CmaCh01G019850 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G019850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	LA-related protein 6 LA RNA-binding domain protein
Location	Cma_Chr01 : 12768388 .. 12773070 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGATTTGATCGGGCTAGATCTATTCAAACCCTAATTTTATTGTTTTGTTTTTGTTGGGTTGAAATCATGTTTTTCGAATTGATTTTTCAATTGATCATCTGTTCAAGTTGTTCTTCTCATCAATCTCGGTTCGTTCCGATCTAGCGGTAGGTTTTGGATCGGAATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTTCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCTGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGTTGATTCTCCTTCTAAGTCTGTTTTTAGAAGTATCAGTCCTCCCTTCTTGTGCATGATGTAGTTTATCTTGTGTTTTTTGAGCAGGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCTGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCATGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTTCCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGCGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTGATGCCCCCTACGCCACCTTACACTGCTCAGTTTCCCCAGCCTGTTTTACCTTATGGGAATCCGATGCATCCTCCTGGTGGGTGTTTTTCTAAGGACTAATGATGACAGTAGGTCTATAATTTTCCAATCTGAATGTTAATTTTCATCCTTGTTTTGATCAGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCTACCGCCTTCAGTGTACTATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCTGGTAATGTGGTTTCCCATGCGATCCATTTGGTTCTGTGTCTCATTTTTCATCATTAATGATTATAACTGTACATTCATGTCCACGCTGTTTGCAGTGACACGAATTTGATAATGGATGGATATCTAAGGTGCCGGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCAGTTTTTCTAGGGTAAGTTCTGATAATAATTCGCCAGTTCTTTATGAAAATAAAGAAAGTTAAATATATAGGTTTTAGAGCGGTCGTGAATTTTATTCATAAATAAATTGCTTATTGGGAAGTGCATGAATTTATTTTTATCATATAGCGTGTTCCATCTAATGTTAGTTTATTTCTAACTTTTTACTATATGAGAAACAAAAGAAAAGAGCTCCCTCAAGTGAGTCATATTTCAGACAATCTTCTTTTAGAACTATCCTTTGTCTTTTTCTCGGCAAAGTAGCACTATTCTTCATTTGATCCAATCCTTGAGGATAACTGTTAAAATCGTGATCGGGTTGAAGTCTTTTAGCCCCTCTTGTGAAGCAAGTTGGCTGTTCACCTCACATTCTTTACTCTCCATACTTAAAACCAAATTGCCTTTTAATCCAAATTTTTTATTAACTCAAGAGTTATCCACTCGACAAAAGGACCCTACTTTTCCTTCACATGATGATGGTTCCGATGCTAAATCCAATGTTAGTAGGAACATTGTGCAATCGATTACAAAACTTAACTAGGAGGACGTTGTTCTTGAAGATTCTTGTTTTGAAGCTTTTGGTTCATTATTTCGGAAAGGTGACTGATACTTTTCTTCAATATCTGCTAAATTCACTTTTTTTACTGAAACTTGTGGGTTTGAGATGCGTGAAATTCCCCACTGATTCAAGAAAGGAACTATATTCACTTAGCTCTCATCCTCAACAATTCTTGGTGTTGTAGATTAAAATGAAGACAATTTTTTTTAGTTGGTTACTTGAAGACAACTCGAACAAAATATATTTTGAAGACAACTCAAACAAACCATCCTTCCTTTAATTGGTTTAAAATACCACAGTTTTTTTAACCAGTTGATTACATAGTTTGGGTAGTTTGGGAATGAAAATCTCAAGATGGGTATGTTGCTAGTTGGACTAATCTTTTCGGAGTTTTGAGGCTTTTAGTTGGTTTAAAATACCAGTCTTTTTAACTAGTTGATTTCATAGTTTGAGTAGTTTGGGAATGAAAATCTTAAGATGGGTATGTTGCTAGTTGGACTATAATTTTACCGGAGTTTTGAGGCTTTTAGTTGTCTTAGTTCTTCTTGTATACTCGTACATAATTTCTCATATTTATATATTATTTTTTTCTAAATATTGAAGTCTATATTTGATTTATACTTGATGTCATATGTATTTGTATAGGTCAATATTAACATGTATCCATAATGTTTTCGTCGCACTCATGGCCTTTTTCTTTACCTGGAGCCAACATTTCCTTACTAGTTATGTCATTCAAACAGACTTATCAACAACAAGAGTATGTTAAAGGAAGACTACCTTTTTGCTAGAGAGGTGTTTTGTGTTAAAATTTGGTTTCTCGATCTTGTTTGTGCTCAAATGAGTGAAAACAAAGAGATTGTTGTACTAAAATTTTGTCATTGATCATCATGATGTCTTATCCTCCCTCTCAAATCTCTACCTTTGTTCATTTTTTTCTGGGTGGAGTGCGGACATTTGGTTGTGACCAAGGTTTTATTTGAGCAAATCTGTAGTGTTGGGTTGCATGGCCAATTTGTATATCCCTTGAAGCTGTTAATCACTTTATCTTTTTCCCTACAAATTTTTTATTTCTCTCCCATCTTCGTAGACATAATTTTCTTATATTTTAAGGGGAAAAAAGGTTTCATTACTACTTTTAATGTACTCTGCTAATTAAAGTGTTTTTCCTCGTCCAGTTGTGTATGTATGCTGGTTGTCACTTGTCTATGCATAAATGAGTTTCTATATGGGTAGTATGTGTTTTCTGCTTAAGTTAATTTTGAATGTTTATTTTAATAATACTGGTTTTGTTATGATAATTTTTTCCCCGACTAGTTTTCTTGCATCTTGTTCGACTAAAGCAATAGCTTGTAAATGACTTGTTATTGAAACCAGTGTTATTAAAATAAACATTTAAATGTTTGCTTTACTTTAAAATTACTACCTATGAATGAAAACACTACTGTGGTTGATTGTTGCATTACTTTTGCTTTTGCAGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGTTTGTTTTCCAGATCGATTAAACCTATCCAATAATACCACCATCCAACGAATTCTTCGGTTCAGTTGTGAAGTACAATATTACTTGTCTGATGACTGACCCGAATGTGAAATCTATAGTAGTAATCCCATCTTTTGTGAAATTACTGGTTTGTGGGTATAGATATATACCTTTATAGGAAGCAGGAGAGGAGCTGAGTTTCGCTCAAGTTGTCCTGCTGGCCTAATTCTTCTGCCTGATGTTGTTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGATTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCAAGAGTACTACCAAGATACAATCTTCTTCTGAGTCAGCTGATTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGATTAATTTTTTCTCCCGGAGGTTTTAGCACTTGCTTATTAGGATCATATACGTCTACTTACATGGTTTTGGCAGTTTAAAAGAGGCTAGTTTTTGGGGGTACGAAGAGTATTTATTTATTATTCCAAATATAAGAAAAGAAGTATAGGTTGGAAGCTCTAATCTTTGAGGTTATCATTTAGTTTTCTGGTGCTTTCTGAGTGACATTAGTGACTCTAGTACATAACATTCATTGAACTAGTTCCTGAATCATCAGTGACCATTTTTTGGAGGGAATGTCCCTTGAATTTTAATGCTTGCAAATTTTGGTTGATTTTGCTTACGATATCTGCGATGTGTTCTTCTCTAGCTTGTATTGTAGAATCAAACCTTTTTTGTTATGTTTGTTCTCCTGTGTTGTTTTGTATTTGTTTGATTATATTCATGGTCAGAATAATTGAATTGTTTTACATGATGGATTTTTTTAGGCTTATCATTAGGATGTGTATTCTCTGATTGTGACAGATGACCTT

mRNA sequence

GCGTGATTTGATCGGGCTAGATCTATTCAAACCCTAATTTTATTGTTTTGTTTTTGTTGGGTTGAAATCATGTTTTTCGAATTGATTTTTCAATTGATCATCTGTTCAAGTTGTTCTTCTCATCAATCTCGGTTCGTTCCGATCTAGCGGTAGGTTTTGGATCGGAATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTTCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCTGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCTGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCATGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTTCCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGCGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTGATGCCCCCTACGCCACCTTACACTGCTCAGTTTCCCCAGCCTGTTTTACCTTATGGGAATCCGATGCATCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCTACCGCCTTCAGTGTACTATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCTGTGACACGAATTTGATAATGGATGGATATCTAAGGTGCCGGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCAGTTTTTCTAGGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGATTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCAAGAGTACTACCAAGATACAATCTTCTTCTGAGTCAGCTGATTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGATTAATTTTTTCTCCCGGAGGTTTTAGCACTTGCTTATTAGGATCATATACGTCTACTTACATGGTTTTGGCAGTTTAAAAGAGGCTAGTTTTTGGGGGTACGAAGAGTATTTATTTATTATTCCAAATATAAGAAAAGAAGTATAGGTTGGAAGCTCTAATCTTTGAGGTTATCATTTAGTTTTCTGGTGCTTTCTGAGTGACATTAGTGACTCTAGTACATAACATTCATTGAACTAGTTCCTGAATCATCAGTGACCATTTTTTGGAGGGAATGTCCCTTGAATTTTAATGCTTGCAAATTTTGGTTGATTTTGCTTACGATATCTGCGATGTGTTCTTCTCTAGCTTGTATTGTAGAATCAAACCTTTTTTGTTATGTTTGTTCTCCTGTGTTGTTTTGTATTTGTTTGATTATATTCATGGTCAGAATAATTGAATTGTTTTACATGATGGATTTTTTTAGGCTTATCATTAGGATGTGTATTCTCTGATTGTGACAGATGACCTT

Coding sequence (CDS)

ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTTCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCTGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCTGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCATGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTTCCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGCGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTGATGCCCCCTACGCCACCTTACACTGCTCAGTTTCCCCAGCCTGTTTTACCTTATGGGAATCCGATGCATCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCTACCGCCTTCAGTGTACTATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCTGTGACACGAATTTGATAATGGATGGATATCTAAGGTGCCGGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCAGTTTTTCTAGGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGATTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCAAGAGTACTACCAAGATACAATCTTCTTCTGAGTCAGCTGATTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA

Protein sequence

MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTVSAPETPETPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLETYRGMPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDEGINQSTPSDTDPRNTKSTTKIQSSSESADSSQLTNGEVNQDVQTDI

Homology

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BLAST of CmaCh01G019850 vs. Swiss-Prot
Match: LRP1B_ARATH (La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-20
Identity = 122/410 (29.76%), Postives = 194/410 (47.32%), Query Frame = 1


Query: 43  SQSPLSSSSSFSTVSAPETPETPAPAPTSDFFASSEEGGPVMGA-DSWPDLAESAKASPK 102
           S SP + ++S    +A + P      P+S+   SS + GPVMGA +SWP L+ SA++S  
Sbjct: 56  SVSPPTGNNSSDYDNADKKPPPVWNMPSSN---SSSDVGPVMGAAESWPALSLSARSS-- 115

Query: 103 LAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPP 162
               +I  P   A+       S   P      ++  +   GSS+   +            
Sbjct: 116 ----SIKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSENSAVNNSQRK 175

Query: 163 PFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALH 222
           PF       S   +  + S+  PL   +  H +   G     NF +   N     N + +
Sbjct: 176 PFRRNNNTSSSSTS-SNVSNAAPLNTRDQNHSQRGGGSFGSGNFRNSQRN----RNSSSY 235

Query: 223 PRGNG-HYQNNRGGKQRDQDRGVYSN--ARDAHFRQHRP-----PTRGLMPPT-PPYTAQ 282
           PRG G H+ N R  +  +Q    + N   RD H +  R      P   + PP+ P  +AQ
Sbjct: 236 PRGEGLHHGNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQ 295

Query: 283 F-PQPVL-PYGNPMHPPEF---VYVPTWPLETYRGM--PFMLPPSVYYSAVDPTLSASLV 342
           +   P L  YG P+  P++   V++P  P     G+  PF L P +Y+   D  L   ++
Sbjct: 296 YMAAPQLGSYGGPIIYPDYAQHVFMPH-PSPDPMGLVGPFPLQP-MYFRNFDAILYNKIL 355

Query: 343 KQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLE 402
            Q+EYYF   NL  D +LR +M+D+GWVP+ +IA+F R+  LT NIQ I+E+LR+S V+E
Sbjct: 356 TQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVE 415

Query: 403 VQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDE 436
           +Q   +R+R +W K+++     R   +      S++ SL +  + + L E
Sbjct: 416 IQGETLRRRGDWDKYLLPREPSR---SGPAAGASNNASLVSQIESMTLSE 446

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BLAST of CmaCh01G019850 vs. Swiss-Prot
Match: LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.9e-20
Identity = 139/518 (26.83%), Postives = 216/518 (41.70%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELI-------------SQSPLSSSS 64
           NH SP+ +  +       P +     W  +VRGE E I             S++P+   +
Sbjct: 22  NHGSPTASVAQSPRR---PSRQVSSPWTQIVRGESEPIAAAAAVAGPSSPQSRAPIEPIA 81

Query: 65  SFSTVSAPETPETPAPAPTSDFFASSEEG--------------------GPVMGADSWPD 124
           S S V+AP        A   D  + +  G                    GPVMGA SWP 
Sbjct: 82  SVS-VAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVGPVMGASSWPA 141

Query: 125 LAESAKA------SPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSM 184
           L+E+ KA      S  L     VP    A+++      + +  V   + + R+    +  
Sbjct: 142 LSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQAGRANPNPTPN 201

Query: 185 GGPARGFYRPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNF 244
               R F +              P +       PSH  P  R  N+      GF  Q + 
Sbjct: 202 HSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSH-NPSPRGQNQK----NGFASQNHG 261

Query: 245 VSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYS-------NARDAHFRQHRPP 304
            ++ P+         +   NG++  + GG+ R+Q+ G  +       N R+ + +  R  
Sbjct: 262 GTENPS-----QRDSYRNQNGNHHQSHGGR-RNQEHGNQNWTFQRSFNGREGNAQSQRGT 321

Query: 305 TRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLET--YRGMPFMLP----PSVY 364
              +  P+P       QP+  +      P  +  PT   ++  Y  MP+M P    P  +
Sbjct: 322 PAFVRHPSPTV-----QPIPQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFF 381

Query: 365 YSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQ 424
           Y   DP L   L KQI+YYF D NLI D YLR  M+++G+VP+ ++A F +V  LT NIQ
Sbjct: 382 YHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQ 441

Query: 425 WIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDH-DSLATSFQGV 467
            I+E+L+ S  +EVQ + IRKR+ W+ W+     LR + T S P   D  D++A     +
Sbjct: 442 QIVEALQNSPHVEVQGDFIRKRDNWQNWV-----LRRNPTGSGPQSVDRADAVAKRLGNL 501

[Close]

BLAST of CmaCh01G019850 vs. Swiss-Prot
Match: LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-18
Identity = 131/433 (30.25%), Postives = 184/433 (42.49%), Query Frame = 1


Query: 64  TPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPS 123
           T +P  T D         PVMGA SWP LA++A+  P+   P    P   + N   S P 
Sbjct: 31  TTSPVETID--------APVMGAHSWPALADAAQ-QPRPKNPPAPAPAPPSKNIPTSIP- 90

Query: 124 LKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPP------PPPPPFPVFQIPC---SMMP 183
           +  P V  Q  S+  G        P+    +P P      PPPPP+ V  +P       P
Sbjct: 91  IPTPAVTGQAKSKGGGKANPGHKNPSGRHSKPGPRSNQNGPPPPPYLVHAVPYHPPPFPP 150

Query: 184 AIPDPSHGEPLFRSNNRHPRAI-------AGFVPQTNFVSDYPNFFPRGNLALHPRGN-- 243
            +P P    P F      P  +       +G   Q    S  P   P       P+G+  
Sbjct: 151 MVPLPHAAGPDFPYAPYPPYPVPVPPVTESGNEKQVQ-ASPLPPVLPA------PQGDPG 210

Query: 244 GHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTA----QFPQPVLPYG 303
             + + RG   R+  +G    A   +F   RPP    M P P +       FP PV  Y 
Sbjct: 211 KPWPHQRGFDPRNMPQG----AGPRNF--GRPP---FMGPAPGFLVGPGPGFPGPV--YY 270

Query: 304 NPMHPPEFV---YVPTW-PLETYRGMPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNL 363
            P  PP  +   Y P + P    +G P + P  +        L   ++KQ+EYYF D NL
Sbjct: 271 LPGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKL-------DLRDRVLKQVEYYFSDENL 330

Query: 364 IMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEW 423
             D YL   MD++GWVP  +IA F RVK +T ++ +I+ +L  S  +EVQ ++IRKR++W
Sbjct: 331 ENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKW 390

Query: 424 KKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDEGINQSTPSDTDPRNTKSTTKIQ 471
             WI  S   +   ++ T    D DS  +      +  G N   PS    + +   T   
Sbjct: 391 SDWIPAS---KKSTSAETIGDGDKDSPKS------ITSGDNFGNPS----KGSSKPTVSD 415

[Close]

BLAST of CmaCh01G019850 vs. Swiss-Prot
Match: LAR1B_HUMAN (La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-15
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 313 YSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQ 372
           Y   +  L   + +QIEYYF   NL  D +LR +MD+QG++PISLIA F RV+ LTTN+ 
Sbjct: 208 YPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLN 267

Query: 373 WIIESLRTSTVLEVQDNRIRKRNEWKKWII 403
            I+E+L+ ST +E+ D ++RK+ E +KW I
Sbjct: 268 LILEALKDSTEVEIVDEKMRKKIEPEKWPI 297

[Close]

BLAST of CmaCh01G019850 vs. Swiss-Prot
Match: LARP1_MOUSE (La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-13
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 313 YSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQ 372
           YS     L   + +QIEYYF   NL  D +LR +MD  G++PI+LIASF RV+ LTT+I 
Sbjct: 371 YSMDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDIS 430

Query: 373 WIIESLRTSTVLEVQDNRIRKRNEWKKW 401
            I  +L+ S V+E+ + ++R+R E +KW
Sbjct: 431 LIFAALKDSKVVEMVEEKVRRREEPEKW 458

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BLAST of CmaCh01G019850 vs. TrEMBL
Match: A0A0A0LH68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 6.3e-166
Identity = 343/533 (64.35%), Postives = 379/533 (71.11%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTY--EFPPKNHLCAWAAVVRGEPELIS---QSPLSSSSSFSTVSAP 64
           NHRSPS TS  GDNT   EF  KN    WA VVRGEPE IS   QS LSSSSS  +  A 
Sbjct: 10  NHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAV 69

Query: 65  ETPETPAPA-PTSDFFASSE------------------------EGGPVMGADSWPDLAE 124
              ETPAPA P SD F SSE                        EGG VMGADSWP LAE
Sbjct: 70  SATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMGADSWPALAE 129

Query: 125 SAKASPKLA-----------------GPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRR 184
           SA+ASPKL                  GP  VPPQRQATNNAKS+P+LK+PVVAR+ S R 
Sbjct: 130 SARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVARRSSRRG 189

Query: 185 SGGGGSSMGGPARGFYRPPPPPPPP----FPVFQIP----CSMMPAIPDPSHGEPLFRSN 244
            GGGGSS+GGP  G+YRPPPPPPPP    FPVFQ+     C+M+PAIPDPS GEPLFRS 
Sbjct: 190 GGGGGSSVGGPRGGYYRPPPPPPPPPPPPFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSP 249

Query: 245 NRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARD 304
           N  PRA+AGFVPQ NF +D+ NFFPRGN  LHPRG+ HY NNRGGK R QDRG+Y NARD
Sbjct: 250 NWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGK-RGQDRGIYFNARD 309

Query: 305 AHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLETYRG-MPFMLP 364
           AHF+QHRP TRG M P PP+T QFPQ V P+ NPM  PEFVYVPT PLE YRG +PFM  
Sbjct: 310 AHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPR 369

Query: 365 PSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLT 424
           P++ Y  VDPTLSAS+VKQIEYYF D NL+ D YLR +MDDQGWVPISLIA+F  V +LT
Sbjct: 370 PAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLT 429

Query: 425 TNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 482
            NIQWI+ESLRTST +EVQD +IR+RNEWKKW   SN  RTDL SS  SGS HDSLATSF
Sbjct: 430 NNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSF 489

[Close]

BLAST of CmaCh01G019850 vs. TrEMBL
Match: M5Y7L2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018923mg PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.6e-84
Identity = 223/539 (41.37%), Postives = 294/539 (54.55%), Query Frame = 1


Query: 4   VNHRSPSPTSF-------KGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTV 63
           VN +S  P+ +       + ++ ++ PP +   + +++    PE   Q+P S  S  S  
Sbjct: 14  VNRKSSLPSPWAKVVRGAEPESVHQSPPSSS-SSLSSLGTSAPE---QTPFSDCSVSSKA 73

Query: 64  SAPETPETPAPAPTSDFFASSEEGG-------------------------PVMGADSWPD 123
           +    P  P P   S   A    G                           VMGA SWP 
Sbjct: 74  ARSSPPPLPLPTADSSSAAEGSNGNNGNAARPKKPAWNKPANDDVEVSPTTVMGAVSWPA 133

Query: 124 LAESAKASPKLAG----------------------PTIVPP---QRQATNNAKSDPSLKH 183
           L+ES +ASPKL                        P I      +R +TNNA  + +  +
Sbjct: 134 LSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNN 193

Query: 184 PVVARQRSSRRSGGGGSSMGGPARGFYRPP-PPPPPPFPVFQIPCS----MMPAIPDPSH 243
              ARQR S+R GG  +  G    GF  PP PPPPPPFPVF I  +    ++P +PDPS 
Sbjct: 194 AFPARQRPSKRGGGSSTGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSS 253

Query: 244 GEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDR 303
            +P FR N+   R + GFV Q++ V+D+ N   RGN   HPRG+G Y NN GGK RDQDR
Sbjct: 254 RDPSFRGNSWDVRPVGGFVTQSHQVNDHRNNSRRGNFGPHPRGDGPYHNNHGGK-RDQDR 313

Query: 304 GVYSNARDAHFRQHRPPTRGLMPPTPPYTAQF-PQPVLPYGNPM-HPPEFVYVPTWPLET 363
           G Y NARDAH  QHR P RGL+ P PP TA F PQP  P+ NPM  P EFVY+PT PLE 
Sbjct: 314 GNYMNARDAHMHQHRAPPRGLVRPAPPNTAAFAPQPARPFANPMGFPGEFVYIPTLPLEP 373

Query: 364 YRGMPFMLP---PSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPIS 423
            RGMPF+     P+++    +  L + +V QI+YYF D NLI D +LR  MD QGWVPIS
Sbjct: 374 MRGMPFISQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPIS 433

Query: 424 LIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTP 476
           LIA+F RVK+LTTNIQ I++SLR S+++EV D+++R+ NEW KWI   +QL  +  SS+P
Sbjct: 434 LIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSP 493

[Close]

BLAST of CmaCh01G019850 vs. TrEMBL
Match: K7KHP9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G021900 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.3e-80
Identity = 217/516 (42.05%), Postives = 295/516 (57.17%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRG-EPELISQSP-LSSSSSFSTVS----- 64
           NH SP+  +   D +  FP KN    WA VVRG + E   QSP  SSSSSFS++      
Sbjct: 11  NHYSPTAATAAADTSNNFPRKNLPSPWAQVVRGADAEPNHQSPPSSSSSSFSSLDSINSN 70

Query: 65  --APETPETPA-PAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVP----- 124
             A +T +T   PA          E GPVMGA SWPDL+ES K + KL   + V      
Sbjct: 71  GPAVQTSDTTVKPAWKKPESNGVSEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADE 130

Query: 125 ---------------PQRQATNNAKSDPS--LKHPVVARQRSSRRSGGG-GSSMG-GPAR 184
                          PQ+QA  NA   P+  + + +  RQRS ++ GG  G ++G GP +
Sbjct: 131 ESLTTTPQDPVNSDSPQKQAIGNANPSPTPAMNYGMANRQRSMKQRGGSNGYNVGSGPVQ 190

Query: 185 GFYR------PPPPPPPPFPVFQIP----CSMMPAIPDPSHGEPLFRSNNRHPRAI-AGF 244
             +       PPPPPPPPFPV  +P       +P +P P+  +P +R+NN   R    GF
Sbjct: 191 NNFSGATQNLPPPPPPPPFPVLPMPPRTFAHGIPGVPVPTPRDP-YRNNNWDARPPHGGF 250

Query: 245 VPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPT 304
           +P    +S++ +   RGN   HPRG+G Y N+ G + RDQDRG Y+N RDAH  Q R P 
Sbjct: 251 MPP---MSEHRSPSRRGNAGHHPRGDGPYHNSYGSR-RDQDRGGYANTRDAHVNQQRMPP 310

Query: 305 RGLMPPTPPYTAQF--PQPVLPYGNPMHPPEFVYVPTWPLETYRGMPFML---PPSVYYS 364
           RGLM P PP  A F  PQP+ P+ NP   PEF Y PT   E + GMPF     PP++++ 
Sbjct: 311 RGLMRPPPPNPAPFMGPQPMRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFP 370

Query: 365 AVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWI 424
             +  L+ ++  QI+YYF D NL+ D YLR  MD+QGWVPI+LIASF RV++LT+NI+ I
Sbjct: 371 VAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPITLIASFPRVRSLTSNIKLI 430

Query: 425 IESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLD 471
           ++SLRTSTV+EVQ +++R+ NEW KW + S QLR +  S +PSGS  ++LA  F+ + +D
Sbjct: 431 LDSLRTSTVVEVQGDKLRRCNEWMKW-LPSAQLRANSGSISPSGSSSNNLAADFEKITVD 490

[Close]

BLAST of CmaCh01G019850 vs. TrEMBL
Match: A0A067GYY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.0e-80
Identity = 212/497 (42.66%), Postives = 282/497 (56.74%), Query Frame = 1


Query: 3   TVNHRSPSPTSFKGDNTYEFP-PKNHLCAWAAVVRGEPELISQSPLSSSSSFSTVSAPET 62
           TVNH   SP+      T   P P   +    AV          +P+++ SS +       
Sbjct: 52  TVNHSQSSPSPPL--TTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNAAR 111

Query: 63  PETPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGP---------------T 122
           P+  A    S+      E GPVMGA SWP L+ES K SPK +                 T
Sbjct: 112 PKKLAWNKPSNGVV---EVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGT 171

Query: 123 IVP-----PQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPA--RGFYRPPPPP 182
            VP     PQ+ +  NA  + +    + ARQR  R  GG  ++  GPA  R    PPPPP
Sbjct: 172 QVPLIPHLPQKVSNANANPNSNANRTMPARQRLKRSGGGVSNAGSGPAQTRPTQPPPPPP 231

Query: 183 PPPFPVFQIP----CSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPR 242
           PPPFPVF +P     +++ A+PDPS  EPL+R +N   R + GFV Q++ ++D  N   R
Sbjct: 232 PPPFPVFPMPPNSFANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRR 291

Query: 243 GNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTAQF-- 302
           GN     RG+G+Y NN GG+  DQDRG YSNARDAH +  R P RG + P PP  A F  
Sbjct: 292 GNYG--QRGDGNYNNNFGGRH-DQDRGNYSNARDAHVQPQRGPPRGFVRPAPPNAAAFAP 351

Query: 303 PQPVLPYGNPMHPPEFVYVPTWPLET-----YRGMPFMLPPS-VYYSAVDPTLSASLVKQ 362
           PQP+ P+ NPM  PEF+Y+P  P+E        GMP  +PP+ V     +P+L+A L+ Q
Sbjct: 352 PQPMRPFPNPMGFPEFIYIPPMPVEAAALRGVTGMPPFIPPAPVLMPVPEPSLAAMLIHQ 411

Query: 363 IEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQ 422
           I+YYF D NL+ D +L+  MDDQGWVPI+LIASF RVKNLT+NIQ I++SLRTSTV+EVQ
Sbjct: 412 IDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQ 471

Query: 423 DNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDEG-INQSTPSDTD 464
           D+R+R+RNEW KWI    ++ T+   S+P+GS  D LA SFQ + + EG +NQ + +   
Sbjct: 472 DDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNA 531

[Close]

BLAST of CmaCh01G019850 vs. TrEMBL
Match: V4TFJ5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000767mg PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.5e-79
Identity = 201/458 (43.89%), Postives = 269/458 (58.73%), Query Frame = 1


Query: 50  SSSFSTVSAPETP--ETPAPAPTSDFFASSE----------------EGGPVMGADSWPD 109
           S S +  SAP +P  + P  A +SD    +                 E GPVMGA SWP 
Sbjct: 77  SPSKAVASAPSSPPPDNPIAAGSSDADKGNAARPKKLAWNKPSNGVVEVGPVMGAASWPA 136

Query: 110 LAESAKASPK-----------LAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGG 169
           L+ES K SPK           +A  ++   Q+ +  NA  + +    + ARQR  R  GG
Sbjct: 137 LSESTKPSPKSSSADSSSSKSVADGSVSGTQKVSNANANPNSNANRTMPARQRLKRSGGG 196

Query: 170 GGSSMGGPA--RGFYRPPPPPPPPFPVFQIP----CSMMPAIPDPSHGEPLFRSNNRHPR 229
             ++  GP   R    PPPPPPPPFPVF +P     +++ A+PDPS  EPL+R +N   R
Sbjct: 197 VSNAGSGPTQTRPTQPPPPPPPPPFPVFPMPPNSFANLVTAMPDPSPREPLYRGSNWDAR 256

Query: 230 AIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQ 289
            + GFV Q++ ++D  N   RGN     RG+G+Y NN GG+  DQDRG YSNARDAH + 
Sbjct: 257 PVGGFVSQSHPMNDQRNSSRRGNYG--QRGDGNYNNNFGGRH-DQDRGNYSNARDAHVQP 316

Query: 290 HRPPTRGLMPPTPPYTAQF--PQPVLPYGNPMHPPEFVYVPTWPLET-----YRGMPFML 349
            R P RG + P PP  A F  PQP+ P+ NPM  PEF+Y+P  P+E        GMP  +
Sbjct: 317 QRGPPRGFVRPAPPNAAAFAPPQPMRPFPNPMGFPEFIYIPPMPVEAAALRGVTGMPPFI 376

Query: 350 PPS-VYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKN 409
           PP+ V     +P+L+A L+ QI+YYF D NL+ D +L+  MDDQGWVPI+LIASF RVKN
Sbjct: 377 PPAPVLMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKN 436

Query: 410 LTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLAT 464
           LT+NIQ I++SLRTSTV+EVQD+R+R+RNEW KWI    ++ T+   S+P+GS  D LA 
Sbjct: 437 LTSNIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAP 496

[Close]

BLAST of CmaCh01G019850 vs. TAIR10
Match: AT5G66100.1 (AT5G66100.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-21
Identity = 122/410 (29.76%), Postives = 194/410 (47.32%), Query Frame = 1


Query: 43  SQSPLSSSSSFSTVSAPETPETPAPAPTSDFFASSEEGGPVMGA-DSWPDLAESAKASPK 102
           S SP + ++S    +A + P      P+S+   SS + GPVMGA +SWP L+ SA++S  
Sbjct: 57  SVSPPTGNNSSDYDNADKKPPPVWNMPSSN---SSSDVGPVMGAAESWPALSLSARSS-- 116

Query: 103 LAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPP 162
               +I  P   A+       S   P      ++  +   GSS+   +            
Sbjct: 117 ----SIKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSENSAVNNSQRK 176

Query: 163 PFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALH 222
           PF       S   +  + S+  PL   +  H +   G     NF +   N     N + +
Sbjct: 177 PFRRNNNTSSSSTS-SNVSNAAPLNTRDQNHSQRGGGSFGSGNFRNSQRN----RNSSSY 236

Query: 223 PRGNG-HYQNNRGGKQRDQDRGVYSN--ARDAHFRQHRP-----PTRGLMPPT-PPYTAQ 282
           PRG G H+ N R  +  +Q    + N   RD H +  R      P   + PP+ P  +AQ
Sbjct: 237 PRGEGLHHGNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQ 296

Query: 283 F-PQPVL-PYGNPMHPPEF---VYVPTWPLETYRGM--PFMLPPSVYYSAVDPTLSASLV 342
           +   P L  YG P+  P++   V++P  P     G+  PF L P +Y+   D  L   ++
Sbjct: 297 YMAAPQLGSYGGPIIYPDYAQHVFMPH-PSPDPMGLVGPFPLQP-MYFRNFDAILYNKIL 356

Query: 343 KQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLE 402
            Q+EYYF   NL  D +LR +M+D+GWVP+ +IA+F R+  LT NIQ I+E+LR+S V+E
Sbjct: 357 TQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVE 416

Query: 403 VQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDE 436
           +Q   +R+R +W K+++     R   +      S++ SL +  + + L E
Sbjct: 417 IQGETLRRRGDWDKYLLPREPSR---SGPAAGASNNASLVSQIESMTLSE 447

[Close]

BLAST of CmaCh01G019850 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-21
Identity = 139/518 (26.83%), Postives = 216/518 (41.70%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELI-------------SQSPLSSSS 64
           NH SP+ +  +       P +     W  +VRGE E I             S++P+   +
Sbjct: 22  NHGSPTASVAQSPRR---PSRQVSSPWTQIVRGESEPIAAAAAVAGPSSPQSRAPIEPIA 81

Query: 65  SFSTVSAPETPETPAPAPTSDFFASSEEG--------------------GPVMGADSWPD 124
           S S V+AP        A   D  + +  G                    GPVMGA SWP 
Sbjct: 82  SVS-VAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVGPVMGASSWPA 141

Query: 125 LAESAKA------SPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSM 184
           L+E+ KA      S  L     VP    A+++      + +  V   + + R+    +  
Sbjct: 142 LSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQAGRANPNPTPN 201

Query: 185 GGPARGFYRPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNF 244
               R F +              P +       PSH  P  R  N+      GF  Q + 
Sbjct: 202 HSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSH-NPSPRGQNQK----NGFASQNHG 261

Query: 245 VSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYS-------NARDAHFRQHRPP 304
            ++ P+         +   NG++  + GG+ R+Q+ G  +       N R+ + +  R  
Sbjct: 262 GTENPS-----QRDSYRNQNGNHHQSHGGR-RNQEHGNQNWTFQRSFNGREGNAQSQRGT 321

Query: 305 TRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLET--YRGMPFMLP----PSVY 364
              +  P+P       QP+  +      P  +  PT   ++  Y  MP+M P    P  +
Sbjct: 322 PAFVRHPSPTV-----QPIPQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFF 381

Query: 365 YSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQ 424
           Y   DP L   L KQI+YYF D NLI D YLR  M+++G+VP+ ++A F +V  LT NIQ
Sbjct: 382 YHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQ 441

Query: 425 WIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDH-DSLATSFQGV 467
            I+E+L+ S  +EVQ + IRKR+ W+ W+     LR + T S P   D  D++A     +
Sbjct: 442 QIVEALQNSPHVEVQGDFIRKRDNWQNWV-----LRRNPTGSGPQSVDRADAVAKRLGNL 501

[Close]

BLAST of CmaCh01G019850 vs. TAIR10
Match: AT5G21160.3 (AT5G21160.3 LA RNA-binding protein)

HSP 1 Score: 95.5 bits (236), Expect = 9.4e-20
Identity = 131/433 (30.25%), Postives = 184/433 (42.49%), Query Frame = 1


Query: 64  TPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPS 123
           T +P  T D         PVMGA SWP LA++A+  P+   P    P   + N   S P 
Sbjct: 31  TTSPVETID--------APVMGAHSWPALADAAQ-QPRPKNPPAPAPAPPSKNIPTSIP- 90

Query: 124 LKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPP------PPPPPFPVFQIPC---SMMP 183
           +  P V  Q  S+  G        P+    +P P      PPPPP+ V  +P       P
Sbjct: 91  IPTPAVTGQAKSKGGGKANPGHKNPSGRHSKPGPRSNQNGPPPPPYLVHAVPYHPPPFPP 150

Query: 184 AIPDPSHGEPLFRSNNRHPRAI-------AGFVPQTNFVSDYPNFFPRGNLALHPRGN-- 243
            +P P    P F      P  +       +G   Q    S  P   P       P+G+  
Sbjct: 151 MVPLPHAAGPDFPYAPYPPYPVPVPPVTESGNEKQVQ-ASPLPPVLPA------PQGDPG 210

Query: 244 GHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTA----QFPQPVLPYG 303
             + + RG   R+  +G    A   +F   RPP    M P P +       FP PV  Y 
Sbjct: 211 KPWPHQRGFDPRNMPQG----AGPRNF--GRPP---FMGPAPGFLVGPGPGFPGPV--YY 270

Query: 304 NPMHPPEFV---YVPTW-PLETYRGMPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNL 363
            P  PP  +   Y P + P    +G P + P  +        L   ++KQ+EYYF D NL
Sbjct: 271 LPGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKL-------DLRDRVLKQVEYYFSDENL 330

Query: 364 IMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEW 423
             D YL   MD++GWVP  +IA F RVK +T ++ +I+ +L  S  +EVQ ++IRKR++W
Sbjct: 331 ENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKW 390

Query: 424 KKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDEGINQSTPSDTDPRNTKSTTKIQ 471
             WI  S   +   ++ T    D DS  +      +  G N   PS    + +   T   
Sbjct: 391 SDWIPAS---KKSTSAETIGDGDKDSPKS------ITSGDNFGNPS----KGSSKPTVSD 415

[Close]

BLAST of CmaCh01G019850 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-06
Identity = 33/111 (29.73%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 320 LSASLVKQIEYYFCDTNLIMDGYLRCRM--DDQGWVPISLIASFSRVKNLTTNIQWIIES 379
           L+  +++Q+EYYF D NL  D +L   M  + +G+VPIS IA+F ++K LT +   I+ +
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 380 LRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 429
           L+ S+ L V  +  + +       I   ++ T L  + P    ++++   F
Sbjct: 163 LKESSFLVVSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIF 213

[Close]

BLAST of CmaCh01G019850 vs. NCBI nr
Match: gi|449437412|ref|XP_004136486.1| (PREDICTED: la-related protein 1C [Cucumis sativus])

HSP 1 Score: 592.0 bits (1525), Expect = 9.1e-166
Identity = 343/533 (64.35%), Postives = 379/533 (71.11%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTY--EFPPKNHLCAWAAVVRGEPELIS---QSPLSSSSSFSTVSAP 64
           NHRSPS TS  GDNT   EF  KN    WA VVRGEPE IS   QS LSSSSS  +  A 
Sbjct: 10  NHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAV 69

Query: 65  ETPETPAPA-PTSDFFASSE------------------------EGGPVMGADSWPDLAE 124
              ETPAPA P SD F SSE                        EGG VMGADSWP LAE
Sbjct: 70  SATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMGADSWPALAE 129

Query: 125 SAKASPKLA-----------------GPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRR 184
           SA+ASPKL                  GP  VPPQRQATNNAKS+P+LK+PVVAR+ S R 
Sbjct: 130 SARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVARRSSRRG 189

Query: 185 SGGGGSSMGGPARGFYRPPPPPPPP----FPVFQIP----CSMMPAIPDPSHGEPLFRSN 244
            GGGGSS+GGP  G+YRPPPPPPPP    FPVFQ+     C+M+PAIPDPS GEPLFRS 
Sbjct: 190 GGGGGSSVGGPRGGYYRPPPPPPPPPPPPFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSP 249

Query: 245 NRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARD 304
           N  PRA+AGFVPQ NF +D+ NFFPRGN  LHPRG+ HY NNRGGK R QDRG+Y NARD
Sbjct: 250 NWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGK-RGQDRGIYFNARD 309

Query: 305 AHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLETYRG-MPFMLP 364
           AHF+QHRP TRG M P PP+T QFPQ V P+ NPM  PEFVYVPT PLE YRG +PFM  
Sbjct: 310 AHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPR 369

Query: 365 PSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLT 424
           P++ Y  VDPTLSAS+VKQIEYYF D NL+ D YLR +MDDQGWVPISLIA+F  V +LT
Sbjct: 370 PAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLT 429

Query: 425 TNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 482
            NIQWI+ESLRTST +EVQD +IR+RNEWKKW   SN  RTDL SS  SGS HDSLATSF
Sbjct: 430 NNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSF 489

[Close]

BLAST of CmaCh01G019850 vs. NCBI nr
Match: gi|659132939|ref|XP_008466467.1| (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 579.3 bits (1492), Expect = 6.1e-162
Identity = 344/540 (63.70%), Postives = 381/540 (70.56%), Query Frame = 1


Query: 5   NHRSPSPTSFKGDNTY--EFPPKNHLCAWAAVVRGEPELIS---QSPLSSSSSFSTVSAP 64
           N RSPS TSF GDNT   EF  KN    WA VVRGEPE IS   QS LSSSSS  +  A 
Sbjct: 10  NRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAV 69

Query: 65  ETPETPAPA-PTSDFFASSE--------------------------EGGPVMGADSWPDL 124
              ETPAPA P SD F SSE                          EGG VMGADSWP L
Sbjct: 70  SATETPAPASPPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSVMGADSWPAL 129

Query: 125 AESAKASPKLA-----------------GPTIVPPQRQATNNAKSDPSLKHPVVARQRSS 184
           AESA+ASPKL                  GP  VPPQRQATNNAKS+P+LK+PVV R RSS
Sbjct: 130 AESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVPRLRSS 189

Query: 185 RRSGGGG-SSMGGPARG-FYRPPPPPPPP-----FPVFQIP----CSMMPAIPDPSHGEP 244
           RR GGGG SS+GGPARG FYRPPPPPPPP     FP+FQ+P    C+M+PAIPDPS GEP
Sbjct: 190 RRGGGGGGSSVGGPARGGFYRPPPPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEP 249

Query: 245 LFRSNNRH--PRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRG 304
            FRS N +  PRA+AGFVPQ NF +D+ NFFPRG+LA HPR +GHY NNRGGK R QDRG
Sbjct: 250 PFRSLNPNWDPRAVAGFVPQLNFGTDHRNFFPRGHLAFHPRVDGHYHNNRGGK-RGQDRG 309

Query: 305 VYSNARDAHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLETYRG 364
           +Y NARDAHF+QHRP TRG M P PP+  QFPQ V P+ NPM  PEFVYVPT PLE YRG
Sbjct: 310 IYPNARDAHFQQHRPHTRGFMRPLPPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRG 369

Query: 365 -MPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASF 424
            MPFM  P++ Y  VDP LSAS++KQIEYYF D NL+ D YLR +MDDQGWVPISLIA+F
Sbjct: 370 SMPFMPRPAMNYPTVDPILSASILKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATF 429

Query: 425 SRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDH 482
             V +LT NIQWIIESLR ST +EVQDN+IR+RNEWKKW   SN  RTDL SS  SGS H
Sbjct: 430 PMVLSLTNNIQWIIESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSH 489

[Close]

BLAST of CmaCh01G019850 vs. NCBI nr
Match: gi|645228928|ref|XP_008221222.1| (PREDICTED: la-related protein 1C-like [Prunus mume])

HSP 1 Score: 338.2 bits (866), Expect = 2.4e-89
Identity = 233/525 (44.38%), Postives = 297/525 (56.57%), Query Frame = 1


Query: 31  WAAVVRG-EPELISQSPLSSSSSFSTV--SAPE-TP--------------ETPAPAPTSD 90
           WA VVRG EPE + QSP SSSSS S++  SAPE TP                P P PT+D
Sbjct: 26  WAKVVRGAEPEAVHQSPPSSSSSLSSLGTSAPEQTPFSDCSVSSKAARSSPPPLPLPTAD 85

Query: 91  FFASSE-------------------------EGGP--VMGADSWPDLAESAKASPKL--- 150
             +++E                         E  P  VMGA SWP L+ES +ASPKL   
Sbjct: 86  GLSAAEGSNGNNGNAARPKKPAWNKPANDVVEVSPTTVMGAVSWPALSESTRASPKLPAD 145

Query: 151 -------------------AGPTIV---PPQRQATNNAKSDPSLKHPVVARQRSSRRSGG 210
                                P +      +R +TNNA  + +  +   ARQR S+R GG
Sbjct: 146 SSSKTVSDATVTHGSISVSQAPVVTHSPNSKRHSTNNASPNSTSNNAFPARQRPSKRGGG 205

Query: 211 GGSSMGGPARGFYRPP-PPPPPPFPVFQI----PCSMMPAIPDPSHGEPLFRSNNRHPRA 270
           G +  G    GF  PP PPPPPPFPVF I      +++P +PDPS  +P FR N+   R 
Sbjct: 206 GSTGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLLPTMPDPSSRDPSFRGNSWDVRP 265

Query: 271 IAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQH 330
           + GFVPQ++ V+D+     RGN   HPRG+G Y NN GGK RDQDRG Y NARDAH  QH
Sbjct: 266 VGGFVPQSHQVNDHRTNSRRGNFGPHPRGDGSYHNNHGGK-RDQDRGNYMNARDAHMHQH 325

Query: 331 RPPTRGLMPPTPPYTAQF-PQPVLPYGNPM-HPPEFVYVPTWPLETYRGMPFMLP---PS 390
           R P RGL+ P PP TA F PQP  P+ NPM  P EFVY+PT PLE  RGMPF+     P+
Sbjct: 326 RAPPRGLVRPAPPNTAAFPPQPARPFANPMGFPGEFVYIPTLPLEPMRGMPFISQAPHPA 385

Query: 391 VYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTN 450
           ++    +  L + +V QI+YYF D NLI D +LR  MD QGWVPISLIA+F RVK+LTTN
Sbjct: 386 MFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPISLIANFPRVKSLTTN 445

Query: 451 IQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQG 476
           IQ I++SLR S+++EV D+++R+ NEW KWI   +QL  +  SS P    H++LATSF+ 
Sbjct: 446 IQLILDSLRGSSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSLPGVLSHNTLATSFEK 505

[Close]

BLAST of CmaCh01G019850 vs. NCBI nr
Match: gi|596293936|ref|XP_007226751.1| (hypothetical protein PRUPE_ppa018923mg [Prunus persica])

HSP 1 Score: 320.5 bits (820), Expect = 5.1e-84
Identity = 223/539 (41.37%), Postives = 294/539 (54.55%), Query Frame = 1


Query: 4   VNHRSPSPTSF-------KGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTV 63
           VN +S  P+ +       + ++ ++ PP +   + +++    PE   Q+P S  S  S  
Sbjct: 14  VNRKSSLPSPWAKVVRGAEPESVHQSPPSSS-SSLSSLGTSAPE---QTPFSDCSVSSKA 73

Query: 64  SAPETPETPAPAPTSDFFASSEEGG-------------------------PVMGADSWPD 123
           +    P  P P   S   A    G                           VMGA SWP 
Sbjct: 74  ARSSPPPLPLPTADSSSAAEGSNGNNGNAARPKKPAWNKPANDDVEVSPTTVMGAVSWPA 133

Query: 124 LAESAKASPKLAG----------------------PTIVPP---QRQATNNAKSDPSLKH 183
           L+ES +ASPKL                        P I      +R +TNNA  + +  +
Sbjct: 134 LSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNNASPNSTSNN 193

Query: 184 PVVARQRSSRRSGGGGSSMGGPARGFYRPP-PPPPPPFPVFQIPCS----MMPAIPDPSH 243
              ARQR S+R GG  +  G    GF  PP PPPPPPFPVF I  +    ++P +PDPS 
Sbjct: 194 AFPARQRPSKRGGGSSTGGGHAHSGFGHPPTPPPPPPFPVFPILPNGYGNLVPTMPDPSS 253

Query: 244 GEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDR 303
            +P FR N+   R + GFV Q++ V+D+ N   RGN   HPRG+G Y NN GGK RDQDR
Sbjct: 254 RDPSFRGNSWDVRPVGGFVTQSHQVNDHRNNSRRGNFGPHPRGDGPYHNNHGGK-RDQDR 313

Query: 304 GVYSNARDAHFRQHRPPTRGLMPPTPPYTAQF-PQPVLPYGNPM-HPPEFVYVPTWPLET 363
           G Y NARDAH  QHR P RGL+ P PP TA F PQP  P+ NPM  P EFVY+PT PLE 
Sbjct: 314 GNYMNARDAHMHQHRAPPRGLVRPAPPNTAAFAPQPARPFANPMGFPGEFVYIPTLPLEP 373

Query: 364 YRGMPFMLP---PSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPIS 423
            RGMPF+     P+++    +  L + +V QI+YYF D NLI D +LR  MD QGWVPIS
Sbjct: 374 MRGMPFISQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRSNMDVQGWVPIS 433

Query: 424 LIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTP 476
           LIA+F RVK+LTTNIQ I++SLR S+++EV D+++R+ NEW KWI   +QL  +  SS+P
Sbjct: 434 LIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGSQLPFESGSSSP 493

[Close]

BLAST of CmaCh01G019850 vs. NCBI nr
Match: gi|470113445|ref|XP_004292934.1| (PREDICTED: la-related protein 1C-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 224/523 (42.83%), Postives = 297/523 (56.79%), Query Frame = 1


Query: 3   TVNHRSP-SPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTVSAPET 62
           T NH+SP SP       +   P +N   A AA  R  P      P  +SS+ +   + + 
Sbjct: 46  TPNHQSPPSPPP----PSTSVPEQNPSSATAATARSSPS--PPPPADASSAAAAAESADG 105

Query: 63  PETPA-----PA---PTSDFFASSEEGGPVMGADSWPDLAESAKASPKLA---------- 122
               A     PA   P+ D    + E GPVMGA +WP L+ESA+ASPKL           
Sbjct: 106 QNGNAARGKKPAWNKPSKD----AVEVGPVMGAVAWPALSESARASPKLPADSSSKTVTD 165

Query: 123 ---------GPTIVPPQRQAT---NNAKSDPSLKHPVVARQRSSRRSGGGGSSMGG---- 182
                    GP I P         N+A ++P+  H + ARQR ++R  GGGSS GG    
Sbjct: 166 VSVPPPVSPGPVITPSPNSKKLHGNHANTNPTSTHAMPARQRPTKR--GGGSSTGGANAQ 225

Query: 183 --PARGFYRPP-PPPPPPFPVFQIPC---SMMPAIPDPSHGEPLFRSNNRHPRAIAGFVP 242
             P  GF  PP PPPPPPFPVF +P    +++PA+PDPS  +P FR +N   R I G   
Sbjct: 226 AHPHSGFAHPPLPPPPPPFPVFPLPNGYGTLVPAMPDPSPRDPSFRGSNWDARPI-GIGH 285

Query: 243 QTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQ-HRPPTR 302
           QT+ V+D  N   RGN   H RG+G + NN G K+  QDRG + N RD    Q  RPP R
Sbjct: 286 QTHQVNDPRNSSRRGNFGSHTRGDGPFHNNYGSKRDQQDRGNFMNGRDVQMHQLQRPPPR 345

Query: 303 GLMPPTPPYTAQF-PQPVLPYGNPMHPPEFVYVPTWPLETYRGMPFMLP---PSVYYSAV 362
           GL+ P PP +A F PQPV P+ NPM  PEFVY+PT PL+  R MPF+     P+++    
Sbjct: 346 GLVRPVPPSSAAFTPQPVRPFANPMGFPEFVYIPTLPLDPIR-MPFIPHAPHPAMFMPVA 405

Query: 363 D---PTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQW 422
           +   P+L + +V QI+YYF DTNLI D YLR  MD QGWVPISLIA+F RVK+LTTN+Q 
Sbjct: 406 ESPMPSLPSLIVNQIDYYFSDTNLIRDEYLRSNMDAQGWVPISLIANFPRVKSLTTNVQL 465

Query: 423 IIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRL 477
           I++SLR S+++EVQD+++R+RN+W KWI  S +L ++  SS+      D L+TSFQ + +
Sbjct: 466 IMDSLRASSIVEVQDDKVRRRNDWTKWISTSGRLASESGSSSGDVQSSDMLSTSFQKMTV 525

The following BLAST results are available for this feature:

BLAST of CmaCh01G019850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP1B_ARATH	3.1e-20	29.76	La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2	[more]
LRP1C_ARATH	8.9e-20	26.83	La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1	[more]
LRP1A_ARATH	1.7e-18	30.25	La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1	[more]
LAR1B_HUMAN	1.3e-15	47.78	La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2	[more]
LARP1_MOUSE	4.7e-13	45.45	La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3	[more]

BLAST of CmaCh01G019850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH68_CUCSA	6.3e-166	64.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1	[more]
M5Y7L2_PRUPE	3.6e-84	41.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018923mg PE=4 SV=1	[more]
K7KHP9_SOYBN	5.3e-80	42.05	Uncharacterized protein OS=Glycine max GN=GLYMA_04G021900 PE=4 SV=1	[more]
A0A067GYY0_CITSI	7.0e-80	42.66	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1	[more]
V4TFJ5_9ROSI	3.5e-79	43.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000767mg PE=4 SV=1	[more]

BLAST of CmaCh01G019850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66100.1	1.7e-21	29.76	winged-helix DNA-binding transcription factor family protein	[more]
AT4G35890.1	5.0e-21	26.83	winged-helix DNA-binding transcription factor family protein	[more]
AT5G21160.3	9.4e-20	30.25	LA RNA-binding protein	[more]
AT5G46250.1	1.2e-06	29.73	RNA-binding protein	[more]

BLAST of CmaCh01G019850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437412\|ref\|XP_004136486.1\|	9.1e-166	64.35	PREDICTED: la-related protein 1C [Cucumis sativus]	[more]
gi\|659132939\|ref\|XP_008466467.1\|	6.1e-162	63.70	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]
gi\|645228928\|ref\|XP_008221222.1\|	2.4e-89	44.38	PREDICTED: la-related protein 1C-like [Prunus mume]	[more]
gi\|596293936\|ref\|XP_007226751.1\|	5.1e-84	41.37	hypothetical protein PRUPE_ppa018923mg [Prunus persica]	[more]
gi\|470113445\|ref\|XP_004292934.1\|	1.5e-80	42.83	PREDICTED: la-related protein 1C-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G019850.1	CmaCh01G019850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 324..379 score: 1.3
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 318..396 score: 7.8
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 314..403 score: 2
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 318..397 score: 3.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 314..404 score: 2.18
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 81..402 score: 8.1
None	No IPR available	PANTHER	PTHR22792:SF59	LA-RELATED PROTEIN 1B-RELATED	coord: 81..402 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G019850	Cucsa.343170	Cucumber (Gy14) v1	cgycmaB0934
CmaCh01G019850	Cucsa.322820	Cucumber (Gy14) v1	cgycmaB0890
CmaCh01G019850	Cla007435	Watermelon (97103) v1	cmawmB444
CmaCh01G019850	Csa3G873810	Cucumber (Chinese Long) v2	cmacuB444
CmaCh01G019850	MELO3C003736	Melon (DHL92) v3.5.1	cmameB424
CmaCh01G019850	ClCG05G015530	Watermelon (Charleston Gray)	cmawcgB415
CmaCh01G019850	CSPI03G43570	Wild cucumber (PI 183967)	cmacpiB447
CmaCh01G019850	CmoCh01G020430	Cucurbita moschata (Rifu)	cmacmoB469
CmaCh01G019850	Lsi01G005730	Bottle gourd (USVL1VR-Ls)	cmalsiB407
CmaCh01G019850	Lsi04G017660	Bottle gourd (USVL1VR-Ls)	cmalsiB424
CmaCh01G019850	Cp4.1LG02g08190	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G019850	MELO3C003736.2	Melon (DHL92) v3.6.1	cmamedB487
CmaCh01G019850	CsaV3_3G046030	Cucumber (Chinese Long) v3	cmacucB0536
CmaCh01G019850	Cla97C05G096570	Watermelon (97103) v2	cmawmbB483
CmaCh01G019850	Cla97C10G185180	Watermelon (97103) v2	cmawmbB446
CmaCh01G019850	Bhi09G001769	Wax gourd	cmawgoB0619
CmaCh01G019850	CsGy3G041100	Cucumber (Gy14) v2	cgybcmaB358
CmaCh01G019850	Carg17211	Silver-seed gourd	carcmaB1293
CmaCh01G019850	Carg07939	Silver-seed gourd	carcmaB0909

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G019850	CmaCh03G006620	Cucurbita maxima (Rimu)	cmacmaB422
CmaCh01G019850	CmaCh07G004100	Cucurbita maxima (Rimu)	cmacmaB438

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G019850	Silver-seed gourd	carcmaB0136
CmaCh01G019850	Silver-seed gourd	carcmaB0187
CmaCh01G019850	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh01G019850	Cucurbita moschata (Rifu)	cmacmoB435
CmaCh01G019850	Cucurbita moschata (Rifu)	cmacmoB483
CmaCh01G019850	Cucurbita maxima (Rimu)	cmacmaB427
CmaCh01G019850	Watermelon (97103) v1	cmawmB440
CmaCh01G019850	Cucurbita pepo (Zucchini)	cmacpeB507
CmaCh01G019850	Bottle gourd (USVL1VR-Ls)	cmalsiB452
CmaCh01G019850	Melon (DHL92) v3.6.1	cmamedB498