ClCG02G000640 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G000640
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L2, putative
LocationCG_Chr02 : 663459 .. 667547 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCAAGTACCTGGAATTATTCCCTTTCGCACTGCTTCAATCGGAAGGGTCATGGCTATGAGATCCGCGCCCGCGTTTGCTCTTCGGGGCCTCAGAAGGTTCTCTTCCAGAAGGCCAGTTTCATCTCCAATCAATCAGGAACCCACCTCCGACCTTCTAGTTTCTGGCAAGTCCCTCTTCCCATTTTCCTTTATCTCATCTTCTTATCTGCGCCTTTCTTTCTGTTTACTTTCTTTATCTTTTGATTTTGAGTTCAAAGATTTTCTTGTGGTTGGAATGTTTGTCTACTCTGTATGTCCTGGTTATTGTGAAACGTCTTGTGATTTAATTGCTATCTTTTAATTTTCTGGAACGCAGAATGCTTATGTACATTTTTGGTTTTGTTACTTTCTTCATTTATTATGTGCTAGACATACTATCAAAAGGTGGAATAAAACAGTCTAGGGGCAGTGGAAACCTCTGCCCAAAAACTACAAAAGAAGGGCCTTCTAATTGTTAATAATAAGCATACCTCTTGTTAATAATTACTTTTCTACACTTGCTCATTTTGATTCTTTATGTAATAGTGTTAAGCTCACCATCTCGGGGTGGTGCTCAAACCATGGGAAATTCTTTAAAGGTTTCTAACTTTCTAGACTTGCCCTTCAATCTGTAGCTTCCCTCTTCGTATTAATCACCTGTTCTGGAACAAGACTGGTGTTATTTGGCTCAACTTCATTTGACACTTTCTTTGGTGCACTTGGATTGAAAGAAACCAAATATATCTACCTCCATCACTCTTTTATTAGCTCCTTTTTCGTTCTTTTTTTTCTTTAATTCTCTTTTTGTTAAAATAACACAATGCTTCATTCAGCTCCTTGGACCTTACCTAACTAACCTTCCACGCTAGAAATTTCATTAGTAAAGAACCTGTAAAATGGACCTTTACTTCGTTGATCTCTTCTGATAAGAGCTAGAATTTCTTTATCAATATGGGTAATTGTCAAAGGAGAATTAAAGAGCTCCCTCTTCTCTCCCAAATACAGACTCACAAGGATTTTAGCCAAAAAGATAGCCATGTAAGCCCTACACTCGAAATATATAATGACTCCCAACAATAACGTTCTCTCGGGCCTACATGTAACGAACTTCTAACAATTTGCTATTCTTGATTCCAACTCCTCCCCTTCTCTTATACATATATTTAATCCAAGGTCTAAAATCTTCCATGATCAAAGCAAGGCACCTAAGAGGACTCTTCATCCTTTCAATATACAGCTTGTGCAATAACTTCTTCTGTTTTTGGTGGCTCCTTTCATTAGGTTGGTCTCTGTTTTGTATCGTCATTTGTACGAATGTGGTGTCCTTAGAAAAATAATAATAATGATGATTGTAAATGTGGATGACAATATATATGAGATGATTTATGCTTACCCTAATGTTTTTTTAGCAGAAAGCTATACACAAATTGATGCTTAGTACTTGAGATAATATGGCTTTGGATTCTTCCAATGATTTAAAGTATGACTAGGCACACATCATCCTTGAGCAAGAGAATTGTGTTTCACCTCTTTCTGTGAGGTGCACACCTGGTGCCTTTTAGCCATGAGATCTTCTAGGGGTCTTTGGCAGAGAATTGTTGAGTTCTGTTTTCATTGAACAAAGTCTTACTATCTCCTTAGAAGAGCCTTCATTTCTTAAAACTTACAATATCTAACATCGATTCACTGTCATTAAATTGTTCTTGTAATTGAACCACTTTTAATTTAATTGTCCATATTTTATGCATAAGTTGATTCTTGATCAAATTTTTAATGAAATGTTTGAATCAAAAACTTATGCATTACATCATTAAAAGTAATAGGAGGACTACTTATGCATTACATCATTAAAAGTAATAGGAGGACTACTTATGCATTACATCATTAAAAGTAATAGGAGGACTAAGTCAATACAAATAAATGTTTGAAAACCAAAATGTAAAAGGATCCCACTAAGTTAAAGCTATCAAGAAAAGACTCCCCAAGGAAGAATAAGAACAACCTAGCCGGCAGACACTATGAACAATTAATTGAACCTTAAGAAAGAAAGAAAAAAAATAATTGATTACATTAGTAGTGTAGAATGAAAATGGACTTAGCGGAGAACACAAAAAAGAAGCATAACTCTTTGTCAAGTGTCCCATCTAAAAACCCATTGAGGCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTACAAAGATGCTTTGGTTCCTTTCAGATCAAATACTCCAAAGAATAGTTTGACCACATTTCATCATATTTTAGCTTTTTTCTTCAACTTCATAACACATAAGTTGATTTATTTATTTTTTGAAGAGCATAAGTTGAAAGTTACTCTCAAGCTTTTTTATCAAACACCTATGCCAAAATGAAAGACTATAAAAGCTGTTGTCAAATCTTACCAATTTAAGCACAGTGAATAGATAAATGAAATTAATCTTCACCTGCTAAAGACACTGGCTGAACTTAGCCATTCAAAATCAAAGCAAGTTATTTCCAACTGAATTTTGTCGACTGTGTTAAGTTTATCCAAATTAGCCAACCACATGAAGTATTAATTTTTGGGGAAAAAGTAACTTTTATCCTTGAACTTATTAAGGTTCATTAATTTTTTCACCATAAATTTTCAATTTCAACAAATCAAACGCTAGACTTAGACACTTCCCTTCAATTTCCATTACTTTCACCTACTGATTTAACAGAAACCAAAGTAAAATTCTCTGAAAACTATAGCTAATTTCAACCAAAAAAATCTTAAGCTGTTTGCAAACTTAAACTCAATCAACTCACAAGATTGATTACAGTACATCTTTCCATTGAATCAATCTCCTAAAACACACAAATTTCTCGGTGTAACATTAGATGCATTTCAGGCTTTGGTTCGCATTTCACGTTTATAATTGCAATATCTTTCTTATTTGGCTCTCCCTCCTGTTTCTGGAACAGAAAAGACTAAAGAGTGATAATTATCTTTTTTTTTTTTTTTTTCCTTCTTTTTATTATTTTTGTTGGTACATGAACACTTGAAGAATGAAGAAACCTGGACAGATCAAAGATTACTGAATGATGTTTTCTTATGTTTCATTCTAACAGCCTGCAGTTAGAAGCTTTTTTTCCCCATATGGATCAATTGGTTGAAATAGGTTCTCGTTTGCTCAGTTTCTTGGGCCTTCCGTACTAATTTTGTAAAAGCTATATTTTATTGTTTATTTTAATTTTACCTTTGAATTATTGATGTCTGCCAAAGTATGCTATCCTAAAACTTGGAGCTTGTTTGGAATGATTTTTGAAATGCTAAAAAATGTTTGTAAGCCCTTAAAAAATCATTTCTGACTGTCCTTCAACCTCGATTGAGTTTAATTATCTTCTGTTAGAAAATATTAGTGAGCTTTTTTTTCTTTAGTAAAATATTAATGAACTTTTTGGTTTGATATTTTATCAAATTATCTTAATATCTAATTCTTATGTCATATTTTTCCTGATGTATTAGAATTCTTCTTCTAGGTTCATTATGTTACGAATACTTTTACATCATTCTTCACAGATCTAGGGACATACGGTAGGACGTTCCGTGAACGAATGACAAATTACATGGCTACCCTCGACATCAATTCACAAATTGGAAGCTGCATGCCGCTTTCTGCAATGCGCATTGGTACGATTATCCACAATATCGAGATAAATCCAGGTCAAGGCGGGAAGCTCGTGCGGTCAGCGGGAACATCTGCAAGGATATTAAAACTGCCAGAGGGAAAGTCAAGATACTGCTTGGTGAAACTCCCTTCGCGTGAAGAGAAGTTGATTGATTCTAGGTGCAAAGCAACAATTGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGAGGAGTGGCAATGAACCCAGTGGATCATCCTCATGGAGGAGGAGAGGGTAAGAGCAAGAGTAGTGGGAGCCATGGAAAGGGGTCTCGCACACCCTGGGGGAAGCCAACTAAGTGCGGTTACAAGACTCGATCTCTCAGGCGCAAAAAACAAGAA

mRNA sequence

ATCCCAAGTACCTGGAATTATTCCCTTTCGCACTGCTTCAATCGGAAGGGTCATGGCTATGAGATCCGCGCCCGCGTTTGCTCTTCGGGGCCTCAGAAGGTTCTCTTCCAGAAGGCCAGTTTCATCTCCAATCAATCAGGAACCCACCTCCGACCTTCTAATCTAGGGACATACGGTAGGACGTTCCGTGAACGAATGACAAATTACATGGCTACCCTCGACATCAATTCACAAATTGGAAGCTGCATGCCGCTTTCTGCAATGCGCATTGGTACGATTATCCACAATATCGAGATAAATCCAGGTCAAGGCGGGAAGCTCGTGCGGTCAGCGGGAACATCTGCAAGGATATTAAAACTGCCAGAGGGAAAGTCAAGATACTGCTTGGTGAAACTCCCTTCGCGTGAAGAGAAGTTGATTGATTCTAGGTGCAAAGCAACAATTGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGAGGAGTGGCAATGAACCCAGTGGATCATCCTCATGGAGGAGGAGAGGGTAAGAGCAAGAGTAGTGGGAGCCATGGAAAGGGGTCTCGCACACCCTGGGGGAAGCCAACTAAGTGCGGTTACAAGACTCGATCTCTCAGGCGCAAAAAACAAGAA

Coding sequence (CDS)

ATCCCAAGTACCTGGAATTATTCCCTTTCGCACTGCTTCAATCGGAAGGGTCATGGCTATGAGATCCGCGCCCGCGTTTGCTCTTCGGGGCCTCAGAAGGTTCTCTTCCAGAAGGCCAGTTTCATCTCCAATCAATCAGGAACCCACCTCCGACCTTCTAATCTAGGGACATACGGTAGGACGTTCCGTGAACGAATGACAAATTACATGGCTACCCTCGACATCAATTCACAAATTGGAAGCTGCATGCCGCTTTCTGCAATGCGCATTGGTACGATTATCCACAATATCGAGATAAATCCAGGTCAAGGCGGGAAGCTCGTGCGGTCAGCGGGAACATCTGCAAGGATATTAAAACTGCCAGAGGGAAAGTCAAGATACTGCTTGGTGAAACTCCCTTCGCGTGAAGAGAAGTTGATTGATTCTAGGTGCAAAGCAACAATTGGTCAGGTGTCTAACCCAAGCCATGGAACCCGGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGAGGAGTGGCAATGAACCCAGTGGATCATCCTCATGGAGGAGGAGAGGGTAAGAGCAAGAGTAGTGGGAGCCATGGAAAGGGGTCTCGCACACCCTGGGGGAAGCCAACTAAGTGCGGTTACAAGACTCGATCTCTCAGGCGCAAAAAACAAGAA

Protein sequence

IPSTWNYSLSHCFNRKGHGYEIRARVCSSGPQKVLFQKASFISNQSGTHLRPSNLGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKKQE
Homology
[Close]
BLAST of ClCG02G000640 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 95/146 (65.07%), Postives = 118/146 (80.82%), Query Frame = 1 

Query: 73  LDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKL 132
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL R+AGT A+I+K P  +   CLV+L
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ---CLVRL 413

Query: 133 PSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGE 192
           PS  EKLIDSRC+ATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGE
Sbjct: 414 PSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGE 473

Query: 193 GKSKSSGSHGKGSRTPWGKPTKCGYK 219
           G++K     G+ S +PWGKPTK G++
Sbjct: 474 GRTKG----GRPSVSPWGKPTKAGFR 492

[Close]
BLAST of ClCG02G000640 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 95/146 (65.07%), Postives = 118/146 (80.82%), Query Frame = 1 

Query: 73  LDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKL 132
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL R+AGT A+I+K P  +   CLV+L
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ---CLVRL 413

Query: 133 PSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGE 192
           PS  EKLIDSRC+ATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGE
Sbjct: 414 PSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGE 473

Query: 193 GKSKSSGSHGKGSRTPWGKPTKCGYK 219
           G++K     G+ S +PWGKPTK G++
Sbjct: 474 GRTKG----GRPSVSPWGKPTKAGFR 492

[Close]
BLAST of ClCG02G000640 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 95/146 (65.07%), Postives = 118/146 (80.82%), Query Frame = 1 

Query: 73  LDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKL 132
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL R+AGT A+I+K P  +   CLV+L
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ---CLVRL 413

Query: 133 PSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGE 192
           PS  EKLIDSRC+ATIG VSNP+HG RKLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGE
Sbjct: 414 PSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGE 473

Query: 193 GKSKSSGSHGKGSRTPWGKPTKCGYK 219
           G++K     G+ S +PWGKPTK G++
Sbjct: 474 GRTKG----GRPSVSPWGKPTKAGFR 492

[Close]
BLAST of ClCG02G000640 vs. Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-47
Identity = 92/147 (62.59%), Postives = 114/147 (77.55%), Query Frame = 1 

Query: 79  IGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEK 138
           +G+C+PL+ + IGT +HNIE NPGQG KL R+AGT A+I++  E   + C+V+LPS  +K
Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQ-CIVRLPSGVDK 418

Query: 139 LIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSS 198
           LIDSRC+ATIG VSN +HG RK  KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEG++K  
Sbjct: 419 LIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG- 478

Query: 199 GSHGKGSRTPWGKPTKCGYKTRSLRRK 226
              G+ S +PWGKPTK G+KT   +R+
Sbjct: 479 ---GRPSVSPWGKPTKGGFKTVVRKRR 500

[Close]
BLAST of ClCG02G000640 vs. Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 8.2e-40
Identity = 85/151 (56.29%), Postives = 111/151 (73.51%), Query Frame = 1 

Query: 74  DINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLP 133
           DI+ +IG+ +PL  + IGT+IHNIE+NPG+GGK+VRSAG+SA+++   E  + +C++KLP
Sbjct: 121 DIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKDE--NGFCMLKLP 180

Query: 134 SREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEG 193
           S E +L  +   ATIG +SN  +   K+ KAG+SRW+GRRP+VRGVAMNPVDHPHGGGEG
Sbjct: 181 SGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRSRWMGRRPIVRGVAMNPVDHPHGGGEG 240

Query: 194 KSKSSGSHGKGSRTPWGKPTKCGYKTRSLRR 225
           K+    S G+ S TPW  PTK G  TRS R+
Sbjct: 241 KT----SGGRPSVTPWSWPTK-GQPTRSKRK 264

[Close]
BLAST of ClCG02G000640 vs. TrEMBL
Match: A0A0A0LQ76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302080 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 156/171 (91.23%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 56  GTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSA 115
           G  GRTFRERMTNYMATLDINSQIGSCMPL  MRIGTIIHNIEINPGQGGKLVRSAGTSA
Sbjct: 3   GVEGRTFRERMTNYMATLDINSQIGSCMPLGLMRIGTIIHNIEINPGQGGKLVRSAGTSA 62

Query: 116 RILKLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 175
           RILKLPEGKSR CLVKLPSREEKLID++C+ATIGQVSNP HGT+KLRKAGQSRWLGRRP 
Sbjct: 63  RILKLPEGKSRCCLVKLPSREEKLIDAKCRATIGQVSNPGHGTKKLRKAGQSRWLGRRPK 122

Query: 176 VRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           VRGVAMNPVDHPHGGGEGKSKSSGSHG+GSRTPWGKPTKCGYKTRS +RK+
Sbjct: 123 VRGVAMNPVDHPHGGGEGKSKSSGSHGRGSRTPWGKPTKCGYKTRSAKRKR 173

[Close]
BLAST of ClCG02G000640 vs. TrEMBL
Match: D7T2J7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g01100 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.6e-72
Identity = 142/205 (69.27%), Postives = 163/205 (79.51%), Query Frame = 1 

Query: 22  IRARVCSSGPQKVLFQKASFISNQSGTHLRPSNLGTYGRTFRERMTNYMATLDINSQIGS 81
           +RAR  SS   K L   +  ++N S  +L      +    FRE M N M +LDINSQIGS
Sbjct: 4   VRARAASSTLLKRLLFPS--VANPSHRNLSSVAKDSPHDAFRESMMNQMFSLDINSQIGS 63

Query: 82  CMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEKLID 141
           CMPL+AMRIGTIIHNIEINPGQGGKLVR+AGTSA++LK P   SRY LV++PS  +KLID
Sbjct: 64  CMPLAAMRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPT--SRYVLVRMPSGVQKLID 123

Query: 142 SRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGSH 201
           +RC+ATIG VSNP HG +KLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEG+SKS GSH
Sbjct: 124 TRCRATIGTVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSH 183

Query: 202 GKGSRTPWGKPTKCGYKTRSLRRKK 227
           G+GS TPWGKPTKCGYKT  L+R+K
Sbjct: 184 GRGSLTPWGKPTKCGYKTGPLKRRK 204

[Close]
BLAST of ClCG02G000640 vs. TrEMBL
Match: A0A061ECK1_THECC (50S ribosomal protein L2, putative OS=Theobroma cacao GN=TCM_017084 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.4e-70
Identity = 130/163 (79.75%), Postives = 145/163 (88.96%), Query Frame = 1 

Query: 64  ERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEG 123
           E M   +  LDINSQIGSCMPL+AMRIGTIIHNIE+NPGQGGKLVR+AGTSA+ILK P  
Sbjct: 43  ENMKRELLHLDINSQIGSCMPLAAMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEP-- 102

Query: 124 KSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNP 183
           KSRYCLV++PS  EKLIDSRC+AT+G VSNPSHG +KLRKAGQSRWLGRRP VRGVAMNP
Sbjct: 103 KSRYCLVRMPSGVEKLIDSRCRATVGMVSNPSHGAKKLRKAGQSRWLGRRPTVRGVAMNP 162

Query: 184 VDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           +DHPHGGGEG+SKSSGS+GK SRTPWGKP KCGYKT S +R+K
Sbjct: 163 IDHPHGGGEGRSKSSGSYGKTSRTPWGKPCKCGYKTASSKRRK 203

[Close]
BLAST of ClCG02G000640 vs. TrEMBL
Match: A0A0G2YF57_9ROSI (Ribosomal protein L2 OS=Hypseocharis bilobata GN=rpl2 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.1e-70
Identity = 138/183 (75.41%), Postives = 151/183 (82.51%), Query Frame = 1 

Query: 47  GTHLRPSNLGT---YGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQ 106
           GT +R  NL        +    M N M  LDINSQIGSCMPLSAMRIGT+IHNIE+ PGQ
Sbjct: 50  GTTIRNMNLSPDQGVNDSLHGGMMNQMLYLDINSQIGSCMPLSAMRIGTMIHNIELRPGQ 109

Query: 107 GGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRK 166
           GGKLVR+AGT A+I+K P  KSRY LVK+PS  EKLID+RCKATIGQVSNPSHGT+KLRK
Sbjct: 110 GGKLVRAAGTCAKIMKEP--KSRYVLVKMPSGAEKLIDTRCKATIGQVSNPSHGTKKLRK 169

Query: 167 AGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLR 226
           AG SRWLGRRPVVRGVAMNPVDHPHGGGEG+SKSSGSHGK SRTPWGKPTK GYKT  L+
Sbjct: 170 AGHSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGSHGKCSRTPWGKPTKSGYKTGPLK 229

[Close]
BLAST of ClCG02G000640 vs. TrEMBL
Match: Q8VZZ6_GOSAR (Ribosomal protein L2 (Fragment) OS=Gossypium arboreum PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-69
Identity = 127/162 (78.40%), Postives = 144/162 (88.89%), Query Frame = 1 

Query: 64  ERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEG 123
           E M   +  LDINSQIGSCMP+++MRIGT IHNIE+NPGQGGKLVR+AGTSA+ILK P  
Sbjct: 31  ENMKRDLLNLDINSQIGSCMPIASMRIGTFIHNIEVNPGQGGKLVRAAGTSAKILKEP-- 90

Query: 124 KSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNP 183
           KSRYCL++LPS  EKLID+RC+AT+G VSNPSHG +KLRKAGQSRWLGRRPVVRGVAMNP
Sbjct: 91  KSRYCLIRLPSGAEKLIDTRCRATVGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNP 150

Query: 184 VDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRK 226
           VDHPHGGGEG+SKSSGS+GKGSRTPWGKP KCG+KT   RR+
Sbjct: 151 VDHPHGGGEGRSKSSGSYGKGSRTPWGKPCKCGFKTAKNRRR 190

[Close]
BLAST of ClCG02G000640 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-60
Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = 1 

Query: 57  TYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSAR 116
           T  ++   +M   M  +DINS IGS MPL  MRIGTIIHNIE+NPGQG K+VR+AGT+A+
Sbjct: 37  TQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAK 96

Query: 117 ILKLP-EGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 176
           ILK P +GK   CL+KLPS + K I+++C+ATIG VSNPSHGT+KL KAGQSRWLG RP 
Sbjct: 97  ILKEPAKGK---CLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPK 156

Query: 177 VRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKKQ 228
           VRGVAMNP DHPHGGGEGKSKSSGS G+ S +PWGKP K GYK+ S+++KK+
Sbjct: 157 VRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWGKPCKGGYKSASVKKKKK 205

[Close]
BLAST of ClCG02G000640 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 76/153 (49.67%), Postives = 98/153 (64.05%), Query Frame = 1 

Query: 74  DINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLP 133
           ++  ++G+ +PL+ M +GT IHNIEI  G+GG+L R+AG  A+++   EGKS    +KLP
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA-KEGKS--ATLKLP 178

Query: 134 SREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEG 193
           S E +LI   C AT+GQV N     + L +AG   WLG+RPVVRGV MNPVDHPHGGGEG
Sbjct: 179 SGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 238

Query: 194 KSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           ++       K   TPWG P   G +TR  +RKK
Sbjct: 239 RAPIG---RKKPVTPWGYPA-LGRRTR--KRKK 262

[Close]
BLAST of ClCG02G000640 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 76/153 (49.67%), Postives = 98/153 (64.05%), Query Frame = 1 

Query: 74  DINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLP 133
           ++  ++G+ +PL+ M +GT IHNIEI  G+GG+L R+AG  A+++   EGKS    +KLP
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA-KEGKS--ATLKLP 178

Query: 134 SREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEG 193
           S E +LI   C AT+GQV N     + L +AG   WLG+RPVVRGV MNPVDHPHGGGEG
Sbjct: 179 SGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 238

Query: 194 KSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           ++       K   TPWG P   G +TR  +RKK
Sbjct: 239 RAPIG---RKKPVTPWGYPA-LGRRTR--KRKK 262

[Close]
BLAST of ClCG02G000640 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 1 

Query: 76  NSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSR 135
           N  +G+ +PL ++  G +I N+E++ G  G L R++G  A ++     +S    VKLPS 
Sbjct: 96  NLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIA-HNPESNTTRVKLPSG 155

Query: 136 EEKLIDSRCKATIGQVSNPSHGTRKLRKAGQS--RWLGRR---PVVRGVAMNPVDHPHGG 192
            +K++ S C+A IGQV+      + L KAG +  ++  +R   PVVRGVAMNPV+HPHGG
Sbjct: 156 SKKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGG 215

[Close]
BLAST of ClCG02G000640 vs. TAIR10
Match: AT2G18020.1 (AT2G18020.1 Ribosomal protein L2 family)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1 

Query: 79  IGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEK 138
           +G+ +PL ++  G ++ N+E + G  G L R++G  A ++      S    +KLPS  +K
Sbjct: 98  VGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIA-HNPDSDTTRIKLPSGSKK 157

Query: 139 LIDSRCKATIGQVSNPSHGTRKLRKAGQS--RWLGRR---PVVRGVAMNPVDHPHGGG 192
           ++ S C+A IGQV+      + + KAG +  ++  +R   P VRGVAMNPV+HPHGGG
Sbjct: 158 IVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGG 214

[Close]
BLAST of ClCG02G000640 vs. NCBI nr
Match: gi|449459236|ref|XP_004147352.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 156/171 (91.23%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 56  GTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSA 115
           G  GRTFRERMTNYMATLDINSQIGSCMPL  MRIGTIIHNIEINPGQGGKLVRSAGTSA
Sbjct: 44  GVEGRTFRERMTNYMATLDINSQIGSCMPLGLMRIGTIIHNIEINPGQGGKLVRSAGTSA 103

Query: 116 RILKLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 175
           RILKLPEGKSR CLVKLPSREEKLID++C+ATIGQVSNP HGT+KLRKAGQSRWLGRRP 
Sbjct: 104 RILKLPEGKSRCCLVKLPSREEKLIDAKCRATIGQVSNPGHGTKKLRKAGQSRWLGRRPK 163

Query: 176 VRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           VRGVAMNPVDHPHGGGEGKSKSSGSHG+GSRTPWGKPTKCGYKTRS +RK+
Sbjct: 164 VRGVAMNPVDHPHGGGEGKSKSSGSHGRGSRTPWGKPTKCGYKTRSAKRKR 214

[Close]
BLAST of ClCG02G000640 vs. NCBI nr
Match: gi|700207022|gb|KGN62141.1| (hypothetical protein Csa_2G302080 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 156/171 (91.23%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 56  GTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSA 115
           G  GRTFRERMTNYMATLDINSQIGSCMPL  MRIGTIIHNIEINPGQGGKLVRSAGTSA
Sbjct: 3   GVEGRTFRERMTNYMATLDINSQIGSCMPLGLMRIGTIIHNIEINPGQGGKLVRSAGTSA 62

Query: 116 RILKLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 175
           RILKLPEGKSR CLVKLPSREEKLID++C+ATIGQVSNP HGT+KLRKAGQSRWLGRRP 
Sbjct: 63  RILKLPEGKSRCCLVKLPSREEKLIDAKCRATIGQVSNPGHGTKKLRKAGQSRWLGRRPK 122

Query: 176 VRGVAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           VRGVAMNPVDHPHGGGEGKSKSSGSHG+GSRTPWGKPTKCGYKTRS +RK+
Sbjct: 123 VRGVAMNPVDHPHGGGEGKSKSSGSHGRGSRTPWGKPTKCGYKTRSAKRKR 173

[Close]
BLAST of ClCG02G000640 vs. NCBI nr
Match: gi|659121966|ref|XP_008460907.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 6.4e-85
Identity = 153/169 (90.53%), Postives = 160/169 (94.67%), Query Frame = 1 

Query: 59  GRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARIL 118
           GRTFRERM NYMATLDINSQIGSCMPL AMRIGTIIHNIEINPGQGGKLVRSAGT ARIL
Sbjct: 49  GRTFRERMANYMATLDINSQIGSCMPLGAMRIGTIIHNIEINPGQGGKLVRSAGTFARIL 108

Query: 119 KLPEGKSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRG 178
           KLPEGKSR CLVKLPSREEK ID++C+ATIGQVSNP HG +KLRKAGQSRWLGRRP VRG
Sbjct: 109 KLPEGKSRCCLVKLPSREEKFIDAKCRATIGQVSNPGHGAKKLRKAGQSRWLGRRPTVRG 168

Query: 179 VAMNPVDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKKQ 228
           VAMNPVDHPHGGGEGKSKSSGSHG+GSRTPWGKPTKCGYKTRS +RK+Q
Sbjct: 169 VAMNPVDHPHGGGEGKSKSSGSHGRGSRTPWGKPTKCGYKTRSPKRKRQ 217

[Close]
BLAST of ClCG02G000640 vs. NCBI nr
Match: gi|731391362|ref|XP_010650732.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial [Vitis vinifera])

HSP 1 Score: 278.9 bits (712), Expect = 8.1e-72
Identity = 142/205 (69.27%), Postives = 163/205 (79.51%), Query Frame = 1 

Query: 22  IRARVCSSGPQKVLFQKASFISNQSGTHLRPSNLGTYGRTFRERMTNYMATLDINSQIGS 81
           +RAR  SS   K L   +  ++N S  +L      +    FRE M N M +LDINSQIGS
Sbjct: 4   VRARAASSTLLKRLLFPS--VANPSHRNLSSVAKDSPHDAFRESMMNQMFSLDINSQIGS 63

Query: 82  CMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEGKSRYCLVKLPSREEKLID 141
           CMPL+AMRIGTIIHNIEINPGQGGKLVR+AGTSA++LK P   SRY LV++PS  +KLID
Sbjct: 64  CMPLAAMRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPT--SRYVLVRMPSGVQKLID 123

Query: 142 SRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGSH 201
           +RC+ATIG VSNP HG +KLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEG+SKS GSH
Sbjct: 124 TRCRATIGTVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSH 183

Query: 202 GKGSRTPWGKPTKCGYKTRSLRRKK 227
           G+GS TPWGKPTKCGYKT  L+R+K
Sbjct: 184 GRGSLTPWGKPTKCGYKTGPLKRRK 204

[Close]
BLAST of ClCG02G000640 vs. NCBI nr
Match: gi|590646897|ref|XP_007031749.1| (50S ribosomal protein L2, putative [Theobroma cacao])

HSP 1 Score: 273.5 bits (698), Expect = 3.4e-70
Identity = 130/163 (79.75%), Postives = 145/163 (88.96%), Query Frame = 1 

Query: 64  ERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEINPGQGGKLVRSAGTSARILKLPEG 123
           E M   +  LDINSQIGSCMPL+AMRIGTIIHNIE+NPGQGGKLVR+AGTSA+ILK P  
Sbjct: 43  ENMKRELLHLDINSQIGSCMPLAAMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEP-- 102

Query: 124 KSRYCLVKLPSREEKLIDSRCKATIGQVSNPSHGTRKLRKAGQSRWLGRRPVVRGVAMNP 183
           KSRYCLV++PS  EKLIDSRC+AT+G VSNPSHG +KLRKAGQSRWLGRRP VRGVAMNP
Sbjct: 103 KSRYCLVRMPSGVEKLIDSRCRATVGMVSNPSHGAKKLRKAGQSRWLGRRPTVRGVAMNP 162

Query: 184 VDHPHGGGEGKSKSSGSHGKGSRTPWGKPTKCGYKTRSLRRKK 227
           +DHPHGGGEG+SKSSGS+GK SRTPWGKP KCGYKT S +R+K
Sbjct: 163 IDHPHGGGEGRSKSSGSYGKTSRTPWGKPCKCGYKTASSKRRK 203

The following BLAST results are available for this feature:
BLAST of ClCG02G000640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM02_ORYSI2.3e-5065.0760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE... [more]
RM02_ORYSJ2.3e-5065.0760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ... [more]
RM02_ORYSA2.3e-5065.0760S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1[more]
RM02_MARPO3.1e-4762.5960S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV... [more]
RM02_RECAM8.2e-4056.2960S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 S... [more]
BLAST of ClCG02G000640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ76_CUCSA1.1e-8691.23Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302080 PE=4 SV=1[more]
D7T2J7_VITVI5.6e-7269.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g01100 PE=4 SV=... [more]
A0A061ECK1_THECC2.4e-7079.7550S ribosomal protein L2, putative OS=Theobroma cacao GN=TCM_017084 PE=4 SV=1[more]
A0A0G2YF57_9ROSI3.1e-7075.41Ribosomal protein L2 OS=Hypseocharis bilobata GN=rpl2 PE=2 SV=1[more]
Q8VZZ6_GOSAR2.0e-6978.40Ribosomal protein L2 (Fragment) OS=Gossypium arboreum PE=4 SV=1[more]
BLAST of ClCG02G000640 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44065.11.5e-6066.28 Ribosomal protein L2 family[more]
ATCG00830.14.6e-3349.67ATCG00830.1 ribosomal protein L2[more]
ATCG01310.14.6e-3349.67ATCG01310.1 ribosomal protein L2[more]
AT3G51190.11.4e-1841.32 Ribosomal protein L2 family[more]
AT2G18020.12.5e-1538.14 Ribosomal protein L2 family[more]
BLAST of ClCG02G000640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459236|ref|XP_004147352.1|1.5e-8691.23PREDICTED: 60S ribosomal protein L2, mitochondrial [Cucumis sativus][more]
gi|700207022|gb|KGN62141.1|1.5e-8691.23hypothetical protein Csa_2G302080 [Cucumis sativus][more]
gi|659121966|ref|XP_008460907.1|6.4e-8590.53PREDICTED: 60S ribosomal protein L2, mitochondrial [Cucumis melo][more]
gi|731391362|ref|XP_010650732.1|8.1e-7269.27PREDICTED: 60S ribosomal protein L2, mitochondrial [Vitis vinifera][more]
gi|590646897|ref|XP_007031749.1|3.4e-7079.7550S ribosomal protein L2, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR005880Ribosomal_L2_bac/org-type
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR014726Ribosomal_L2_dom3
IPR022669Ribosomal_L2_C
IPR022671Ribosomal_L2_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0051788 response to misfolded protein
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0032543 mitochondrial translation
biological_process GO:0008150 biological_process
biological_process GO:0006364 rRNA processing
biological_process GO:0009853 photorespiration
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005730 nucleolus
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0016740 transferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G000640.1ClCG02G000640.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 73..220
score: 1.8
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMsTIGR01171TIGR01171coord: 71..225
score: 5.9
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 79..223
score: 2.46
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 75..151
score: 4.9
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 152..226
score: 1.7
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 78..210
score: 2.2
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 77..212
score: 1.2
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 174..185
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G000640Csa2G302070Cucumber (Chinese Long) v2cuwcgB124
ClCG02G000640MELO3C023260Melon (DHL92) v3.5.1mewcgB091
ClCG02G000640Cla007796Watermelon (97103) v1wcgwmB206
ClCG02G000640Cla97C02G026910Watermelon (97103) v2wcgwmbB138
ClCG02G000640Bhi10G001904Wax gourdwcgwgoB289
ClCG02G000640CSPI02G15570Wild cucumber (PI 183967)cpiwcgB130
ClCG02G000640Cucsa.250010Cucumber (Gy14) v1cgywcgB440
ClCG02G000640CmaCh20G010690Cucurbita maxima (Rimu)cmawcgB482
ClCG02G000640CmaCh02G006200Cucurbita maxima (Rimu)cmawcgB544
ClCG02G000640CmoCh02G006240Cucurbita moschata (Rifu)cmowcgB540
ClCG02G000640CmoCh20G010770Cucurbita moschata (Rifu)cmowcgB480
ClCG02G000640Lsi10G007120Bottle gourd (USVL1VR-Ls)lsiwcgB056
ClCG02G000640Cp4.1LG16g00760Cucurbita pepo (Zucchini)cpewcgB268
ClCG02G000640Cp4.1LG05g10680Cucurbita pepo (Zucchini)cpewcgB647
ClCG02G000640CsGy2G015550Cucumber (Gy14) v2cgybwcgB121
ClCG02G000640MELO3C023260.2Melon (DHL92) v3.6.1medwcgB089
ClCG02G000640Carg11685Silver-seed gourdcarwcgB1030
ClCG02G000640Carg24325Silver-seed gourdcarwcgB0694
ClCG02G000640CsaV3_2G018130Cucumber (Chinese Long) v3cucwcgB139
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G000640Cucumber (Chinese Long) v2cuwcgB447
ClCG02G000640Watermelon (97103) v1wcgwmB193
ClCG02G000640Cucurbita pepo (Zucchini)cpewcgB066
ClCG02G000640Cucurbita pepo (Zucchini)cpewcgB274
ClCG02G000640Cucumber (Gy14) v2cgybwcgB411
ClCG02G000640Silver-seed gourdcarwcgB0785
ClCG02G000640Cucumber (Chinese Long) v3cucwcgB467
ClCG02G000640Watermelon (97103) v2wcgwmbB130
ClCG02G000640Wax gourdwcgwgoB309
ClCG02G000640Watermelon (Charleston Gray)wcgwcgB087
ClCG02G000640Cucumber (Gy14) v1cgywcgB135
ClCG02G000640Cucurbita maxima (Rimu)cmawcgB581
ClCG02G000640Wild cucumber (PI 183967)cpiwcgB468