CmaCh02G006200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G006200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2, putative
Location	Cma_Chr02 : 3744849 .. 3745328 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAACTACATGGCTACTATCGACATCAATTCACAAATTGGAAGCTGCATGCCACTTTCTGCAATGCGCATCGGTACAATTATCCACAACCTTGAGATAAATCCAGGTCAAGGTGGGAAGCTCGTCCGATCAGCAGGAACATGTGCAAAGATATTGAAAGAGCCAACGTCAAGATACTGCTTGGTGAGACTCCCTTCCGGTACAGAGAAGTTGATCGACTCAAGGTGCAGGGCTACCATCGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAAGCAGGACAAAGCCGGTGGTTGGGTCGACGTCCAGTGGTTCGAGGAGTGGCGATGAACCCAGTTGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGAAAGGGGTCTCGCACACCCTGGGGAAAGCCAACCAAGTCAGGCTACAAGACTGGAACTCTCAAGCGCAAAAAGTAG

mRNA sequence

ATGTCGAACTACATGGCTACTATCGACATCAATTCACAAATTGGAAGCTGCATGCCACTTTCTGCAATGCGCATCGGTACAATTATCCACAACCTTGAGATAAATCCAGGTCAAGGTGGGAAGCTCGTCCGATCAGCAGGAACATGTGCAAAGATATTGAAAGAGCCAACGTCAAGATACTGCTTGGTGAGACTCCCTTCCGGTACAGAGAAGTTGATCGACTCAAGGTGCAGGGCTACCATCGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAAGCAGGACAAAGCCGGTGGTTGGGTCGACGTCCAGTGGTTCGAGGAGTGGCGATGAACCCAGTTGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGAAAGGGGTCTCGCACACCCTGGGGAAAGCCAACCAAGTCAGGCTACAAGACTGGAACTCTCAAGCGCAAAAAGTAG

Coding sequence (CDS)

ATGTCGAACTACATGGCTACTATCGACATCAATTCACAAATTGGAAGCTGCATGCCACTTTCTGCAATGCGCATCGGTACAATTATCCACAACCTTGAGATAAATCCAGGTCAAGGTGGGAAGCTCGTCCGATCAGCAGGAACATGTGCAAAGATATTGAAAGAGCCAACGTCAAGATACTGCTTGGTGAGACTCCCTTCCGGTACAGAGAAGTTGATCGACTCAAGGTGCAGGGCTACCATCGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAAGCAGGACAAAGCCGGTGGTTGGGTCGACGTCCAGTGGTTCGAGGAGTGGCGATGAACCCAGTTGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGAAAGGGGTCTCGCACACCCTGGGGAAAGCCAACCAAGTCAGGCTACAAGACTGGAACTCTCAAGCGCAAAAAGTAG

Protein sequence

MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK

Homology

[Close]

BLAST of CmaCh02G006200 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 101/146 (69.18%), Postives = 125/146 (85.62%), Query Frame = 1


Query: 8   IDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPS 67
           +D+NS++G+ +PL+ +R+GT +H++E +PGQG KL R+AGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 68  GTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 127
           G EKLIDSRCRATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 128 SKSSGSFGKGSRTPWGKPTKSGYKTG 154
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of CmaCh02G006200 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 101/146 (69.18%), Postives = 125/146 (85.62%), Query Frame = 1


Query: 8   IDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPS 67
           +D+NS++G+ +PL+ +R+GT +H++E +PGQG KL R+AGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 68  GTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 127
           G EKLIDSRCRATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 128 SKSSGSFGKGSRTPWGKPTKSGYKTG 154
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of CmaCh02G006200 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 101/146 (69.18%), Postives = 125/146 (85.62%), Query Frame = 1


Query: 8   IDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPS 67
           +D+NS++G+ +PL+ +R+GT +H++E +PGQG KL R+AGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 68  GTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 127
           G EKLIDSRCRATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 128 SKSSGSFGKGSRTPWGKPTKSGYKTG 154
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of CmaCh02G006200 vs. Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-48
Identity = 96/146 (65.75%), Postives = 116/146 (79.45%), Query Frame = 1


Query: 14  IGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKIL-KEPTSRYCLVRLPSGTEKL 73
           +G+C+PL+ + IGT +HN+E NPGQG KL R+AGT A+I+ K   +  C+VRLPSG +KL
Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKL 418

Query: 74  IDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSG 133
           IDSRCRATIG VSN +HG RK  KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEGR+K   
Sbjct: 419 IDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG-- 478

Query: 134 SFGKGSRTPWGKPTKSGYKTGTLKRK 159
             G+ S +PWGKPTK G+KT   KR+
Sbjct: 479 --GRPSVSPWGKPTKGGFKTVVRKRR 500

[Close]

BLAST of CmaCh02G006200 vs. Swiss-Prot
Match: RL2_BACAA (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-38
Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 1


Query: 5   MATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVR 64
           M+  + + +IG+ +PL  + +GT++HN+E+ PG+GG+LVRSAGT A++L +   +Y LVR
Sbjct: 117 MSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVR 176

Query: 65  LPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGG 124
           L SG  +L+ S CRAT+GQV N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGG
Sbjct: 177 LTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGG 236

Query: 125 EGRSKSSGSFGKGSRTPWGKPTKSGYKT 153
           EGRS       K   +PWGKPT  G+KT
Sbjct: 237 EGRSPIG---RKSPMSPWGKPT-LGFKT 259

[Close]

BLAST of CmaCh02G006200 vs. TrEMBL
Match: A0A059AZX8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01868 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.1e-73
Identity = 134/159 (84.28%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M + M  +D+NSQIGSCMPL+AMRIGT+IHN+E+NPGQGGKLVR+AGTCAKILKEPTSRY
Sbjct: 1   MMDQMFHLDVNSQIGSCMPLAAMRIGTMIHNIEVNPGQGGKLVRAAGTCAKILKEPTSRY 60

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            +VRLPSG EKLID+RCRATIGQVSNPSHG+RKLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 61  VMVRLPSGAEKLIDTRCRATIGQVSNPSHGSRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKS G++G+GS TPWGKP KSGYKTG LKR+K
Sbjct: 121 HGGGEGRSKSGGNYGRGSLTPWGKPCKSGYKTGPLKRRK 159

[Close]

BLAST of CmaCh02G006200 vs. TrEMBL
Match: A0A059B0K7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01868 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.1e-73
Identity = 134/159 (84.28%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M + M  +D+NSQIGSCMPL+AMRIGT+IHN+E+NPGQGGKLVR+AGTCAKILKEPTSRY
Sbjct: 45  MMDQMFHLDVNSQIGSCMPLAAMRIGTMIHNIEVNPGQGGKLVRAAGTCAKILKEPTSRY 104

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            +VRLPSG EKLID+RCRATIGQVSNPSHG+RKLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 105 VMVRLPSGAEKLIDTRCRATIGQVSNPSHGSRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 164

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKS G++G+GS TPWGKP KSGYKTG LKR+K
Sbjct: 165 HGGGEGRSKSGGNYGRGSLTPWGKPCKSGYKTGPLKRRK 203

[Close]

BLAST of CmaCh02G006200 vs. TrEMBL
Match: A0A0G2YF57_9ROSI (Ribosomal protein L2 OS=Hypseocharis bilobata GN=rpl2 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-72
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M N M  +DINSQIGSCMPLSAMRIGT+IHN+E+ PGQGGKLVR+AGTCAKI+KEP SRY
Sbjct: 72  MMNQMLYLDINSQIGSCMPLSAMRIGTMIHNIELRPGQGGKLVRAAGTCAKIMKEPKSRY 131

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            LV++PSG EKLID+RC+ATIGQVSNPSHGT+KLRKAG SRWLGRRPVVRGVAMNPVDHP
Sbjct: 132 VLVKMPSGAEKLIDTRCKATIGQVSNPSHGTKKLRKAGHSRWLGRRPVVRGVAMNPVDHP 191

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKSSGS GK SRTPWGKPTKSGYKTG LKR+K
Sbjct: 192 HGGGEGRSKSSGSHGKCSRTPWGKPTKSGYKTGPLKRRK 230

[Close]

BLAST of CmaCh02G006200 vs. TrEMBL
Match: A0A0G2YFD1_9ROSI (Ribosomal protein L2 OS=Monsonia emarginata GN=rpl2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.7e-72
Identity = 136/159 (85.53%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M N  A +DINSQIGSCMPLSAMRIGT+IHN+E+ PGQGGKLVRSAGTCAKILKEP SRY
Sbjct: 76  MMNDTAHLDINSQIGSCMPLSAMRIGTMIHNIEMRPGQGGKLVRSAGTCAKILKEPKSRY 135

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            LV++PSGTEKLID+RCRA+IGQVSNPSHGT+KLRKAG SRWLGRRPVVRGVAMNPVDHP
Sbjct: 136 VLVKMPSGTEKLIDTRCRASIGQVSNPSHGTKKLRKAGHSRWLGRRPVVRGVAMNPVDHP 195

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKSSGS G  SRTPWGKPTKSGYKTG L+R+K
Sbjct: 196 HGGGEGRSKSSGSHGHCSRTPWGKPTKSGYKTGPLRRRK 234

[Close]

BLAST of CmaCh02G006200 vs. TrEMBL
Match: I3SGD7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-71
Identity = 132/151 (87.42%), Postives = 143/151 (94.70%), Query Frame = 1


Query: 9   DINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPSG 68
           DINSQIGSCMPLS+MRIGTIIHN+E+NPGQGGKLVR+AGTCAKILKEPTS YCL++LPSG
Sbjct: 42  DINSQIGSCMPLSSMRIGTIIHNIEMNPGQGGKLVRAAGTCAKILKEPTSAYCLIQLPSG 101

Query: 69  TEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 128
            +KLIDSRCRAT+G VSNP+HG RKLRKAG SRWLGRRPVVRGVAMNPVDHPHGGGEGRS
Sbjct: 102 VKKLIDSRCRATVGVVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 161

Query: 129 KSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           KSSG +GKGSRTPWGKPTK G+KTG LKRKK
Sbjct: 162 KSSGRWGKGSRTPWGKPTKGGFKTGPLKRKK 192

[Close]

BLAST of CmaCh02G006200 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 228.0 bits (580), Expect = 4.0e-60
Identity = 112/159 (70.44%), Postives = 130/159 (81.76%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M   M  +DINS IGS MPL  MRIGTIIHN+E+NPGQG K+VR+AGT AKILKEP    
Sbjct: 46  MKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGK 105

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
           CL++LPSG  K I+++CRATIG VSNPSHGT+KL KAGQSRWLG RP VRGVAMNP DHP
Sbjct: 106 CLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHP 165

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEG+SKSSGS G+ S +PWGKP K GYK+ ++K+KK
Sbjct: 166 HGGGEGKSKSSGSRGRTSVSPWGKPCKGGYKSASVKKKK 204

[Close]

BLAST of CmaCh02G006200 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-31
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 1


Query: 9   DINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPSG 68
           ++  ++G+ +PL+ M +GT IHN+EI  G+GG+L R+AG  AK++ +   +   ++LPSG
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKE-GKSATLKLPSG 178

Query: 69  TEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 128
             +LI   C AT+GQV N     + L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+
Sbjct: 179 EVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 238

Query: 129 KSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
                  K   TPWG P        T KRKK
Sbjct: 239 PIG---RKKPVTPWGYPALG---RRTRKRKK 262

[Close]

BLAST of CmaCh02G006200 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-31
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 1


Query: 9   DINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRYCLVRLPSG 68
           ++  ++G+ +PL+ M +GT IHN+EI  G+GG+L R+AG  AK++ +   +   ++LPSG
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKE-GKSATLKLPSG 178

Query: 69  TEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 128
             +LI   C AT+GQV N     + L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+
Sbjct: 179 EVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 238

Query: 129 KSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
                  K   TPWG P        T KRKK
Sbjct: 239 PIG---RKKPVTPWGYPALG---RRTRKRKK 262

[Close]

BLAST of CmaCh02G006200 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 11  NSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKE-PTSRYCLVRLPSGT 70
           N  +G+ +PL ++  G +I N+E++ G  G L R++G  A ++   P S    V+LPSG+
Sbjct: 96  NLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGS 155

Query: 71  EKLIDSRCRATIGQVSNPSHGTRKLRKAGQS--RWLGRR---PVVRGVAMNPVDHPHGGG 125
           +K++ S CRA IGQV+      + L KAG +  ++  +R   PVVRGVAMNPV+HPHGGG
Sbjct: 156 KKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGG 215

[Close]

BLAST of CmaCh02G006200 vs. TAIR10
Match: AT2G18020.1 (AT2G18020.1 Ribosomal protein L2 family)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1


Query: 14  IGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKE-PTSRYCLVRLPSGTEKL 73
           +G+ +PL ++  G ++ N+E + G  G L R++G  A ++   P S    ++LPSG++K+
Sbjct: 98  VGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKI 157

Query: 74  IDSRCRATIGQVSNPSHGTRKLRKAGQS--RWLGRR---PVVRGVAMNPVDHPHGGG 125
           + S CRA IGQV+      + + KAG +  ++  +R   P VRGVAMNPV+HPHGGG
Sbjct: 158 VPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGG 214

[Close]

BLAST of CmaCh02G006200 vs. NCBI nr
Match: gi|629093210|gb|KCW59205.1| (hypothetical protein EUGRSUZ_H01868 [Eucalyptus grandis])

HSP 1 Score: 281.6 bits (719), Expect = 8.7e-73
Identity = 134/159 (84.28%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M + M  +D+NSQIGSCMPL+AMRIGT+IHN+E+NPGQGGKLVR+AGTCAKILKEPTSRY
Sbjct: 45  MMDQMFHLDVNSQIGSCMPLAAMRIGTMIHNIEVNPGQGGKLVRAAGTCAKILKEPTSRY 104

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            +VRLPSG EKLID+RCRATIGQVSNPSHG+RKLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 105 VMVRLPSGAEKLIDTRCRATIGQVSNPSHGSRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 164

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKS G++G+GS TPWGKP KSGYKTG LKR+K
Sbjct: 165 HGGGEGRSKSGGNYGRGSLTPWGKPCKSGYKTGPLKRRK 203

[Close]

BLAST of CmaCh02G006200 vs. NCBI nr
Match: gi|702454074|ref|XP_010026376.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 281.6 bits (719), Expect = 8.7e-73
Identity = 134/159 (84.28%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M + M  +D+NSQIGSCMPL+AMRIGT+IHN+E+NPGQGGKLVR+AGTCAKILKEPTSRY
Sbjct: 117 MMDQMFHLDVNSQIGSCMPLAAMRIGTMIHNIEVNPGQGGKLVRAAGTCAKILKEPTSRY 176

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            +VRLPSG EKLID+RCRATIGQVSNPSHG+RKLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 177 VMVRLPSGAEKLIDTRCRATIGQVSNPSHGSRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 236

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKS G++G+GS TPWGKP KSGYKTG LKR+K
Sbjct: 237 HGGGEGRSKSGGNYGRGSLTPWGKPCKSGYKTGPLKRRK 275

[Close]

BLAST of CmaCh02G006200 vs. NCBI nr
Match: gi|629093211|gb|KCW59206.1| (hypothetical protein EUGRSUZ_H01868 [Eucalyptus grandis])

HSP 1 Score: 281.6 bits (719), Expect = 8.7e-73
Identity = 134/159 (84.28%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M + M  +D+NSQIGSCMPL+AMRIGT+IHN+E+NPGQGGKLVR+AGTCAKILKEPTSRY
Sbjct: 1   MMDQMFHLDVNSQIGSCMPLAAMRIGTMIHNIEVNPGQGGKLVRAAGTCAKILKEPTSRY 60

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
            +VRLPSG EKLID+RCRATIGQVSNPSHG+RKLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 61  VMVRLPSGAEKLIDTRCRATIGQVSNPSHGSRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEGRSKS G++G+GS TPWGKP KSGYKTG LKR+K
Sbjct: 121 HGGGEGRSKSGGNYGRGSLTPWGKPCKSGYKTGPLKRRK 159

[Close]

BLAST of CmaCh02G006200 vs. NCBI nr
Match: gi|1021479946|ref|XP_016183168.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial-like [Arachis ipaensis])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 133/159 (83.65%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M N M   DINS+IGSCMPLS+MRIGTIIHN+E+NPGQGGKLVR+AGTCAKILKEPTS+Y
Sbjct: 38  MMNQMMYSDINSRIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKY 97

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
           CL++LPSG +K+IDSRCRAT+G VSNPSHG +KLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 98  CLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGQSRWLGRRPVVRGVAMNPVDHP 157

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEG+SKSSG +GKGSRTPWGKPTKSG+KTG LKR+K
Sbjct: 158 HGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK 196

[Close]

BLAST of CmaCh02G006200 vs. NCBI nr
Match: gi|1012114978|ref|XP_015960923.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial [Arachis duranensis])

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 132/159 (83.02%), Postives = 149/159 (93.71%), Query Frame = 1


Query: 1   MSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGTCAKILKEPTSRY 60
           M N M   DINS+IGSCMPLS+MRIGTIIHN+E+NPGQGGKLVR+AGTCAKILKEPTS+Y
Sbjct: 38  MMNQMMYSDINSRIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKY 97

Query: 61  CLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHP 120
           CL++LP+G +K+IDSRCRAT+G VSNPSHG +KLRKAGQSRWLGRRPVVRGVAMNPVDHP
Sbjct: 98  CLIQLPTGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGQSRWLGRRPVVRGVAMNPVDHP 157

Query: 121 HGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 160
           HGGGEG+SKSSG +GKGSRTPWGKPTKSG+KTG LKR+K
Sbjct: 158 HGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK 196

The following BLAST results are available for this feature:

BLAST of CmaCh02G006200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM02_ORYSI	1.5e-53	69.18	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE...	[more]
RM02_ORYSA	1.5e-53	69.18	60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1	[more]
RM02_ORYSJ	1.5e-53	69.18	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ...	[more]
RM02_MARPO	2.0e-48	65.75	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV...	[more]
RL2_BACAA	7.0e-38	54.73	50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1	[more]

BLAST of CmaCh02G006200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059AZX8_EUCGR	6.1e-73	84.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01868 PE=4 SV=1	[more]
A0A059B0K7_EUCGR	6.1e-73	84.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01868 PE=4 SV=1	[more]
A0A0G2YF57_9ROSI	2.3e-72	84.91	Ribosomal protein L2 OS=Hypseocharis bilobata GN=rpl2 PE=2 SV=1	[more]
A0A0G2YFD1_9ROSI	6.7e-72	85.53	Ribosomal protein L2 OS=Monsonia emarginata GN=rpl2 PE=2 SV=1	[more]
I3SGD7_LOTJA	1.1e-71	87.42	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmaCh02G006200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44065.1	4.0e-60	70.44	Ribosomal protein L2 family	[more]
ATCG00830.1	8.7e-31	47.02	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	8.7e-31	47.02	ATCG01310.1 ribosomal protein L2	[more]
AT3G51190.1	1.4e-20	43.33	Ribosomal protein L2 family	[more]
AT2G18020.1	1.4e-17	40.17	Ribosomal protein L2 family	[more]

BLAST of CmaCh02G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629093210\|gb\|KCW59205.1\|	8.7e-73	84.28	hypothetical protein EUGRSUZ_H01868 [Eucalyptus grandis]	[more]
gi\|702454074\|ref\|XP_010026376.1\|	8.7e-73	84.28	PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Eucalyp...	[more]
gi\|629093211\|gb\|KCW59206.1\|	8.7e-73	84.28	hypothetical protein EUGRSUZ_H01868 [Eucalyptus grandis]	[more]
gi\|1021479946\|ref\|XP_016183168.1\|	1.1e-72	83.65	PREDICTED: 60S ribosomal protein L2, mitochondrial-like [Arachis ipaensis]	[more]
gi\|1012114978\|ref\|XP_015960923.1\|	2.5e-72	83.02	PREDICTED: 60S ribosomal protein L2, mitochondrial [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR005880	Ribosomal_L2_bac/org-type
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR014726	Ribosomal_L2_dom3
IPR022669	Ribosomal_L2_C
IPR022671	Ribosomal_L2_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G006200.1	CmaCh02G006200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 8..152 score: 8.7
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAMs	TIGR01171	TIGR01171	coord: 6..157 score: 3.0
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 14..149 score: 2.56
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 10..84 score: 3.6
IPR014726	Ribosomal protein L2, domain 3	GENE3D	G3DSA:4.10.950.10		coord: 85..157 score: 3.0
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 13..143 score: 6.0
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 12..145 score: 3.9
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 107..118 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G006200	Cucsa.250010	Cucumber (Gy14) v1	cgycmaB0698
CmaCh02G006200	Cla007796	Watermelon (97103) v1	cmawmB584
CmaCh02G006200	Csa2G302080	Cucumber (Chinese Long) v2	cmacuB584
CmaCh02G006200	MELO3C023260	Melon (DHL92) v3.5.1	cmameB550
CmaCh02G006200	ClCG02G000640	Watermelon (Charleston Gray)	cmawcgB544
CmaCh02G006200	CSPI02G15580	Wild cucumber (PI 183967)	cmacpiB589
CmaCh02G006200	CmoCh02G006240	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G006200	CmoCh20G010770	Cucurbita moschata (Rifu)	cmacmoB616
CmaCh02G006200	Lsi10G007120	Bottle gourd (USVL1VR-Ls)	cmalsiB542
CmaCh02G006200	Cp4.1LG16g00760	Cucurbita pepo (Zucchini)	cmacpeB623
CmaCh02G006200	MELO3C023260.2	Melon (DHL92) v3.6.1	cmamedB629
CmaCh02G006200	CsaV3_2G018130	Cucumber (Chinese Long) v3	cmacucB0695
CmaCh02G006200	Cla97C02G026910	Watermelon (97103) v2	cmawmbB632
CmaCh02G006200	CsGy2G015550	Cucumber (Gy14) v2	cgybcmaB223
CmaCh02G006200	Carg11685	Silver-seed gourd	carcmaB1466
CmaCh02G006200	Carg24325	Silver-seed gourd	carcmaB1005

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G006200	CmaCh20G010690	Cucurbita maxima (Rimu)	cmacmaB480

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G006200	Cucurbita pepo (Zucchini)	cmacpeB646