CmoCh15G013690 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G013690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaCnng71730D protein
LocationCmo_Chr15 : 9339308 .. 9341774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTGCACCACCGCACTAGCTCCCACCGTCGCCATTTGCTTCAAATCGCCGTCGAAGATCTTCCTCCGCCACCTGCGCAGAGCGATCCTACAGAACATCGCCAAGAAAGCTACCATCACCGAGCAATATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATTAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCGCTTCCGTCTTCCCTTTTTTCTCGTTACTTTTGTTTATTTTGATCGATGATCTTCCTCAAACAAGGAAAATGATCTATACACATATGAAAATTGTCGTTCGTGTTTGTATTCGATCGTCTCTGTTTTTCCTTTCGTTGATTTTTGACTTGACCTGTAATTTACAGCTTTGATTCTGTTTTCCTGTGGTTTGTGCCATCGTTTGATTGCTTGTTTGCTTTTATGAACTGCTGTAGAGACTAAAGATTTTTGTTCTCTTTTCAATTTAATCGTTTAATCTTATGACTGCTGGCTTGTCTTTGATATTTCTACATTTGATTAGCATTTTGTTAACCTAGATTTTGAAATCTAATAACACAGATTAGTAACCCAAGCCTTACAGAGTTTAGAATGAAACTTGAATCAAAAAGTGGGGAGGAAGAATTTTGTGAGAGTTTCAATTTGACACATAATTTGTTTTCTTATTTGATGAGGTTTGTATGAGAGGGAAGTTGATTTCTATGCCTCTTGGAATGCTGAAATGTGTGAGATTATGAATCCTTCTATAAATTTATGTGCCTATTTCATTACCTTCTCTTTGAAAAGAATGAACAGAAGAAGGGATTGGCGATGTGTTAAAATTGTTCTGTTGATAATTTGATTTAATGGACACCAACCTGACATTGTTGGATGATTATTAACGTTGAGTTGTACACGTCGTATGTATCGATTGTCGAATTCTGTCTTCGTGATGTGTTTTCTGAAGAAAGTTTTACAGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCTCATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAGGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAAGAGATTGAAGCTATTTTGGTAATAGATTCTATTCCTATTTGGTGGCTGCTTGCTTGCTTGCTTTTATCATTGCTGATTGATCTATTGTTTCTTATAATGCAATGTGCTTCAAGCTTTCAGTTTGGACTTGTTGTAAGAAAATCACCATGAGATGCATACCTTAAACCTTAAAAAATATGATCTGGTCACGTTTGTACTTTAGTATGTGTATCGTTGTCTAAGTAATGACTAGCAAATCGAGTCCACAAATCATTCGTTTGTGATTAGCTTGTTAGAGTTTGTTCGTTCATGGAACAAGGAGTTGATGCATTTTCGTTGAGTATTATTGTAAAGCCCGAATAAAAGAGAGATACATGAATGAGCTGAGACCACATTTGAATTTGAATTTGAATGATCTTGAGGATATGATGCTTGAGAAAGACTTTAAAAGAATTGACGTGACTATCTATGCCTACAAGGTATTGGGAGAGAGTCCCACATCGGCTAATTAAGGGTCATAGGTTTATAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGGAAACCAAAAGTAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGAAGAGTCATAGTTCCTAACACAAGGTGCACCTTCTTTTTCAGTGGCTCAATTATAAAAACTTTACAGTCAAACATGCTTAGTTTGGAGCAATCCTATATTGGATAGTCTCTTAAAAAAAATTATACGAAGCATGTAAGTGAGGACTAGACGTGCTAAAATGACTCGTAGTGGTCTGTGAGAATAATCTTCACTCTTAAAAGCAACAAGTAGGTAATTTCATAATGTGGGAACACGGGGTGTTACGATTATGCATTTCACTTGGATGTAGCGATGTTAACTTCTAGCATGATGATGTACGTTTAGCGGCACGCCTATATACTCCATATCCATGAAATCATTTGAAATCTTGATTACTAGAATGGCTTTGGTTCTATGAATCAGAATCCATTATTCCCTGTGTTTGCTTTTGCTGGGATATTCTTACTCACAATTCTGCAACTTATTTGCAGCTGGGTGGCTGCGTCTGATGAGCCTTGAGAGTGGATAAAACTATGGTTCTGGTCAATTCCTTTCTCCTATTTCAAAAGTTAATAGTTTCCAGTTTTGAATAATACTATGGTTCTGAGATTTCTATATGTAAATTGGTTTAAATCTTTAATAAGAGGAAGCTCTATACTTCTCGATTGTATGGAACAAATGTTCTCGAGCTTGAAACTTCAATTTTGAATTTGTAGAAAGTCTTCATTTGAGCTTGTCGAAGGTCTTCGAGTTCTAGCTTATTGAGGGTGTTCGTCGTGGCTTGTAGTTTCTTAAGGTCATGTTTGTTTCATAC

mRNA sequence

CATTTTGCACCACCGCACTAGCTCCCACCGTCGCCATTTGCTTCAAATCGCCGTCGAAGATCTTCCTCCGCCACCTGCGCAGAGCGATCCTACAGAACATCGCCAAGAAAGCTACCATCACCGAGCAATATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATTAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCTCATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAGGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAAGAGATTGAAGCTATTTTGCTGGGTGGCTGCGTCTGATGAGCCTTGAGAGTGGATAAAACTATGGTTCTGGTCAATTCCTTTCTCCTATTTCAAAAGTTAATAGTTTCCAGTTTTGAATAATACTATGGTTCTGAGATTTCTATATGTAAATTGGTTTAAATCTTTAATAAGAGGAAGCTCTATACTTCTCGATTGTATGGAACAAATGTTCTCGAGCTTGAAACTTCAATTTTGAATTTGTAGAAAGTCTTCATTTGAGCTTGTCGAAGGTCTTCGAGTTCTAGCTTATTGAGGGTGTTCGTCGTGGCTTGTAGTTTCTTAAGGTCATGTTTGTTTCATAC

Coding sequence (CDS)

ATGGCTGGAGTCAAGGGCATCAAGAGAATCCCTCGCATTAAATTCCCTAAACGACATCCCAACCCCTCTGGTTCTTCTTCGCAAACTCCATCAAGCAGTGGAGTGGATAGTCAAAATTTCATCTCATCCTTGAGTGAAACTGCCTCCAAAACTGTTGATGGAAAGGCCTCCCTTCAGCCTAAAAGGACACCATTGTCCAATGAAGAGATTGAAGCTATTTTGCTGGGTGGCTGCGTCTGA
Homology
[Close]
BLAST of CmoCh15G013690 vs. TrEMBL
Match: A0A0A0KMD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRH + SGS+S+TPSS G D   F SSL + ASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KRTPLSNEEIEAILLGGC+
Sbjct: 61 KRTPLSNEEIEAILLGGCI 79

[Close]
BLAST of CmoCh15G013690 vs. TrEMBL
Match: V4SXE2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023430mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          MAG + +KRIPRIKFP+RHP  SGS+SQ+ + + VD  N+        S TV GKASLQP
Sbjct: 1  MAGTQALKRIPRIKFPQRHPKSSGSASQSQAGANVDPNNW-----SKVSTTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KR P SNEEIEAILLGGC+
Sbjct: 61 KRMPPSNEEIEAILLGGCI 74

[Close]
BLAST of CmoCh15G013690 vs. TrEMBL
Match: A0A067GAB1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036429mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          MAG + +KRIPRIKFP+RHP  SGS+SQ+ + + VD  N+        S TV GKASLQP
Sbjct: 1  MAGTQALKRIPRIKFPQRHPKSSGSASQSQAGANVDPNNW-----SKVSTTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KR P SNEEIEAILLGGC+
Sbjct: 61 KRIPPSNEEIEAILLGGCI 74

[Close]
BLAST of CmoCh15G013690 vs. TrEMBL
Match: V7CPP7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G298100g PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-16
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNP--SGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASL 60
          M G + +KRIPRIKFP RHPN   SGS+S T +SS     N     S  AS TV GKASL
Sbjct: 1  MGGAQALKRIPRIKFPNRHPNSAASGSASTTQASSSASDANLSFFSSSNASATVGGKASL 60

Query: 61 QPKRTPLSNEEIEAILLGGC 79
          QPKRTP+S EEIEA+LLGGC
Sbjct: 61 QPKRTPVSKEEIEAVLLGGC 80

[Close]
BLAST of CmoCh15G013690 vs. TrEMBL
Match: I3TAD6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-15
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPS-SSGVDSQNFISSLSETASKTVDGKASLQ 60
          M G   +KRIPRIKFP RH   SGS+S+ P+ SS  D+ +   S SE AS T+ GKASLQ
Sbjct: 1  MGGAHALKRIPRIKFPNRHSKSSGSASEAPALSSASDASSSFFSSSE-ASTTLGGKASLQ 60

Query: 61 PKRTPLSNEEIEAILLGGC 79
          PKRTP+SNEEIEA+LLGGC
Sbjct: 61 PKRTPVSNEEIEAVLLGGC 78

[Close]
BLAST of CmoCh15G013690 vs. TAIR10
Match: AT4G23885.1 (AT4G23885.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-16
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 4  VKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQPKRT 63
          V G+KRIPRIKFP+RH NPS S  ++  ++  D+  F S+L+    KT  GKAS QPKRT
Sbjct: 4  VHGLKRIPRIKFPQRHINPSASEGKSQVANEADTL-FFSNLNNI-QKTTGGKASSQPKRT 63

Query: 64 PLSNEEIEAILLGGCV 80
          P+SNEE+EAILLGGC+
Sbjct: 64 PVSNEEMEAILLGGCI 77

[Close]
BLAST of CmoCh15G013690 vs. TAIR10
Match: AT5G24165.1 (AT5G24165.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 9.1e-13
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 7  IKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASK-TVDG-KASLQPKRTP 66
          ++RIPRIKFP+RH   SGS     S SGV      SS    A K T DG KASLQPKRTP
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTASSDVPAAPKNTADGGKASLQPKRTP 60

Query: 67 LSNEEIEAILLGGCV 80
          +S++EIE+I+LGGC+
Sbjct: 61 VSDKEIESIMLGGCI 75

[Close]
BLAST of CmoCh15G013690 vs. NCBI nr
Match: gi|659074109|ref|XP_008437426.1| (PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRHP+ SGS+S+TPSS+G D   F SSL + ASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KR PLSNEEIEAILLGGC+
Sbjct: 61 KRIPLSNEEIEAILLGGCI 79

[Close]
BLAST of CmoCh15G013690 vs. NCBI nr
Match: gi|449452210|ref|XP_004143853.1| (PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          M G + IKRIPRIKFPKRH + SGS+S+TPSS G D   F SSL + ASKTV GKASLQP
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KRTPLSNEEIEAILLGGC+
Sbjct: 61 KRTPLSNEEIEAILLGGCI 79

[Close]
BLAST of CmoCh15G013690 vs. NCBI nr
Match: gi|985445877|ref|XP_006476381.2| (PREDICTED: uncharacterized protein LOC102609005 [Citrus sinensis])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          MAG + +KRIPRIKFP+RHP  SGS+SQ+ + + VD  N+        S TV GKASLQP
Sbjct: 1  MAGTQALKRIPRIKFPQRHPKSSGSASQSQAGANVDPNNW-----SKVSTTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KR P SNEEIEAILLGGC+
Sbjct: 61 KRIPPSNEEIEAILLGGCI 74

[Close]
BLAST of CmoCh15G013690 vs. NCBI nr
Match: gi|567893710|ref|XP_006439343.1| (hypothetical protein CICLE_v10023430mg [Citrus clementina])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          MAG + +KRIPRIKFP+RHP  SGS+SQ+ + + VD  N+        S TV GKASLQP
Sbjct: 1  MAGTQALKRIPRIKFPQRHPKSSGSASQSQAGANVDPNNW-----SKVSTTVGGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGCV 80
          KR P SNEEIEAILLGGC+
Sbjct: 61 KRMPPSNEEIEAILLGGCI 74

[Close]
BLAST of CmoCh15G013690 vs. NCBI nr
Match: gi|729295886|ref|XP_010541724.1| (PREDICTED: uncharacterized protein LOC104815090 isoform X3 [Tarenaya hassleriana])

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-16
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1 

Query: 1  MAGVKGIKRIPRIKFPKRHPNPSGSSSQTPSSSGVDSQNFISSLSETASKTVDGKASLQP 60
          M GV+ +KR+PRIKFP+RHP PSGS  +  + S  +  +     +  ASK V GKASLQP
Sbjct: 1  MNGVQAMKRVPRIKFPQRHPKPSGSEGKNQAVSAANEADTFFFSNLNASKIVSGKASLQP 60

Query: 61 KRTPLSNEEIEAILLGGC 79
          KRTP+SNEEIEAILLGGC
Sbjct: 61 KRTPVSNEEIEAILLGGC 78

The following BLAST results are available for this feature:
BLAST of CmoCh15G013690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G013690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMD8_CUCSA1.9e-2274.68Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148700 PE=4 SV=1[more]
V4SXE2_9ROSI2.0e-1662.03Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023430mg PE=4 SV=1[more]
A0A067GAB1_CITSI2.0e-1662.03Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036429mg PE=4 SV=1[more]
V7CPP7_PHAVU4.4e-1662.50Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G298100g PE=4 SV=1[more]
I3TAD6_LOTJA1.7e-1563.29Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmoCh15G013690 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23885.11.8e-1659.21 unknown protein[more]
AT5G24165.19.1e-1357.33 unknown protein[more]
BLAST of CmoCh15G013690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074109|ref|XP_008437426.1|5.4e-2374.68PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo][more]
gi|449452210|ref|XP_004143853.1|2.7e-2274.68PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus][more]
gi|985445877|ref|XP_006476381.2|2.8e-1662.03PREDICTED: uncharacterized protein LOC102609005 [Citrus sinensis][more]
gi|567893710|ref|XP_006439343.1|2.8e-1662.03hypothetical protein CICLE_v10023430mg [Citrus clementina][more]
gi|729295886|ref|XP_010541724.1|6.3e-1660.26PREDICTED: uncharacterized protein LOC104815090 isoform X3 [Tarenaya hassleriana... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G013690.1CmoCh15G013690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35751FAMILY NOT NAMEDcoord: 1..79
score: 3.9
NoneNo IPR availablePANTHERPTHR35751:SF1SUBFAMILY NOT NAMEDcoord: 1..79
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G013690CmaCh15G013000Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G013690CmaCh02G009290Cucurbita maxima (Rimu)cmacmoB580
CmoCh15G013690Csa5G148700Cucumber (Chinese Long) v2cmocuB286
CmoCh15G013690ClCG01G001670Watermelon (Charleston Gray)cmowcgB247
CmoCh15G013690Cp4.1LG00g00580Cucurbita pepo (Zucchini)cmocpeB262
CmoCh15G013690Cp4.1LG05g07860Cucurbita pepo (Zucchini)cmocpeB295
CmoCh15G013690Bhi12G000103Wax gourdcmowgoB0368
CmoCh15G013690Carg21296Silver-seed gourdcarcmoB0488
CmoCh15G013690Carg08545Silver-seed gourdcarcmoB0965
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G013690CmoCh02G009380Cucurbita moschata (Rifu)cmocmoB247
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G013690Cucumber (Gy14) v1cgycmoB0824
CmoCh15G013690Wild cucumber (PI 183967)cmocpiB295
CmoCh15G013690Melon (DHL92) v3.5.1cmomeB238
CmoCh15G013690Watermelon (97103) v1cmowmB267
CmoCh15G013690Bottle gourd (USVL1VR-Ls)cmolsiB255
CmoCh15G013690Cucumber (Gy14) v2cgybcmoB583
CmoCh15G013690Melon (DHL92) v3.6.1cmomedB270
CmoCh15G013690Cucumber (Chinese Long) v3cmocucB0347
CmoCh15G013690Watermelon (97103) v2cmowmbB270