Cla97C01G001700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G001700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Coatomer subunit gamma-1
Location	Cla97Chr01 : 1558522 .. 1558896 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTGCCTTTGTGATGTGTTTTCTAAAGTTATCTGTCAGTCATTTTATAGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGGTAATGGAACCTATTCCTATTTGGTGGTTGCTTGCTTTAATAATTGCTGATCGATCTGTTGTTTCTTATAATGCAATGTGCTTCAAGCATTCAATTTGGACTCTTCTTATTGCTAGAGAAGCAAACAAATCGCCATGA

mRNA sequence

ATGAATTCTGCCTTTGTGATGTGTTTTCTAAAGTTATCTGTCAGTCATTTTATAGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGGTAATGGAACCTATTCCTATTTGGTGGTTGCTTGCTTTAATAATTGCTGATCGATCTGTTGTTTCTTATAATGCAATGTGCTTCAAGCATTCAATTTGGACTCTTCTTATTGCTAGAGAAGCAAACAAATCGCCATGA

Coding sequence (CDS)

ATGAATTCTGCCTTTGTGATGTGTTTTCTAAAGTTATCTGTCAGTCATTTTATAGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGGTAATGGAACCTATTCCTATTTGGTGGTTGCTTGCTTTAATAATTGCTGATCGATCTGTTGTTTCTTATAATGCAATGTGCTTCAAGCATTCAATTTGGACTCTTCTTATTGCTAGAGAAGCAAACAAATCGCCATGA

Protein sequence

MNSAFVMCFLKLSVSHFIEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILVMEPIPIWWLLALIIADRSVVSYNAMCFKHSIWTLLIAREANKSP

Homology

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BLAST of Cla97C01G001700 vs. NCBI nr
Match: XP_004143853.1 (PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus] >KGN49999.1 hypothetical protein Csa_5G148700 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-13
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 26 SFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          S +GSTSKTPS+  GDD +FFSS E+ ASKTVGGKASLQPKRTPLSNEEIEAIL+
Sbjct: 21 SSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQPKRTPLSNEEIEAILL 75

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BLAST of Cla97C01G001700 vs. NCBI nr
Match: XP_008437426.1 (PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 26 SFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          S +GSTSKTPS++ GDD IFFSS E+ ASKTVGGKASLQPKR PLSNEEIEAIL+
Sbjct: 21 SSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQPKRIPLSNEEIEAILL 75

[Close]

BLAST of Cla97C01G001700 vs. NCBI nr
Match: XP_022958002.1 (uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 uncharacterized protein LOC111491585 [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 28 TGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          +GSTS+TP++   DDQ+ F S  + ASKT+GGKASLQPKRTP+SNEEIEAIL+
Sbjct: 23 SGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQPKRTPMSNEEIEAILL 75

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BLAST of Cla97C01G001700 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 28 TGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          +GSTS+TP++   DDQ+ F S  + ASKT+GGKASLQPKRTP+SNEEIEAIL+
Sbjct: 23 SGSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQPKRTPMSNEEIEAILL 75

[Close]

BLAST of Cla97C01G001700 vs. NCBI nr
Match: XP_022156457.1 (uncharacterized protein LOC111023342 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 28 TGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          +GSTS+TPS    DDQ+ FS+      KTVGGKASLQPKRTP+SNEEIEA+L+
Sbjct: 23 SGSTSQTPSNLGVDDQVIFSTG--NVLKTVGGKASLQPKRTPMSNEEIEAVLL 73

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BLAST of Cla97C01G001700 vs. TrEMBL
Match: tr|A0A0A0KMD8|A0A0A0KMD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 26 SFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          S +GSTSKTPS+  GDD +FFSS E+ ASKTVGGKASLQPKRTPLSNEEIEAIL+
Sbjct: 21 SSSGSTSKTPSSHGGDDHVFFSSLEKDASKTVGGKASLQPKRTPLSNEEIEAILL 75

[Close]

BLAST of Cla97C01G001700 vs. TrEMBL
Match: tr|A0A1S3AUJ6|A0A1S3AUJ6_CUCME (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 26 SFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          S +GSTSKTPS++ GDD IFFSS E+ ASKTVGGKASLQPKR PLSNEEIEAIL+
Sbjct: 21 SSSGSTSKTPSSNGGDDHIFFSSLEKDASKTVGGKASLQPKRIPLSNEEIEAILL 75

[Close]

BLAST of Cla97C01G001700 vs. TrEMBL
Match: tr|A0A2P5RCY8|A0A2P5RCY8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD18360 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.4e-06
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 26 SFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILVMEPIP 85
          S +G  ++  S +   D  FFSSS+  A  TVGGKASLQPKRTP+SNEEIEAIL++  + 
Sbjct: 23 SDSGLQAQGASKTGDGDLTFFSSSK--APATVGGKASLQPKRTPVSNEEIEAILMLTALY 82

Query: 86 IWWLLALIIADR 98
          +   LAL+I D+
Sbjct: 83 VLGSLALLIRDQ 92

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BLAST of Cla97C01G001700 vs. TrEMBL
Match: tr|A0A2C9W9S9|A0A2C9W9S9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G009700 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 24 EESFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          + S + S S+ PST+   D  FFS+S+  A  TVGGKASLQPKRTP SNEEIEAIL+
Sbjct: 21 KSSGSASPSQEPSTTGHADLTFFSNSK--APSTVGGKASLQPKRTPPSNEEIEAILL 75

[Close]

BLAST of Cla97C01G001700 vs. TrEMBL
Match: tr|B9RCT2|B9RCT2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1692080 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-05
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 28 TGSTSKTPSTSRGDDQI-FFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          +GS SK+  ++ G+  + FFSSS+  AS TVGGKASLQPKRTP+SN+EIEAIL+
Sbjct: 25 SGSASKSHESAVGNGNLPFFSSSK--ASMTVGGKASLQPKRTPVSNDEIEAILL 76

[Close]

BLAST of Cla97C01G001700 vs. TAIR10
Match: AT4G23885.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-06
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 35 PSTSRGDDQI------FFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILV 81
          PS S G  Q+       F S+     KT GGKAS QPKRTP+SNEE+EAIL+
Sbjct: 22 PSASEGKSQVANEADTLFFSNLNNIQKTTGGKASSQPKRTPVSNEEMEAILL 73

The following BLAST results are available for this feature:

BLAST of Cla97C01G001700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143853.1	5.3e-13	80.00	PREDICTED: uncharacterized protein LOC101205349 [Cucumis sativus] >KGN49999.1 hy...	[more]
XP_008437426.1	1.2e-12	80.00	PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo]	[more]
XP_022958002.1	3.5e-09	67.92	uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 unchar...	[more]
XP_023534508.1	3.5e-09	67.92	uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo]	[more]
XP_022156457.1	2.5e-07	66.04	uncharacterized protein LOC111023342 [Momordica charantia]	[more]

BLAST of Cla97C01G001700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMD8\|A0A0A0KMD8_CUCSA	3.5e-13	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1	[more]
tr\|A0A1S3AUJ6\|A0A1S3AUJ6_CUCME	7.8e-13	80.00	uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=...	[more]
tr\|A0A2P5RCY8\|A0A2P5RCY8_GOSBA	5.4e-06	52.78	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD18360 PE=4 SV...	[more]
tr\|A0A2C9W9S9\|A0A2C9W9S9_MANES	2.7e-05	61.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G009700 PE=4 SV=...	[more]
tr\|B9RCT2\|B9RCT2_RICCO	4.6e-05	62.96	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1692080 PE=4 SV=1	[more]

BLAST of Cla97C01G001700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G001700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23885.1	2.6e-06	53.85	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G001700.1	Cla97C01G001700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G001700	Csa5G148700	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G001700	ClCG01G001670	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G001700	CmaCh02G009290	Cucurbita maxima (Rimu)	cmawmbB605
Cla97C01G001700	CmoCh02G009380	Cucurbita moschata (Rifu)	cmowmbB581
Cla97C01G001700	Lsi09G001550	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G001700	CsGy5G001710	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G001700	Carg08545	Silver-seed gourd	carwmbB0739
Cla97C01G001700	CsaV3_5G001830	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G001700	Bhi12G000103	Wax gourd	wgowmbB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G001700	Silver-seed gourd	carwmbB0376
Cla97C01G001700	Cucumber (Gy14) v1	cgywmbB520
Cla97C01G001700	Cucurbita maxima (Rimu)	cmawmbB288
Cla97C01G001700	Cucurbita moschata (Rifu)	cmowmbB270
Cla97C01G001700	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G001700	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G001700	Melon (DHL92) v3.5.1	mewmbB008
Cla97C01G001700	Watermelon (97103) v1	wmwmbB235