Cla97C10G185180 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G185180
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RNA-binding protein Lupus La
Location	Cla97Chr10 : 609519 .. 612540 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGTAAATTTCAATTTTGTTGGAAGTTTATTTTTATCTCACATTTTCCACTAAATTTATCTTTCAAAAATATAAAAAAATAAATAGACTTTAAAATAGCATTTTTTTCCTTATATAGCTTGTCTTCTCATCTTAAATATTATTAATACAACAATTAATGTTCTTTTTTTTATTATTAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGGTATGATATGAGTTTATCATTACAAATAATTATTAGTATTGGATTCCTAACAATTTTGTATCTAACTTTTTTTTATTTTATAAAAAATAAATTGAAGTATCAATATAATTAGATTTATAAATAACCCATCAAAAATTAAACGGATTTATGAAAACTATACTTTTGGGTTTCTAAATAGTGAGTAACATAATAAAATAATTATTTTATAAATCTCAATTATTGGAAATGTTTTTTAATTAACTGGATTTATTTTTGCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAAGTAAGTGATATATATTTTCTTAATGTATTTATGCTTATATATTTTTAGATTTTTCATTTATTTATTATGGATGAATTTCTATTCATTTAAAAAAAAATAAAATTAAACGATCTATTCTTTAATTTCTATGCACCTTTGATTTTGATTATTTGCTGAAAAATTATTTTAAGCTTAAATTCTATATTTCATAGTTATCATTAATATGACTTTTGGTGAAAATAGTTATAGTTATCTCTATGAATTTTAACTACTTTTTAAATTAATCTTAAAAATAGAAATGTTGTATAACATATATTATAATTTATTGAATAATAAAATGATAAGAGAGAATAAGATAATCTAATTTATTTTTATTAATATTTATCTTATTTTATTTGATAGGTAAAAAAGTTGACAGATGATATTGGATTTATTTTATTTGCATTACGTGGAGGTTCGAGCGTTGTTGAAGTATCGGTAAGTTTTTATAGAACTTTATCAATTTTTTATTATGAAATTTGAAACTTTTTAATGAATTTTTTTTTGGAATAATTCGATTTAAAACTCTAATTTATTTTTTCAAAAAATAATTCCTTTTTACTTGTGTTTATAACCAGTTGGATATTTTGGCTATTTTTCTTTTAATAATATTAATTTTTAATTTTTTTTTTTCTCTCATGTATTAGGATCAAAAGATAAGGAGAAAGAGGTGATTACTTTGTTGATCTACAATTTTCAAGAAGAAGAAAAAAAATTTAACTACAGCTTCTATAATTTTGGTTATATTGGTTTTACAAGTGTGAATATTTATTTGTAGGGCTTCTCTAGTTTTTTTATTTTTTATTTTATTATTATTATTTTTTTTTTTTAAGCTTAAGGGAAGGAGTTTCAAATCTTGAAAGTAATCAACTTTTAAGTAAATTTTTTGTGTAAATTTATTCCACTATTAAATTTTTATATCTAATCTATTTTACTCTTTATATTATTAATTTTGTAATTTTGTCTCCAACCTTTCATAAATCTTCAATTGAGCAAGTAGCATTATTATAAAATCACAAGAGCCAAAAATATTCATTTTTGTGAAATCTAAAGGCTAAAATAAGTTTTTGAATGTTTCACATAAACTACTAATATGAAATAATTAAATTTTAGGTTTAAATACTACTTTAATTTCTATACTTTTAGTTTTAGTTCATTTTGGTCCCTATATTTTTAAATCCTATACTTTTAACTTCGGTTCATTTTGATTCATGTACTATTAAAATATTTATTTTGGTCCTTTACTTTTAAAAAGTTAAAAATGAGAAAATAAAGTATATTTGATATATAAAACACTACATTAAGTATGTTTTATAAGTGCATGAACAAGATAATTTGCACAATTTATCGTCTTATATACCAAACAATATATGCTATATGCTATGTATATTTACATTTTTTCAGTATATTTGTAAACATACCAAAAGATAAATTATGGTATATGCAATATATATTTACATTTTCCAGTATATTACCAGTATATTTGACTATACATGAGATTTGAATTTAAAGATGTTCAATTTTCAGCTAGAAATATGAAAGAAAATAAACTGAATATCCTAAAATGAATGAAACATTAATTTGAAGTATCATACATTAAATGAATAACAATCGAAATTAATAAATAACGAAAATAAAGTAGCCAAAATCAGCTTAGCTTAATTAACCTAGTATTTATATTATAAATCTCAAAATCAGAGGTTTGATTCTCATTTTCCACTTATTTTCAAAAAAAAAAAAAAAGTTTAAATTCAAAATTATGTTAATAAGGAACAATTAAATATTTATCAAATTTTATTGAGGAGAGATAATGTAATTAATGATATTTTTAAAAAAAATAAAAATACTTATATAATTAATACTAAATTCGAAATGATAAATTTTTTAAAATATTGCAAAATTAAAAAATAAAAGAGAATTTATGAAAAAGATTAAAAATGCCCAAAAAAATTGCTAAAACTAGTTATAAAATATTATTCAATTTTAGAACATTTGTGAAATATTAGTGATGTAGTAGGCTAATTCCCTAAATTTTTTTGATAGGGCTAAAGAGTGTTTATAGGTAATTGGACTTCCTCGTGTCTAATAACTTCTCATAGCTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

mRNA sequence

ATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAAGTAAAAAAGTTGACAGATGATATTGGATTTATTTTATTTGCATTACGTGGAGGTTCGAGCGTTGTTGAAGTATCGCTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

Coding sequence (CDS)

ATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAAGTAAAAAAGTTGACAGATGATATTGGATTTATTTTATTTGCATTACGTGGAGGTTCGAGCGTTGTTGAAGTATCGCTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

Protein sequence

MVPIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPPPYQAKYPHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALRGGSSVVEVSLKKCVTSRVLDLAPTSHYPLPIAHLVDSCLVAIDDSCLLLHRLSSLGAIV

Homology

[Close]

BLAST of Cla97C10G185180 vs. NCBI nr
Match: XP_022145446.1 (la-related protein 1B-like [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 3   PIRSHEYGGATSSNNQGFLPLPLAYYISPDFG--QYNMGSXXXXXXXXXXXXXQAKYPHT 62
           PI    Y G   SN Q     P+AYYISP+FG   Y   S XXXXXXXXXXX    +P T
Sbjct: 48  PIDPPPYSGYVLSNPQN----PMAYYISPNFGPSNYMYNSCXXXXXXXXXXXIYHPFP-T 107

Query: 63  KELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFA 122
           KELYWKI+NQVNYYFSDENL+ DT+LK  MD DGWVPI LIA F +++ LT+DI +ILFA
Sbjct: 108 KELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFA 167

Query: 123 LRGGSSVVEV 131
           L  GSSVVEV
Sbjct: 168 LH-GSSVVEV 171

[Close]

BLAST of Cla97C10G185180 vs. NCBI nr
Match: KGN48946.1 (hypothetical protein Csa_6G507200 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           +LY +IV+Q+ YYFSDENL  DTYL+  MD DGWVPI L+A F+ V+ LTD+I  IL AL
Sbjct: 136 QLYARIVHQIEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDAL 195

Query: 122 RGGSSVVEVSLKKCVTSR------VLDLAPTSHYPLPIA 155
           R  S+VVEV   K           +L   PTS+   P++
Sbjct: 196 RSTSTVVEVQGDKVRRRNDYSKWIMLPSTPTSNEVAPLS 234

[Close]

BLAST of Cla97C10G185180 vs. NCBI nr
Match: XP_004134845.2 (PREDICTED: la-related protein 1C-like [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           +LY +IV+Q+ YYFSDENL  DTYL+  MD DGWVPI L+A F+ V+ LTD+I  IL AL
Sbjct: 173 QLYARIVHQIEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDAL 232

Query: 122 RGGSSVVEVSLKKCVTSR------VLDLAPTSHYPLPIA 155
           R  S+VVEV   K           +L   PTS+   P++
Sbjct: 233 RSTSTVVEVQGDKVRRRNDYSKWIMLPSTPTSNEVAPLS 271

[Close]

BLAST of Cla97C10G185180 vs. NCBI nr
Match: XP_008440861.1 (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           +LY +IV+Q+ YYFSDENL  DTYL+  MD DGWVPI L+A F+ V+ LTD+I  IL AL
Sbjct: 386 QLYARIVHQIEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDAL 445

Query: 122 RGGSSVVEV 131
           R  S+VVEV
Sbjct: 446 RSTSTVVEV 454

[Close]

BLAST of Cla97C10G185180 vs. NCBI nr
Match: PNY12787.1 (La-related protein 1B [Trifolium pratense])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 44/69 (63.77%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           EL+ KIVNQ+NYYFS+ENL +DTYLK+QMD  GWVP++LIA F++VK LTD+I  +L A+
Sbjct: 344 ELHTKIVNQINYYFSNENLNNDTYLKSQMDDQGWVPLSLIAGFKKVKFLTDNIQIVLDAV 403

Query: 122 RGGSSVVEV 131
           +  S+VVEV
Sbjct: 404 Q-TSNVVEV 411

[Close]

BLAST of Cla97C10G185180 vs. TrEMBL
Match: tr|A0A0A0KMK2|A0A0A0KMK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507200 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           +LY +IV+Q+ YYFSDENL  DTYL+  MD DGWVPI L+A F+ V+ LTD+I  IL AL
Sbjct: 136 QLYARIVHQIEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDAL 195

Query: 122 RGGSSVVEVSLKKCVTSR------VLDLAPTSHYPLPIA 155
           R  S+VVEV   K           +L   PTS+   P++
Sbjct: 196 RSTSTVVEVQGDKVRRRNDYSKWIMLPSTPTSNEVAPLS 234

[Close]

BLAST of Cla97C10G185180 vs. TrEMBL
Match: tr|A0A1S3B1N1|A0A1S3B1N1_CUCME (la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103485156 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           +LY +IV+Q+ YYFSDENL  DTYL+  MD DGWVPI L+A F+ V+ LTD+I  IL AL
Sbjct: 386 QLYARIVHQIEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDAL 445

Query: 122 RGGSSVVEV 131
           R  S+VVEV
Sbjct: 446 RSTSTVVEV 454

[Close]

BLAST of Cla97C10G185180 vs. TrEMBL
Match: tr|A0A2K3PBW9|A0A2K3PBW9_TRIPR (La-related protein 1B OS=Trifolium pratense OX=57577 GN=L195_g009426 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 44/69 (63.77%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFAL 121
           EL+ KIVNQ+NYYFS+ENL +DTYLK+QMD  GWVP++LIA F++VK LTD+I  +L A+
Sbjct: 344 ELHTKIVNQINYYFSNENLNNDTYLKSQMDDQGWVPLSLIAGFKKVKFLTDNIQIVLDAV 403

Query: 122 RGGSSVVEV 131
           +  S+VVEV
Sbjct: 404 Q-TSNVVEV 411

[Close]

BLAST of Cla97C10G185180 vs. TrEMBL
Match: tr|A0A1U8JUQ4|A0A1U8JUQ4_GOSHI (la-related protein 1C-like OS=Gossypium hirsutum OX=3635 GN=LOC107909476 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 55  AKYPHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDI 114
           A  PH  +L+  IVNQ++YYFS+ENL  DTYL+  MD  GWVPI LIA F++V  LTD+I
Sbjct: 370 APEPHDNQLHASIVNQIDYYFSNENLIKDTYLRQNMDDQGWVPIKLIAGFKKVSLLTDNI 429

Query: 115 GFILFALRGGSSVVEV---SLKKCVTSRVLDLAPTSHYP 151
             I+ AL+  S+VVEV    ++K +      + P+ H+P
Sbjct: 430 QLIMDALQ-SSTVVEVQGDKVRKQIDWMRWIMPPSVHFP 467

[Close]

BLAST of Cla97C10G185180 vs. TrEMBL
Match: tr|A0A2P5QCQ7|A0A2P5QCQ7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD30751 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 55  AKYPHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDI 114
           A  PH  +L+  IVNQ++YYFS+ENL  DTYL+  MD  GWVPI LIA F++V  LTD+I
Sbjct: 370 APEPHDNQLHASIVNQIDYYFSNENLIKDTYLRQNMDDQGWVPIKLIAGFKKVSLLTDNI 429

Query: 115 GFILFALRGGSSVVEV---SLKKCVTSRVLDLAPTSHYP 151
             I+ AL+  S+VVEV    ++K +      + P+ H+P
Sbjct: 430 QLIMDALQ-SSTVVEVQGDKVRKQIDWMRWIMPPSVHFP 467

[Close]

BLAST of Cla97C10G185180 vs. Swiss-Prot
Match: sp|Q940X9|LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.9e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 58  PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFI 117
           P   +L  +++ QV YYFSDENL++D YL + MD +GWVP  +IA F++VK +T D+ FI
Sbjct: 273 PEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFI 332

Query: 118 LFALRGGSSVVEV 131
           ++AL G S+ VEV
Sbjct: 333 VYAL-GFSNSVEV 344

[Close]

BLAST of Cla97C10G185180 vs. Swiss-Prot
Match: sp|Q8RWR2|LRP1B_ARATH (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 63  LYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALR 122
           LY KI+ QV YYFS +NL  D +L++QM+ +GWVP+ +IA FR++ +LT++I  IL ALR
Sbjct: 334 LYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALR 393

Query: 123 GGSSVVEV 131
             S VVE+
Sbjct: 394 -SSEVVEI 400

[Close]

BLAST of Cla97C10G185180 vs. Swiss-Prot
Match: sp|Q6ZQ58|LARP1_MOUSE (La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 67  IVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALRGGSS 126
           I  Q+ YYFS +NL+ D +L+ +MDADG++PITLIA+F +V+ LT DI  I  AL+  S 
Sbjct: 382 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK-DSK 441

Query: 127 VVEVSLKKCVTSRVLDLAPTSHYPLPIAHLVD 159
           VVE+     V  +V        +PLP   +VD
Sbjct: 442 VVEM-----VEEKVRRREEPEKWPLPGPPIVD 467

[Close]

BLAST of Cla97C10G185180 vs. Swiss-Prot
Match: sp|Q6PKG0|LARP1_HUMAN (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 67  IVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALRGGSS 126
           I  Q+ YYFS +NL+ D +L+ +MDADG++PITLIA+F +V+ LT DI  I  AL+  S 
Sbjct: 407 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK-DSK 466

Query: 127 VVEVSLKKCVTSRVLDLAPTSHYPLP 153
           VVE+     V  +V        +PLP
Sbjct: 467 VVEI-----VDEKVRRREEPEKWPLP 486

[Close]

BLAST of Cla97C10G185180 vs. Swiss-Prot
Match: sp|Q9I7T7|Y1505_DROME (La-related protein CG11505 OS=Drosophila melanogaster OX=7227 GN=CG11505 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 67  IVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALRGGSS 126
           +  Q+ YYFS ENL +DTYL +QMD+D +VPI  +A F  V+KLT+DI  I   LR   +
Sbjct: 272 LATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPN 331

Query: 127 V--------VEVSLKKCV 137
           V        V  + K+C+
Sbjct: 332 VQVDDKGLRVRPNRKRCI 349

[Close]

BLAST of Cla97C10G185180 vs. TAIR10
Match: AT5G21160.3 (LA RNA-binding protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 58  PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFI 117
           P   +L  +++ QV YYFSDENL++D YL + MD +GWVP  +IA F++VK +T D+ FI
Sbjct: 273 PEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFI 332

Query: 118 LFALRGGSSVVEV 131
           ++AL G S+ VEV
Sbjct: 333 VYAL-GFSNSVEV 344

[Close]

BLAST of Cla97C10G185180 vs. TAIR10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 63  LYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALR 122
           LY KI+ QV YYFS +NL  D +L++QM+ +GWVP+ +IA FR++ +LT++I  IL ALR
Sbjct: 335 LYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALR 394

Query: 123 GGSSVVEV 131
             S VVE+
Sbjct: 395 -SSEVVEI 401

[Close]

BLAST of Cla97C10G185180 vs. TAIR10
Match: AT5G46250.1 (RNA-binding protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 62  ELYWKIVNQVNYYFSDENLKDDTYLKNQM--DADGWVPITLIANFRQVKKLTDDIGFILF 121
           EL  KI+ QV YYFSDENL  D +L N M  +  G+VPI+ IA F ++KKLT D   I+ 
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 122 ALRGGSSVV 129
           AL+  S +V
Sbjct: 162 ALKESSFLV 170

[Close]

BLAST of Cla97C10G185180 vs. TAIR10
Match: AT4G35890.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 63  LYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQVKKLTDDIGFILFALR 122
           L+ K+  Q+ YYFSDENL  D YL+  M+ +G+VP+ ++A F++V +LTD+I  I+ AL+
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQ 428

Query: 123 GGSSV 128
               V
Sbjct: 429 NSPHV 433

[Close]

BLAST of Cla97C10G185180 vs. TAIR10
Match: AT2G43970.1 (RNA-binding protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 66  KIVNQVNYYFSDENLKDDTYLKNQM--DADGWVPITLIANFRQVKKLTDD 114
           KIVNQV YYFSD NL    +L   +  D +G+VPI ++A+F+++K + ++
Sbjct: 196 KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINN 245

The following BLAST results are available for this feature:

BLAST of Cla97C10G185180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145446.1	1.0e-25	63.08	la-related protein 1B-like [Momordica charantia]	[more]
KGN48946.1	4.8e-15	49.49	hypothetical protein Csa_6G507200 [Cucumis sativus]	[more]
XP_004134845.2	4.8e-15	49.49	PREDICTED: la-related protein 1C-like [Cucumis sativus]	[more]
XP_008440861.1	8.2e-15	62.32	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]
PNY12787.1	1.4e-14	63.77	La-related protein 1B [Trifolium pratense]	[more]

BLAST of Cla97C10G185180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMK2\|A0A0A0KMK2_CUCSA	3.2e-15	49.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507200 PE=4 SV=1	[more]
tr\|A0A1S3B1N1\|A0A1S3B1N1_CUCME	5.4e-15	62.32	la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103485156 PE=4 SV=1	[more]
tr\|A0A2K3PBW9\|A0A2K3PBW9_TRIPR	9.3e-15	63.77	La-related protein 1B OS=Trifolium pratense OX=57577 GN=L195_g009426 PE=4 SV=1	[more]
tr\|A0A1U8JUQ4\|A0A1U8JUQ4_GOSHI	3.5e-14	47.47	la-related protein 1C-like OS=Gossypium hirsutum OX=3635 GN=LOC107909476 PE=4 SV...	[more]
tr\|A0A2P5QCQ7\|A0A2P5QCQ7_GOSBA	3.5e-14	47.47	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD30751 PE=4 SV...	[more]

BLAST of Cla97C10G185180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q940X9\|LRP1A_ARATH	6.9e-13	50.68	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]
sp\|Q8RWR2\|LRP1B_ARATH	2.2e-11	52.94	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]
sp\|Q6ZQ58\|LARP1_MOUSE	3.8e-11	44.57	La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3	[more]
sp\|Q6PKG0\|LARP1_HUMAN	6.4e-11	45.35	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2	[more]
sp\|Q9I7T7\|Y1505_DROME	7.1e-10	43.59	La-related protein CG11505 OS=Drosophila melanogaster OX=7227 GN=CG11505 PE=1 SV...	[more]

BLAST of Cla97C10G185180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21160.3	3.8e-14	50.68	LA RNA-binding protein	[more]
AT5G66100.1	1.2e-12	52.94	winged-helix DNA-binding transcription factor family protein	[more]
AT5G46250.1	2.0e-10	50.72	RNA-binding protein	[more]
AT4G35890.1	5.7e-10	44.62	winged-helix DNA-binding transcription factor family protein	[more]
AT2G43970.1	1.9e-05	44.00	RNA-binding protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036388	WH-like_DNA-bd_sf
IPR006630	La_HTH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G185180.1	Cla97C10G185180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 61..140 e-value: 4.7E-17 score: 72.7
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 67..122 e-value: 1.2E-21 score: 76.3
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 57..147 score: 23.543
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 53..143 e-value: 2.8E-27 score: 96.2
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 34..141
None	No IPR available	PANTHER	PTHR22792:SF76	LA-RELATED PROTEIN 1	coord: 34..141
None	No IPR available	CDD	cd07323	LAM	coord: 66..131 e-value: 1.46235E-27 score: 99.1432
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 54..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G185180	CmaCh01G019850	Cucurbita maxima (Rimu)	cmawmbB446
Cla97C10G185180	CmaCh07G004100	Cucurbita maxima (Rimu)	cmawmbB878
Cla97C10G185180	CmoCh01G020430	Cucurbita moschata (Rifu)	cmowmbB427
Cla97C10G185180	Carg07939	Silver-seed gourd	carwmbB0670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G185180	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G185180	Watermelon (97103) v2	wmbwmbB003
Cla97C10G185180	Silver-seed gourd	carwmbB0160
Cla97C10G185180	Silver-seed gourd	carwmbB0427
Cla97C10G185180	Silver-seed gourd	carwmbB0453
Cla97C10G185180	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G185180	Cucumber (Gy14) v2	cgybwmbB400
Cla97C10G185180	Cucumber (Gy14) v1	cgywmbB019
Cla97C10G185180	Cucumber (Gy14) v1	cgywmbB562
Cla97C10G185180	Cucurbita maxima (Rimu)	cmawmbB337
Cla97C10G185180	Cucurbita maxima (Rimu)	cmawmbB673
Cla97C10G185180	Cucurbita maxima (Rimu)	cmawmbB846
Cla97C10G185180	Cucurbita moschata (Rifu)	cmowmbB320
Cla97C10G185180	Cucurbita moschata (Rifu)	cmowmbB645
Cla97C10G185180	Cucurbita moschata (Rifu)	cmowmbB820
Cla97C10G185180	Cucurbita moschata (Rifu)	cmowmbB852
Cla97C10G185180	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G185180	Wild cucumber (PI 183967)	cpiwmbB444
Cla97C10G185180	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G185180	Cucumber (Chinese Long) v3	cucwmbB438
Cla97C10G185180	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G185180	Cucumber (Chinese Long) v2	cuwmbB420
Cla97C10G185180	Bottle gourd (USVL1VR-Ls)	lsiwmbB118
Cla97C10G185180	Bottle gourd (USVL1VR-Ls)	lsiwmbB395
Cla97C10G185180	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G185180	Melon (DHL92) v3.6.1	medwmbB512
Cla97C10G185180	Melon (DHL92) v3.5.1	mewmbB520
Cla97C10G185180	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G185180	Watermelon (Charleston Gray)	wcgwmbB095
Cla97C10G185180	Watermelon (97103) v1	wmwmbB056
Cla97C10G185180	Watermelon (97103) v1	wmwmbB253
Cla97C10G185180	Wax gourd	wgowmbB409
Cla97C10G185180	Wax gourd	wgowmbB548