Carg17211 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17211
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	la-related protein 1C-like
Location	Cucurbita_argyrosperma_scaffold_110 : 444377 .. 448838 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTCCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCCGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGTTGATTCTCCTTCTAAGTCTGTTTCTAGAAGTATCAGTCCTCCCTTCTTGTGCATGATGTAGTTTATCTTGTGTTTTTTGAGCAGGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCCGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCTTGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTACCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGTGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTTATGCGCCCTACGCCACCTTGCACTGCTCAGTTTCCCCAGCCTGTTATACCTTATGGGAATCCGATGCCTCCTCCTGGTGGGTGTCTTTCTAAGGACTAATGATGACAGTAGGTCTATAATTTTCCAATCTGAATGTTAATTTGCATCCTTGTTTTGATCAGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCCACCTCCTTCAGTGTACAATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAATCAGATTGAATATTATTTCAGGTAATGTGGTTTCCCATGCGATCCATTTGGTTCTTGTGTTTCTCATTTTTCATGGTTAATGATTATAACTGTACATTCATGTCCATGCTGTTTGCAGCGACACGAATTTGATAACGGATGGATATCTAAGGTGCCAGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCGGCTTTTCTATGGTAAGTTCTGATAATAAGTTGCCAGTTCTTTATGAAAATAAAGAAAGTTAAATATATAGGTTTTAGAGCGGTCGTGAATTTTATTCATAAATAAATTGCTTATTGGGAAGTGCATGAGTTTATTTTTATCATATAGCGTGCTCTATCTAATGTTAGTTTATTTCTAACTTTTTACTATATGAGAAACAAAAGAAAAGAGCTCCCTCAAGTGAGTCATATTTCAGACAATCTTCTTTTAGAACTATCCTTTGTCTTTTTCTCGGAAAAGTAACACTATTCTTCATTTGATCCAATCCTTGAGGATAACTGTTAGAATCGTGATTGGGTTGAAGTCTTTTAGCCCCCCTTGTGAAGCAAGTTGGCTGTTCACCTCACATTCTTTACTCTCCATACTTGAAACCAAGTTGCCTTTTAATCCAAATTTTTTATTAATTCGAGAGTTATCCACTCGACAAAAGGACCCTACTTTTCCTTCACATGGTGATGATTCTGATGCTAAATCCAACGTTAGTAGGAACATCGTGGAATCGATTACAAAACTTAACTAGGAGGACGTTGTTCTTGAAGATTCTTGTTTTGAAGCTTTTAGTTCATTATTTCGAAAAGGTGACTGATACTTTTTTTCAATATCTGCTAAATTCACTTTTTTTACTGAAACTTGTGGGTTTGAGATGCGTGAAATTCCCCACTGATTCAAGAAAGGAACTATATTCACTTAGCTCTCATCCTCAACAATTCTTGGTGTTGTAGACTAAAATGAAGACAACTTTTTTTAGTTGGTTAATTGAAGACAACTCGAACAAAATATATTGAAGACAACTCAAACAAACCATCCTTCCTTTAATTGGTTTAAAATACCACAGTTTTTTTAACTAGTTGATTACATAGTTTGGGTAGTTTGGGAATGAAAATCTCAAGATGGGTATGTTGCTAGTTGGACTGATCTTTTCAGAGTTTTGAGGCGGTTAGTTGGTTTAAAATACCACAGTTTTTCTAACCAGTTGATTACATAGTTTGAGTAGTTTGGGAATGAAAATCTCAAGATGGGCATGTTGTTAGTTGGACTAATCTTTTCGGAGTTTTGAGGCTTTTAGTTGTCTTAGTTCTTCTTGTATACTCGGTACATAATTTCTCATATTTATATATTATTTCTTTCTAAATATTCAAGTCTATATTCGATTTATACTTTATGTCATATGTATTTGTATAGGTCAATATTAACAACATATATCCATAATGTTTTCGTAGCACTCATGGCCTTTTTCTTTACGTGGAGCCGACATTTCCTTACTAGTTATGTCATTCAAACAGATTTATCAACAACAAGAGTATGTTAAAGGAAGACTACCTTTTTGCTAGAGAGAGGTGTTTAGTGTTAAAATTTGGTTTCTTGATCTTGTTTGTGCTCAAATGAGTGAAAACAAAGAGATTGTCGTACTAAAATTTTGTCATTGATCATCATGATGTCTTATCCTCCCTCTCAAAGCTCTACCTTTGTTCATTTTTTTCTGGGTGGAGTGCGGATATTTGGTTGTGACCAAGGTTGTATTTGAGCAAATCTGTAATGTTGGGTTGCATGACCAATTTGTATATCCCTTGAAGCTGTTCATCACTTTATCTTTTGCCCTACAAATTTTTTATTTCTCTCCCATCTTCGTAGACATAATTTTCTTATATTTTCAGGGGAAAAAAGGTTTCATTACAACTTTTAATGTAATCTGCTAATTAAAGTGTTTTTCCTCGTCCAGTTGTGTATGTATGCTGGTTGTCACTTGTCTATGCATTAATGAGTTTCTATATGGGTAGTATGTGTTTTCTGCTCAAGTTAATTTTGAATGTTTATTTTAATAATACTGGTCTTTTTATGATAATTTTTTCCCTGACTAGTTTTCTTGCACAGCTTGTTCGACTAAAGCAATAGCTTGTAAATGACTTGTTATTGAAACCAGTGTTATCAAAATAAACATTTAAATGTTTGCTTTACTTCAAAATTACTACCTATGAATGAAAACACTACCGTGGTTGATTGTTGCGTTACTTTTGCTTTTGCAGGTAAAGAATTTGACGACCAATATTCTATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGTTTGTTTTCCAGATCTATCAATGGGATTAAACCTATCCAATAATACCACCATCCAACGTATTTTTTGGTTCAGTTGTGAAGTACAATATTACTTGTCTGATGACTGACCCGAACGTGAAATCTAGAAGTAATCCCATCTTTTGTGAAATTACTGGTTTGTGGGTATAGATATATACCTTTATAGGAAGCAGGAGAGGAGCTGAGTTTCGCTCAAGTTGTCCTGCTGGCCTAATTCTTCTGCCTGATGTTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGAGTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCGAGAGTACTACCAAGATACAATCTTCTGAGTCAGCTGATTCTTCACACCTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGATTAATTTTTTCTCCCGGAGGTTTTAGCACTTGCTTATTAGGATCATATACGTCTACTTACATGGTTTTGGCAGTTTAAAAGAGGCTAGTTTTTGGGGGTACGAAGAGTATTTATTCATTATTCCAAATATAAGAAGAAAAGAAGTATAGGTTGGAAGCTCTAATCTTTGAGGTTATCATTTAGTTTTCTGGTGCTTTCGGAGTGACATTAGTGACTCTTAGTATATAACATTCATTGAACTAGTTCCTGAATCATCGGTGACCATTTTTTGGAGGGAATGTCCCTTGAATTTTAATGCTTGCAAATTTTGGTTGATTTTGCTTACGATATCTGCGATTTGTTCTTCTCTAGCTTGTATTGTAGAATCAAACCTTTTTTGTTATGTTTGTTCTCCTGTGTTGTTTCGCATTTGTTTGATTATATTCAAAATTGAGATGAAGTTTTG

mRNA sequence

ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTCCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCCGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGTTGATTCTCCTTCTAAGTCTGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCCGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCTTGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTACCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGTGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTTATGCGCCCTACGCCACCTTGCACTGCTCAGTTTCCCCAGCCTGTTATACCTTATGGGAATCCGATGCCTCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCCACCTCCTTCAGTGTACAATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAATCAGATTGAATATTATTTCAGCGACACGAATTTGATAACGGATGGATATCTAAGGTGCCAGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCGGCTTTTCTATGGTAAAGAATTTGACGACCAATATTCTATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGAGTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCGAGAGTACTACCAAGATACAATCTTCTGAGTCAGCTGATTCTTCACACCTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGATTAATTTTTTCTCCCGGAGGTTTTAGCACTTGCTTATTAGGATCATATACGTCTACTTACATGGTTTTGGCAGTTTAAAAGAGGCTAGTTTTTGGGGGTACGAAGAGTATTTATTCATTATTCCAAATATAAGAAGAAAAGAAGTATAGGTTGGAAGCTCTAATCTTTGAGGTTATCATTTAGTTTTCTGGTGCTTTCGGAGTGACATTAGTGACTCTTAGTATATAACATTCATTGAACTAGTTCCTGAATCATCGGTGACCATTTTTTGGAGGGAATGTCCCTTGAATTTTAATGCTTGCAAATTTTGGTTGATTTTGCTTACGATATCTGCGATTTGTTCTTCTCTAGCTTGTATTGTAGAATCAAACCTTTTTTGTTATGTTTGTTCTCCTGTGTTGTTTCGCATTTGTTTGATTATATTCAAAATTGAGATGAAGTTTTG

Coding sequence (CDS)

ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTCCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCCGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGTTGATTCTCCTTCTAAGTCTGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCCGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCTTGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTACCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGTGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTTATGCGCCCTACGCCACCTTGCACTGCTCAGTTTCCCCAGCCTGTTATACCTTATGGGAATCCGATGCCTCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCCACCTCCTTCAGTGTACAATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAATCAGATTGAATATTATTTCAGCGACACGAATTTGATAACGGATGGATATCTAAGGTGCCAGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCGGCTTTTCTATGGTAAAGAATTTGACGACCAATATTCTATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGAGTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCGAGAGTACTACCAAGATACAATCTTCTGAGTCAGCTGATTCTTCACACCTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA

Protein sequence

MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSSSTVSAPETPETPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAVDSPSKSGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMPPPEFVYVPTWPLETYRGMPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVNQDVQTDI

Homology

[Close]

BLAST of Carg17211 vs. NCBI nr
Match: XP_022941059.1 (la-related protein 1C-like [Cucurbita moschata])

HSP 1 Score: 825.9 bits (2132), Expect = 7.4e-236
Identity = 475/491 (96.74%), Postives = 475/491 (96.74%), Query Frame = 0


Query: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSXXXXXXXXXXXX 60
           MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSXXXXXXXXXXXX
Sbjct: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSXXXXXXXXXXXX 60

Query: 61  XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAVDSPSKSGPTIVPPQRQ 120
           XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLA       GPTIVPPQRQ
Sbjct: 61  XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLA-------GPTIVPPQRQ 120

Query: 121 ATNNAKSDPSLKHPV----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP 180
           ATNNAKSDPSLKHPV    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP
Sbjct: 121 ATNNAKSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP 180

Query: 181 CSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQ 240
           CSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPN FPRGNLALHPRGNGHYQ
Sbjct: 181 CSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNCFPRGNLALHPRGNGHYQ 240

Query: 241 NNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEF 300
           NNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPM PPEF
Sbjct: 241 NNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMPPPEF 300

Query: 301 VYVPTWPLETYRGMPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDD 360
           VYVPTWPLETYRGMPFMPPPSVY SAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDD
Sbjct: 301 VYVPTWPLETYRGMPFMPPPSVYYSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDD 360

Query: 361 QGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRT 420
           QGWVPISLIAGFSMVKNLTTNI WIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRT
Sbjct: 361 QGWVPISLIAGFSMVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRT 420

Query: 421 DLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTN 480
           DLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSS LTN
Sbjct: 421 DLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSQLTN 480

Query: 481 GEVNQDVQTDI 488
           GEVNQDVQTDI
Sbjct: 481 GEVNQDVQTDI 484

[Close]

BLAST of Carg17211 vs. NCBI nr
Match: XP_022982500.1 (la-related protein 1B-like [Cucurbita maxima])

HSP 1 Score: 800.8 bits (2067), Expect = 2.5e-228
Identity = 462/488 (94.67%), Postives = 466/488 (95.49%), Query Frame = 0


Query: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSXXXXXXXXXXXX 60
           MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLS XXXXXXXXXXX
Sbjct: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSXXXXXXXXXXX 60

Query: 61  XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAVDSPSKSGPTIVPPQRQ 120
           XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLA       GPTIVPPQRQ
Sbjct: 61  XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLA-------GPTIVPPQRQ 120

Query: 121 ATNNAKSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCSMM 180
           ATNNAKSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCSMM
Sbjct: 121 ATNNAKSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCSMM 180

Query: 181 PAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRG 240
           PAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRG
Sbjct: 181 PAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRG 240

Query: 241 GKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVYVP 300
           GKQRDQDRGVYSNARDAHFRQHRPPTRG M PTPP TAQFPQPV+PYGNPM PPEFVYVP
Sbjct: 241 GKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVP 300

Query: 301 TWPLETYRGMPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWV 360
           TWPLETYRGMPFM PPSVY SAVDPTLSASLV QIEYYF DTNLI DGYLRC+MDDQGWV
Sbjct: 301 TWPLETYRGMPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWV 360

Query: 361 PISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTS 420
           PISLIA FS VKNLTTNI WIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTS
Sbjct: 361 PISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTS 420

Query: 421 STPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQ-SSESADSSHLTNGEV 480
           STPSGSDHDSLATSFQGVR+DEGINQSTPSDTDPRNT+STTKIQ SSESADSS LTNGEV
Sbjct: 421 STPSGSDHDSLATSFQGVRLDEGINQSTPSDTDPRNTKSTTKIQSSSESADSSQLTNGEV 480

Query: 481 NQDVQTDI 488
           NQDVQTDI
Sbjct: 481 NQDVQTDI 481

[Close]

BLAST of Carg17211 vs. NCBI nr
Match: XP_023525275.1 (la-related protein 1C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 726.5 bits (1874), Expect = 6.1e-206
Identity = 437/489 (89.37%), Postives = 438/489 (89.57%), Query Frame = 0


Query: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSXXXXXXXXXXXX 60
           MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLS XXXXXXXXXXX
Sbjct: 1   MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSXXXXXXXXXXX 60

Query: 61  XXXXXXPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAVDSPSKSGPTIVPPQRQ 120
           XXXXXXPAPTSDFFASSEEG PVMGADSWPDLAESAKASPKLA       GPTIVPPQRQ
Sbjct: 61  XXXXXXPAPTSDFFASSEEGAPVMGADSWPDLAESAKASPKLA-------GPTIVPPQRQ 120

Query: 121 ATNNAKSDPSLKHPV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCS 180
           ATNNAKSDPSLKHPV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCS
Sbjct: 121 ATNNAKSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPCS 180

Query: 181 MMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNN 240
           MMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGN ALHPRGNGHYQNN
Sbjct: 181 MMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNFALHPRGNGHYQNN 240

Query: 241 RGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVY 300
           RGGKQRDQDRGVYSNARDAHFRQHRP TRGFM                     X      
Sbjct: 241 RGGKQRDQDRGVYSNARDAHFRQHRPSTRGFMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 VPTWPLETYRGMPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQG 360
                LETYRG PFMPPPSVY SAVDPTLSASLVNQIEYYFSDTNLITDGYLRC+MDDQG
Sbjct: 301 XXXXXLETYRGTPFMPPPSVYYSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCRMDDQG 360

Query: 361 WVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDL 420
           WVPISLIA FSMVKNLTTNI WIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDL
Sbjct: 361 WVPISLIASFSMVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDL 420

Query: 421 TSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGE 480
           TSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESA SS LTNGE
Sbjct: 421 TSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESAGSSQLTNGE 480

Query: 481 VNQDVQTDI 488
           VNQDVQTDI
Sbjct: 481 VNQDVQTDI 482

[Close]

BLAST of Carg17211 vs. NCBI nr
Match: XP_004136486.1 (PREDICTED: la-related protein 1C [Cucumis sativus] >KGN60052.1 hypothetical protein Csa_3G873810 [Cucumis sativus])

HSP 1 Score: 530.4 bits (1365), Expect = 6.4e-147
Identity = 365/532 (68.61%), Postives = 392/532 (73.68%), Query Frame = 0


Query: 5   NHRSPSPTSFKGDNT--YEFPPKNHLCAWAAVVRGEPELIS---QSPL-SXXXXXXXXXX 64
           NHRSPS TS  GDNT   EF  KN    WA VVRGEPE IS   QS L  XXXXXXXXXX
Sbjct: 10  NHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLXXXXXXXXXXXX 69

Query: 65  XXXXXXXXPAPTSDFFASSE------------------------EGGPVMGADSWPDLAE 124
           XXXXXXXX    SD F SSE                        EGG VMGADSWP LAE
Sbjct: 70  XXXXXXXXXXXPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMGADSWPALAE 129

Query: 125 SAKASPKLAVDSPSK----------SGPTIVPPQRQATNNAKSDPSLKHP----VXXXXX 184
           SA+ASPKL VDSP K           GP  VPPQRQATNNAKS+P+LK+P     XXXXX
Sbjct: 130 SARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPXXXXXXXXXX 189

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP----CSMMPAIPDPSHGEPLFRSN 244
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQ+     C+M+PAIPDPS GEPLFRS 
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSP 249

Query: 245 NRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARD 304
           N  PRA+AGFVPQ NF +D+ NFFPRGN  LHPRG+ HY NNRGGK R QDRG+Y NARD
Sbjct: 250 NWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGK-RGQDRGIYFNARD 309

Query: 305 AHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVYVPTWPLETYR-GMPFMPP 364
           AHF+QHRP TRGFMRP PP T QFPQ V P+ NPM  PEFVYVPT PLE YR G+PFMP 
Sbjct: 310 AHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPR 369

Query: 365 PSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLT 424
           P++    VDPTLSAS+V QIEYYFSD NL+ D YLR QMDDQGWVPISLIA F MV +LT
Sbjct: 370 PAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLT 429

Query: 425 TNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 484
            NI WI+ESLRTST +EVQD +IR+RNEWKKW   SN  RTDL SS  SGS HDSLATSF
Sbjct: 430 NNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSF 489

Query: 485 QGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVNQDVQTDI 488
           Q VRVDEG NQS  +DTDP N E TT++QSSES D S LTNGE NQDVQTDI
Sbjct: 490 QRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 540

[Close]

BLAST of Carg17211 vs. NCBI nr
Match: XP_008466467.1 (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 519.6 bits (1337), Expect = 1.1e-143
Identity = 363/539 (67.35%), Postives = 392/539 (72.73%), Query Frame = 0


Query: 5   NHRSPSPTSFKGDNT--YEFPPKNHLCAWAAVVRGEPELIS---QSPL-SXXXXXXXXXX 64
           N RSPS TSF GDNT   EF  KN    WA VVRGEPE IS   QS L  XXXXXXXXXX
Sbjct: 10  NRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLXXXXXXXXXXXX 69

Query: 65  XXXXXXXXPAPTSDFFASSE--------------------------EGGPVMGADSWPDL 124
           XXXXXXXX    SD F SSE                          EGG VMGADSWP L
Sbjct: 70  XXXXXXXXXXXPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSVMGADSWPAL 129

Query: 125 AESAKASPKLAVDSPSK----------SGPTIVPPQRQATNNAKSDPSLKHPV------- 184
           AESA+ASPKL VDSP K           GP  VPPQRQATNNAKS+P+LK+PV       
Sbjct: 130 AESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVPRLRXX 189

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP----CSMMPAIPDPSHGEP 244
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFP+FQ+P    C+M+PAIPDPS GEP
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPLFQVPPNSYCNMIPAIPDPSSGEP 249

Query: 245 LFRSNNRH--PRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRG 304
            FRS N +  PRA+AGFVPQ NF +D+ NFFPRG+LA HPR +GHY NNRGGK R QDRG
Sbjct: 250 PFRSLNPNWDPRAVAGFVPQLNFGTDHRNFFPRGHLAFHPRVDGHYHNNRGGK-RGQDRG 309

Query: 305 VYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVYVPTWPLETYRG 364
           +Y NARDAHF+QHRP TRGFMRP PP   QFPQ V P+ NPM  PEFVYVPT PLE YRG
Sbjct: 310 IYPNARDAHFQQHRPHTRGFMRPLPPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRG 369

Query: 365 -MPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGF 424
            MPFMP P++    VDP LSAS++ QIEYYFSD NL+ D YLR QMDDQGWVPISLIA F
Sbjct: 370 SMPFMPRPAMNYPTVDPILSASILKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATF 429

Query: 425 SMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDH 484
            MV +LT NI WIIESLR ST +EVQDN+IR+RNEWKKW   SN  RTDL SS  SGS H
Sbjct: 430 PMVLSLTNNIQWIIESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSH 489

Query: 485 DSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVNQDVQTDI 488
           DSLATSFQ VRVDEG NQS  +D DP N E TT++QSSES D S LTNGE NQDVQTDI
Sbjct: 490 DSLATSFQRVRVDEGTNQSMTNDNDPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 547

[Close]

BLAST of Carg17211 vs. TAIR10
Match: AT4G35890.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 96.3 bits (238), Expect = 5.6e-20
Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 310 MPFMPP----PSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLI 369
           MP+M P    P  +    DP L   L  QI+YYFSD NLITD YLR  M+++G+VP+ ++
Sbjct: 348 MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVV 407

Query: 370 AGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSG 429
           AGF  V  LT NI  I+E+L+ S  +EVQ + IRKR+ W+ W+     LR + T S P  
Sbjct: 408 AGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWV-----LRRNPTGSGPQS 467

Query: 430 SDH-DSLATSFQGVRVDEGINQ---STPSDTDPRNTESTTKIQSSESADSSH 474
            D  D++A     + VD+        + S   P    S  + QSS +A  S+
Sbjct: 468 VDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTEALSDDQQQSSSTAPVSN 514

[Close]

BLAST of Carg17211 vs. TAIR10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-17
Identity = 81/271 (29.89%), Postives = 126/271 (46.49%), Query Frame = 0


Query: 191 PLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNR---GGKQRDQD 250
           PL   +  H +   G     NF +   N     N + +PRG G +  NR           
Sbjct: 189 PLNTRDQNHSQRGGGSFGSGNFRNSQRN----RNSSSYPRGEGLHHGNRRXXXXXXXXXX 248

Query: 251 RGVYSNARDAHFRQHRPPTRGFMRPT--------PPCTAQF---PQPVIPYGNPMXPPEF 310
                   D H +  R    G +RP         P  +AQ+   PQ +  YG P+  P++
Sbjct: 249 XXXXXXXXDMHLQPQRGV--GMIRPQMLMGPPSFPASSAQYMAAPQ-LGSYGGPIIYPDY 308

Query: 311 ---VYVPTWPLETYRGM--PFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLR 370
              V++P  P     G+  PF P   +Y    D  L   ++ Q+EYYFS  NL  D +LR
Sbjct: 309 AQHVFMP-HPSPDPMGLVGPF-PLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLR 368

Query: 371 CQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINS 430
            QM+D+GWVP+ +IA F  +  LT NI  I+E+LR+S V+E+Q   +R+R +W K+++  
Sbjct: 369 DQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPR 428

Query: 431 NQLRTDLTSSTPSGSDHDSLATSFQGVRVDE 443
              R   +      S++ SL +  + + + E
Sbjct: 429 EPSR---SGPAAGASNNASLVSQIESMTLSE 447

[Close]

BLAST of Carg17211 vs. TAIR10
Match: AT5G21160.3 (LA RNA-binding protein)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 331 LVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTV 390
           ++ Q+EYYFSD NL  D YL   MD++GWVP  +IAGF  VK +T ++ +I+ +L  S  
Sbjct: 282 VLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNS 341

Query: 391 LEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPS 450
           +EVQ ++IRKR++W  WI  S   +   ++ T    D DS  +      +  G N   PS
Sbjct: 342 VEVQGDQIRKRDKWSDWIPAS---KKSTSAETIGDGDKDSPKS------ITSGDNFGNPS 401

Query: 451 DTDPRNTESTTKIQSSESADSSHLTN 477
               + T S     SSE A SS   N
Sbjct: 402 KGSSKPTVSDF---SSEGAQSSRTNN 415

[Close]

BLAST of Carg17211 vs. TAIR10
Match: AT5G46250.1 (RNA-binding protein)

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-07
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 327 LSASLVNQIEYYFSDTNLITDGYLRCQM--DDQGWVPISLIAGFSMVKNLTTNILWIIES 386
           L+  ++ Q+EYYFSD NL TD +L   M  + +G+VPIS IA F  +K LT +   I+ +
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 387 LRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 436
           L+ S+ L V  +  + +       I   ++ T L  + P    ++++   F
Sbjct: 163 LKESSFLVVSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIF 213

[Close]

BLAST of Carg17211 vs. TAIR10
Match: AT2G43970.1 (RNA-binding protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-05
Identity = 37/126 (29.37%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 331 LVNQIEYYFSDTNLITDGYLR---CQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRT 390
           +VNQ+EYYFSD NL T  +L    C+ D +G+VPI ++A F  +K +  N   +   L+ 
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICK-DPEGYVPIHVVASFKKIKAVINNNSQLAAVLQN 256

Query: 391 STVLEVQDN--RIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGIN 450
           S  L V ++  ++R+ +   +  I   Q R  +  + P    + +L   F  V   + I 
Sbjct: 257 SAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIR 316

Query: 451 QSTPSD 452
              P +
Sbjct: 317 TCQPQN 321

[Close]

BLAST of Carg17211 vs. Swiss-Prot
Match: sp|Q94K80|LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-18
Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 310 MPFMPP----PSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLI 369
           MP+M P    P  +    DP L   L  QI+YYFSD NLITD YLR  M+++G+VP+ ++
Sbjct: 348 MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVV 407

Query: 370 AGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSG 429
           AGF  V  LT NI  I+E+L+ S  +EVQ + IRKR+ W+ W+     LR + T S P  
Sbjct: 408 AGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWV-----LRRNPTGSGPQS 467

Query: 430 SDH-DSLATSFQGVRVDEGINQ---STPSDTDPRNTESTTKIQSSESADSSH 474
            D  D++A     + VD+        + S   P    S  + QSS +A  S+
Sbjct: 468 VDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTEALSDDQQQSSSTAPVSN 514

[Close]

BLAST of Carg17211 vs. Swiss-Prot
Match: sp|Q8RWR2|LRP1B_ARATH (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-16
Identity = 81/271 (29.89%), Postives = 126/271 (46.49%), Query Frame = 0


Query: 191 PLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNR---GGKQRDQD 250
           PL   +  H +   G     NF +   N     N + +PRG G +  NR           
Sbjct: 188 PLNTRDQNHSQRGGGSFGSGNFRNSQRN----RNSSSYPRGEGLHHGNRRXXXXXXXXXX 247

Query: 251 RGVYSNARDAHFRQHRPPTRGFMRPT--------PPCTAQF---PQPVIPYGNPMXPPEF 310
                   D H +  R    G +RP         P  +AQ+   PQ +  YG P+  P++
Sbjct: 248 XXXXXXXXDMHLQPQRGV--GMIRPQMLMGPPSFPASSAQYMAAPQ-LGSYGGPIIYPDY 307

Query: 311 ---VYVPTWPLETYRGM--PFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLR 370
              V++P  P     G+  PF P   +Y    D  L   ++ Q+EYYFS  NL  D +LR
Sbjct: 308 AQHVFMP-HPSPDPMGLVGPF-PLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLR 367

Query: 371 CQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINS 430
            QM+D+GWVP+ +IA F  +  LT NI  I+E+LR+S V+E+Q   +R+R +W K+++  
Sbjct: 368 DQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPR 427

Query: 431 NQLRTDLTSSTPSGSDHDSLATSFQGVRVDE 443
              R   +      S++ SL +  + + + E
Sbjct: 428 EPSR---SGPAAGASNNASLVSQIESMTLSE 446

[Close]

BLAST of Carg17211 vs. Swiss-Prot
Match: sp|Q659C4|LAR1B_HUMAN (La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-15
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 327 LSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLR 386
           L   +  QIEYYFS  NL  D +LR +MD+QG++PISLIAGF  V+ LTTN+  I+E+L+
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALK 274

Query: 387 TSTVLEVQDNRIRKRNEWKKWII 410
            ST +E+ D ++RK+ E +KW I
Sbjct: 275 DSTEVEIVDEKMRKKIEPEKWPI 297

[Close]

BLAST of Carg17211 vs. Swiss-Prot
Match: sp|Q940X9|LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-14
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 331 LVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTV 390
           ++ Q+EYYFSD NL  D YL   MD++GWVP  +IAGF  VK +T ++ +I+ +L  S  
Sbjct: 282 VLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNS 341

Query: 391 LEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPS 450
           +EVQ ++IRKR++W  WI  S   +   ++ T    D DS  +      +  G N   PS
Sbjct: 342 VEVQGDQIRKRDKWSDWIPAS---KKSTSAETIGDGDKDSPKS------ITSGDNFGNPS 401

Query: 451 DTDPRNTESTTKIQSSESADSSHLTN 477
               + T S     SSE A SS   N
Sbjct: 402 KGSSKPTVSDF---SSEGAQSSRTNN 415

[Close]

BLAST of Carg17211 vs. Swiss-Prot
Match: sp|Q6PKG0|LARP1_HUMAN (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-11
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 334 QIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEV 393
           QIEYYFS  NL  D +LR +MD  G++PI+LIA F  V+ LTT+I  I  +L+ S V+E+
Sbjct: 410 QIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEI 469

Query: 394 QDNRIRKRNEWKKW 408
            D ++R+R E +KW
Sbjct: 470 VDEKVRRREEPEKW 483

[Close]

BLAST of Carg17211 vs. TrEMBL
Match: tr|A0A0A0LH68|A0A0A0LH68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873810 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.2e-147
Identity = 365/532 (68.61%), Postives = 392/532 (73.68%), Query Frame = 0


Query: 5   NHRSPSPTSFKGDNT--YEFPPKNHLCAWAAVVRGEPELIS---QSPL-SXXXXXXXXXX 64
           NHRSPS TS  GDNT   EF  KN    WA VVRGEPE IS   QS L  XXXXXXXXXX
Sbjct: 10  NHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLXXXXXXXXXXXX 69

Query: 65  XXXXXXXXPAPTSDFFASSE------------------------EGGPVMGADSWPDLAE 124
           XXXXXXXX    SD F SSE                        EGG VMGADSWP LAE
Sbjct: 70  XXXXXXXXXXXPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMGADSWPALAE 129

Query: 125 SAKASPKLAVDSPSK----------SGPTIVPPQRQATNNAKSDPSLKHP----VXXXXX 184
           SA+ASPKL VDSP K           GP  VPPQRQATNNAKS+P+LK+P     XXXXX
Sbjct: 130 SARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPXXXXXXXXXX 189

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP----CSMMPAIPDPSHGEPLFRSN 244
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQ+     C+M+PAIPDPS GEPLFRS 
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSP 249

Query: 245 NRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARD 304
           N  PRA+AGFVPQ NF +D+ NFFPRGN  LHPRG+ HY NNRGGK R QDRG+Y NARD
Sbjct: 250 NWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGK-RGQDRGIYFNARD 309

Query: 305 AHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVYVPTWPLETYR-GMPFMPP 364
           AHF+QHRP TRGFMRP PP T QFPQ V P+ NPM  PEFVYVPT PLE YR G+PFMP 
Sbjct: 310 AHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPR 369

Query: 365 PSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGFSMVKNLT 424
           P++    VDPTLSAS+V QIEYYFSD NL+ D YLR QMDDQGWVPISLIA F MV +LT
Sbjct: 370 PAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLT 429

Query: 425 TNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSF 484
            NI WI+ESLRTST +EVQD +IR+RNEWKKW   SN  RTDL SS  SGS HDSLATSF
Sbjct: 430 NNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSF 489

Query: 485 QGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVNQDVQTDI 488
           Q VRVDEG NQS  +DTDP N E TT++QSSES D S LTNGE NQDVQTDI
Sbjct: 490 QRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 540

[Close]

BLAST of Carg17211 vs. TrEMBL
Match: tr|A0A1S3CRB5|A0A1S3CRB5_CUCME (la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103503862 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 7.5e-144
Identity = 363/539 (67.35%), Postives = 392/539 (72.73%), Query Frame = 0


Query: 5   NHRSPSPTSFKGDNT--YEFPPKNHLCAWAAVVRGEPELIS---QSPL-SXXXXXXXXXX 64
           N RSPS TSF GDNT   EF  KN    WA VVRGEPE IS   QS L  XXXXXXXXXX
Sbjct: 10  NRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLXXXXXXXXXXXX 69

Query: 65  XXXXXXXXPAPTSDFFASSE--------------------------EGGPVMGADSWPDL 124
           XXXXXXXX    SD F SSE                          EGG VMGADSWP L
Sbjct: 70  XXXXXXXXXXXPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSVMGADSWPAL 129

Query: 125 AESAKASPKLAVDSPSK----------SGPTIVPPQRQATNNAKSDPSLKHPV------- 184
           AESA+ASPKL VDSP K           GP  VPPQRQATNNAKS+P+LK+PV       
Sbjct: 130 AESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVPRLRXX 189

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP----CSMMPAIPDPSHGEP 244
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFP+FQ+P    C+M+PAIPDPS GEP
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPLFQVPPNSYCNMIPAIPDPSSGEP 249

Query: 245 LFRSNNRH--PRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRG 304
            FRS N +  PRA+AGFVPQ NF +D+ NFFPRG+LA HPR +GHY NNRGGK R QDRG
Sbjct: 250 PFRSLNPNWDPRAVAGFVPQLNFGTDHRNFFPRGHLAFHPRVDGHYHNNRGGK-RGQDRG 309

Query: 305 VYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQPVIPYGNPMXPPEFVYVPTWPLETYRG 364
           +Y NARDAHF+QHRP TRGFMRP PP   QFPQ V P+ NPM  PEFVYVPT PLE YRG
Sbjct: 310 IYPNARDAHFQQHRPHTRGFMRPLPPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRG 369

Query: 365 -MPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVPISLIAGF 424
            MPFMP P++    VDP LSAS++ QIEYYFSD NL+ D YLR QMDDQGWVPISLIA F
Sbjct: 370 SMPFMPRPAMNYPTVDPILSASILKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATF 429

Query: 425 SMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDH 484
            MV +LT NI WIIESLR ST +EVQDN+IR+RNEWKKW   SN  RTDL SS  SGS H
Sbjct: 430 PMVLSLTNNIQWIIESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSH 489

Query: 485 DSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVNQDVQTDI 488
           DSLATSFQ VRVDEG NQS  +D DP N E TT++QSSES D S LTNGE NQDVQTDI
Sbjct: 490 DSLATSFQRVRVDEGTNQSMTNDNDPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 547

[Close]

BLAST of Carg17211 vs. TrEMBL
Match: tr|M5Y7L2|M5Y7L2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018923mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.4e-73
Identity = 212/429 (49.42%), Postives = 266/429 (62.00%), Query Frame = 0


Query: 83  VMGADSWPDLAESAKASPKLAVDSPSKS---------------GPTIV---PPQRQATNN 142
           VMGA SWP L+ES +ASPKL  DS SK+                P I      +R +TNN
Sbjct: 121 VMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNN 180

Query: 143 A-------KSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPC 202
           A        + P+ + P   XXXXXXXXXXXXX        XXXXXXXXXXX        
Sbjct: 181 AXXXXXXXXAFPARQRP--SXXXXXXXXXXXXXHSGFGHPPXXXXXXXXXXXXXXXNGYG 240

Query: 203 SMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQN 262
           +++P +PDPS  +P FR N+   R + GFV Q++ V+D+ N   RGN   HPRG+G Y N
Sbjct: 241 NLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDHRNNSRRGNFGPHPRGDGPYHN 300

Query: 263 NRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQF-PQPVIPYGNPM-XPPE 322
           N GGK RDQDRG Y NARDAH  QHR P RG +RP PP TA F PQP  P+ NPM  P E
Sbjct: 301 NHGGK-RDQDRGNYMNARDAHMHQHRAPPRGLVRPAPPNTAAFAPQPARPFANPMGFPGE 360

Query: 323 FVYVPTWPLETYRGMPFM---PPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRC 382
           FVY+PT PLE  RGMPF+   P P+++    +  L + +VNQI+YYFSD NLI D +LR 
Sbjct: 361 FVYIPTLPLEPMRGMPFISQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRS 420

Query: 383 QMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSN 442
            MD QGWVPISLIA F  VK+LTTNI  I++SLR S+++EV D+++R+ NEW KWI   +
Sbjct: 421 NMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGS 480

Query: 443 QLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESADSS 482
           QL  +  SS+P    H++LATSF+ + V+E      PS T      +TT+  S+ESA  S
Sbjct: 481 QLPFESGSSSPGVLSHNTLATSFEKMTVEE----EAPSQT------NTTESCSTESAGLS 536

[Close]

BLAST of Carg17211 vs. TrEMBL
Match: tr|A0A251R8G4|A0A251R8G4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G361000 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 210/430 (48.84%), Postives = 267/430 (62.09%), Query Frame = 0


Query: 83  VMGADSWPDLAESAKASPKLAVDSPSKS---------------GPTIV---PPQRQATNN 142
           VMGA SWP L+ES +ASPKL  DS SK+                P I      +R +TNN
Sbjct: 123 VMGAVSWPALSESTRASPKLPADSSSKTVSDATVTHGSVSVSQAPVITHSPNSKRHSTNN 182

Query: 143 A-------KSDPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIPC 202
           A        + P+ + P   XXXXXXXXXXXXX        XXXXXXXXXXX        
Sbjct: 183 AXXXXXXXXAFPARQRP--SXXXXXXXXXXXXXHSGFGHPPXXXXXXXXXXXXXXXNGYG 242

Query: 203 SMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQN 262
           +++P +PDPS  +P FR N+   R + GFV Q++ V+D+ N   RGN   HPRG+G Y N
Sbjct: 243 NLVPTMPDPSSRDPSFRGNSWDVRPVGGFVTQSHQVNDHRNNSRRGNFGPHPRGDGPYHN 302

Query: 263 NRGGKQRDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQF-PQPVIPYGNPM-XPPE 322
           N GGK RDQDRG Y NARDAH  QHR P RG +RP PP TA F PQP  P+ NPM  P E
Sbjct: 303 NHGGK-RDQDRGNYMNARDAHMHQHRAPPRGLVRPAPPNTAAFAPQPARPFANPMGFPGE 362

Query: 323 FVYVPTWPLETYRGMPFM---PPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRC 382
           FVY+PT PLE  RGMPF+   P P+++    +  L + +VNQI+YYFSD NLI D +LR 
Sbjct: 363 FVYIPTLPLEPMRGMPFISQAPHPTMFIPVAESPLPSLIVNQIDYYFSDANLIKDDFLRS 422

Query: 383 QMDDQGWVPISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSN 442
            MD QGWVPISLIA F  VK+LTTNI  I++SLR S+++EV D+++R+ NEW KWI   +
Sbjct: 423 NMDVQGWVPISLIANFPRVKSLTTNIQLILDSLRASSIVEVHDDKVRRLNEWMKWIPAGS 482

Query: 443 QLRTDLTSSTPSGSDHDSLATSFQGVRV-DEGINQSTPSDTDPRNTESTTKIQSSESADS 482
           QL  +  SS+P    H++LATSF+ + V +E  +Q+  +     N+ S  +  S+ESA  
Sbjct: 483 QLPFESGSSSPGVLSHNTLATSFEKMTVEEEAPSQTNTTGKLESNSVSIPESCSTESAGL 542

[Close]

BLAST of Carg17211 vs. TrEMBL
Match: tr|A0A2I4H6L2|A0A2I4H6L2_9ROSI (la-related protein 1C-like OS=Juglans regia OX=51240 GN=LOC109013957 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.0e-71
Identity = 210/422 (49.76%), Postives = 258/422 (61.14%), Query Frame = 0


Query: 79  EGGPVMGADSWPDLAESAKASPKLAVDSPS----------KSGPTI-VPPQRQATNNAKS 138
           E G VM A  WP L+ES KA PK +VDS S            GP I   PQ+QATNNA  
Sbjct: 120 EVGSVMDAAFWPALSESTKALPKSSVDSSSNIVTDASFSTSQGPVIPESPQKQATNNANP 179

Query: 139 DPSLKHPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVFQIP----CSMMPAI 198
           + +  H +         XXXXXXXXXXXXXXXXXXXXXXXXXFPVF+I      +M+P +
Sbjct: 180 NSTTNH-IFPVRQRSMKXXXXXXXXXXXXXXXXXXXXXXXXXFPVFRIAPNGYPNMVPGV 239

Query: 199 PDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQ 258
           PDPSH E  +RS++   R   GFV  ++  +D+ N F RGN   H RG+G Y NN GG+ 
Sbjct: 240 PDPSHREFPYRSSHWETRPAGGFVSPSHSANDHRNTFRRGNFGPHQRGDGTYHNNPGGR- 299

Query: 259 RDQDRGVYSNARDAHFRQHRPPTRGFMRPTPPCTAQFPQP--VIPYGNPMXPPEFVYVPT 318
           RD DRG Y NARD H + HR P RGF R   P  A F  P  V P+ NPM  PEF Y+P 
Sbjct: 300 RDHDRGNYGNARDVHLQPHRAPPRGFGRHPQPNAAAFVNPPMVRPFVNPMGFPEFYYIPP 359

Query: 319 WPLETYRGMPFMPPPSVYNSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCQMDDQGWVP 378
             +E YR  PF+P P        P L A LV+QI YYF D NL+TD +LR  MDDQGWVP
Sbjct: 360 VSMEPYR--PFIPHPLPLLMPEPPPLPALLVHQINYYFGDNNLVTDDFLRSHMDDQGWVP 419

Query: 379 ISLIAGFSMVKNLTTNILWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSS 438
           I+LIA F  VK L+TNI +I++SL+ ST++EVQD+++RKRN+WKKWI  S  L +D  S 
Sbjct: 420 ITLIASFPRVKKLSTNIKYILDSLKASTIVEVQDDKVRKRNDWKKWIPASALLPSDSGSV 479

Query: 439 TPSGSDHDSLATSFQGVRVDE-GINQSTPSDTDPRNTESTTKIQSSESADSSHLTNGEVN 483
           +P+ S HD L TSFQ + V+E   NQS         +E  T    +ES   S + NGEV 
Sbjct: 480 SPNNSSHDRLVTSFQKITVEEVDTNQSGVIVKADPISEPVTGRCLTESTGESQIPNGEVT 537

The following BLAST results are available for this feature:

BLAST of Carg17211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941059.1	7.4e-236	96.74	la-related protein 1C-like [Cucurbita moschata]	[more]
XP_022982500.1	2.5e-228	94.67	la-related protein 1B-like [Cucurbita maxima]	[more]
XP_023525275.1	6.1e-206	89.37	la-related protein 1C-like [Cucurbita pepo subsp. pepo]	[more]
XP_004136486.1	6.4e-147	68.61	PREDICTED: la-related protein 1C [Cucumis sativus] >KGN60052.1 hypothetical prot...	[more]
XP_008466467.1	1.1e-143	67.35	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]

BLAST of Carg17211 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35890.1	5.6e-20	38.95	winged-helix DNA-binding transcription factor family protein	[more]
AT5G66100.1	1.2e-17	29.89	winged-helix DNA-binding transcription factor family protein	[more]
AT5G21160.3	1.4e-15	38.36	LA RNA-binding protein	[more]
AT5G46250.1	9.3e-07	31.53	RNA-binding protein	[more]
AT2G43970.1	1.0e-05	29.37	RNA-binding protein	[more]

BLAST of Carg17211 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94K80\|LRP1C_ARATH	1.0e-18	38.95	La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1	[more]
sp\|Q8RWR2\|LRP1B_ARATH	2.1e-16	29.89	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]
sp\|Q659C4\|LAR1B_HUMAN	6.8e-15	51.81	La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2	[more]
sp\|Q940X9\|LRP1A_ARATH	2.6e-14	38.36	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]
sp\|Q6PKG0\|LARP1_HUMAN	1.2e-11	50.00	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2	[more]

BLAST of Carg17211 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH68\|A0A0A0LH68_CUCSA	4.2e-147	68.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873810 PE=4 SV=1	[more]
tr\|A0A1S3CRB5\|A0A1S3CRB5_CUCME	7.5e-144	67.35	la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103503862 PE=4 SV=1	[more]
tr\|M5Y7L2\|M5Y7L2_PRUPE	1.4e-73	49.42	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018923mg PE=4 SV=1	[more]
tr\|A0A251R8G4\|A0A251R8G4_PRUPE	1.2e-72	48.84	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G361000 PE=4 SV=1	[more]
tr\|A0A2I4H6L2\|A0A2I4H6L2_9ROSI	1.0e-71	49.76	la-related protein 1C-like OS=Juglans regia OX=51240 GN=LOC109013957 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036388	WH-like_DNA-bd_sf
IPR006630	La_HTH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17211-RA	Carg17211-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 325..403 e-value: 1.9E-26 score: 103.8
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 332..386 e-value: 2.2E-20 score: 72.3
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 321..410 score: 25.135
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 318..413 e-value: 1.7E-29 score: 103.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 418..487
None	No IPR available	PANTHER	PTHR22792:SF76	LA-RELATED PROTEIN 1	coord: 86..470
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 86..470
None	No IPR available	CDD	cd07323	LAM	coord: 331..400 e-value: 3.82591E-27 score: 102.995
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 324..411

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17211	Cla007435	Watermelon (97103) v1	carwmB0946
Carg17211	Csa3G873810	Cucumber (Chinese Long) v2	carcuB0961
Carg17211	MELO3C003736	Melon (DHL92) v3.5.1	carmeB0928
Carg17211	ClCG05G015530	Watermelon (Charleston Gray)	carwcgB0921
Carg17211	CSPI03G43570	Wild cucumber (PI 183967)	carcpiB0984
Carg17211	Cucsa.343170	Cucumber (Gy14) v1	carcgyB1066
Carg17211	CmaCh01G019850	Cucurbita maxima (Rimu)	carcmaB1293
Carg17211	CmoCh01G020430	Cucurbita moschata (Rifu)	carcmoB1263
Carg17211	Lsi04G017660	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17211	Cp4.1LG02g08190	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17211	CsGy3G041100	Cucumber (Gy14) v2	carcgybB0934
Carg17211	MELO3C003736.2	Melon (DHL92) v3.6.1	carmedB0934
Carg17211	CsaV3_3G046030	Cucumber (Chinese Long) v3	carcucB0989
Carg17211	Cla97C05G096570	Watermelon (97103) v2	carwmbB0995
Carg17211	Bhi09G001769	Wax gourd	carwgoB1097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17211	Silver-seed gourd	carcarB125
Carg17211	Cucurbita maxima (Rimu)	carcmaB1291
Carg17211	Cucurbita moschata (Rifu)	carcmoB1261
Carg17211	Cucurbita pepo (Zucchini)	carcpeB1310