S  Q   +    D  L    + KA  T+GGKASLQP
Sbjct: 1  MGVAQAMKRIPRIKFPQRHPKPSDSGLQAQGASKTGDGDLTFFSSSKAPATVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGC 79
          KRTP+SNEEIEAILLGGC
Sbjct: 61 KRTPVSNEEIEAILLGGC 78

[Close]

BLAST of CmaCh02G009290 vs. TrEMBL
Match: I1JAD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G225400 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-19
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPS-GSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQ 60
          MG  QA+KRIPRIKFP+RHP PS GST +T  S    D  L    +  AS ++GGKASLQ
Sbjct: 1  MGAGQAMKRIPRIKFPQRHPKPSSGSTPETQASSSTTDVSLAFFSSSNASTSVGGKASLQ 60

Query: 61 PKRTPMSNEEIEAILLGGC 79
          PKRTP+S EEIEAILLGGC
Sbjct: 61 PKRTPVSKEEIEAILLGGC 79

[Close]

BLAST of CmaCh02G009290 vs. TrEMBL
Match: V7CPP7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G298100g PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-19
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNP--SGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASL 60
          MG AQALKRIPRIKFP RHPN   SGS S T  S    D  L    +  AS T+GGKASL
Sbjct: 1  MGGAQALKRIPRIKFPNRHPNSAASGSASTTQASSSASDANLSFFSSSNASATVGGKASL 60

Query: 61 QPKRTPMSNEEIEAILLGGC 79
          QPKRTP+S EEIEA+LLGGC
Sbjct: 61 QPKRTPVSKEEIEAVLLGGC 80

[Close]

BLAST of CmaCh02G009290 vs. TAIR10
Match: AT4G23885.1 (AT4G23885.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          M V   LKRIPRIKFP+RH NPS S  ++  +   D   LF S      KT GGKAS QP
Sbjct: 1  MNVVHGLKRIPRIKFPQRHINPSASEGKSQVANEAD--TLFFSNLNNIQKTTGGKASSQP 60

Query: 61 KRTPMSNEEIEAILLGGCI 80
          KRTP+SNEE+EAILLGGCI
Sbjct: 61 KRTPVSNEEMEAILLGGCI 77

[Close]

BLAST of CmaCh02G009290 vs. TAIR10
Match: AT5G24165.1 (AT5G24165.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 8.2e-14
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 7  LKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTI--GGKASLQPKRTP 66
          ++RIPRIKFP+RH   SGS     +  GV   V   S    A K    GGKASLQPKRTP
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTASSDVPAAPKNTADGGKASLQPKRTP 60

Query: 67 MSNEEIEAILLGGCI 80
          +S++EIE+I+LGGCI
Sbjct: 61 VSDKEIESIMLGGCI 75

[Close]

BLAST of CmaCh02G009290 vs. NCBI nr
Match: gi|659074109|ref|XP_008437426.1| (PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQA+KRIPRIKFPKRHP+ SGSTS+TP+S G DD + F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGCI 80
          KR P+SNEEIEAILLGGCI
Sbjct: 61 KRIPLSNEEIEAILLGGCI 79

[Close]

BLAST of CmaCh02G009290 vs. NCBI nr
Match: gi|449452210|ref|XP_004143853.1| (PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQA+KRIPRIKFPKRH + SGSTS+TP+S G DD V F SL + ASKT+GGKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGCI 80
          KRTP+SNEEIEAILLGGCI
Sbjct: 61 KRTPLSNEEIEAILLGGCI 79

[Close]

BLAST of CmaCh02G009290 vs. NCBI nr
Match: gi|590679259|ref|XP_007040530.1| (Uncharacterized protein TCM_016471 [Theobroma cacao])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-20
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG AQA++RIPRIKFP+RHPNPSGS  Q        D  L    + KA  T+GGKASLQP
Sbjct: 1  MGAAQAMRRIPRIKFPQRHPNPSGSGLQPQARTKPGDGDLTFFSSSKAPTTVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGC 79
          KRTP+SNEEIEAILLGGC
Sbjct: 61 KRTPVSNEEIEAILLGGC 78

[Close]

BLAST of CmaCh02G009290 vs. NCBI nr
Match: gi|823214058|ref|XP_012439777.1| (PREDICTED: uncharacterized protein LOC105765307 [Gossypium raimondii])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MGVAQA+KRIPRIKFP+RHP PS S  Q   +    D  L    + KA  T+GGKASLQP
Sbjct: 1  MGVAQAMKRIPRIKFPQRHPKPSDSGLQAQGASKTGDGDLTFFSSSKAPATVGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGGC 79
          KRTP+SNEEIEAILLGGC
Sbjct: 61 KRTPVSNEEIEAILLGGC 78

[Close]

BLAST of CmaCh02G009290 vs. NCBI nr
Match: gi|920680271|gb|KOM27145.1| (hypothetical protein LR48_Vigan401s005500 [Vigna angularis])

HSP 1 Score: 101.3 bits (251), Expect = 8.0e-19
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 1  MGVAQALKRIPRIKFPKRHPNPSGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQP 60
          MG   A+KRIPRIKFP+RHPNPSGS S+T       D  L    + KA  T+GGKASLQP
Sbjct: 1  MGAGHAMKRIPRIKFPQRHPNPSGSASETQALSSTTDGSLPSFTSSKAFITLGGKASLQP 60

Query: 61 KRTPMSNEEIEAILLGG 78
          KRTP+SNEEIEA+LLGG
Sbjct: 61 KRTPLSNEEIEAVLLGG 77

The following BLAST results are available for this feature:

BLAST of CmaCh02G009290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G009290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMD8_CUCSA	2.1e-26	78.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148700 PE=4 SV=1	[more]
A0A061G635_THECC	5.0e-20	66.67	Uncharacterized protein OS=Theobroma cacao GN=TCM_016471 PE=4 SV=1	[more]
A0A0D2U9J3_GOSRA	1.5e-19	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G254600 PE=4 SV=1	[more]
I1JAD8_SOYBN	5.6e-19	64.56	Uncharacterized protein OS=Glycine max GN=GLYMA_01G225400 PE=4 SV=1	[more]
V7CPP7_PHAVU	5.6e-19	66.25	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G298100g PE=4 SV=1	[more]

BLAST of CmaCh02G009290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23885.1	1.7e-19	60.76	unknown protein	[more]
AT5G24165.1	8.2e-14	54.67	unknown protein	[more]

BLAST of CmaCh02G009290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074109\|ref\|XP_008437426.1\|	1.4e-26	77.22	PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo]	[more]
gi\|449452210\|ref\|XP_004143853.1\|	3.0e-26	78.48	PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus]	[more]
gi\|590679259\|ref\|XP_007040530.1\|	7.2e-20	66.67	Uncharacterized protein TCM_016471 [Theobroma cacao]	[more]
gi\|823214058\|ref\|XP_012439777.1\|	2.1e-19	66.67	PREDICTED: uncharacterized protein LOC105765307 [Gossypium raimondii]	[more]
gi\|920680271\|gb\|KOM27145.1\|	8.0e-19	64.94	hypothetical protein LR48_Vigan401s005500 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009290.1	CmaCh02G009290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35751	FAMILY NOT NAMED	coord: 1..79 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G009290	Csa5G148700	Cucumber (Chinese Long) v2	cmacuB611
CmaCh02G009290	ClCG01G001670	Watermelon (Charleston Gray)	cmawcgB522
CmaCh02G009290	CmoCh02G009380	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G009290	CmoCh15G013690	Cucurbita moschata (Rifu)	cmacmoB580
CmaCh02G009290	Lsi09G001550	Bottle gourd (USVL1VR-Ls)	cmalsiB535
CmaCh02G009290	Cp4.1LG05g07860	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G009290	Cp4.1LG00g00580	Cucurbita pepo (Zucchini)	cmacpeB595
CmaCh02G009290	CsaV3_5G001830	Cucumber (Chinese Long) v3	cmacucB0734
CmaCh02G009290	Cla97C01G001700	Watermelon (97103) v2	cmawmbB605
CmaCh02G009290	Bhi12G000103	Wax gourd	cmawgoB0718
CmaCh02G009290	CsGy5G001710	Cucumber (Gy14) v2	cgybcmaB638
CmaCh02G009290	Carg21296	Silver-seed gourd	carcmaB0507
CmaCh02G009290	Carg08545	Silver-seed gourd	carcmaB0999

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G009290	CmaCh15G013000	Cucurbita maxima (Rimu)	cmacmaB309

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G009290	Cucumber (Gy14) v1	cgycmaB0834
CmaCh02G009290	Wild cucumber (PI 183967)	cmacpiB617
CmaCh02G009290	Melon (DHL92) v3.5.1	cmameB526
CmaCh02G009290	Watermelon (97103) v1	cmawmB571
CmaCh02G009290	Watermelon (97103) v1	cmawmB573
CmaCh02G009290	Melon (DHL92) v3.6.1	cmamedB604