CmaCh01G005390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G005390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionFASCICLIN-like arabinogalactan-protein 11
LocationCma_Chr01 : 2803973 .. 2805002 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGGTCCTTCCTCTTCACCGCCACAACACCAAAATAATCATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAATACTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGTATTACTATCACAAAAACGCTCACTTTTAATAATGTTTGTGTCTTTCGTTAGCTATCGTATTCACTATTTCTTGTAAAAAACAGGGACGCTCAATTCCTTGAGCGACCAAGAAAAGGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCGGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTCGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCATCTTCCAGCCCCGTCCCCCGCCTCCAGCTCCAGCACCGGATAACTCCAAGGAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCTGCCGATGACAACTCTGCCGCCGTGGCTCTCACCAGAATGTCGGTGGTCTCGGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGATTGAATTTGCTGGGTGTTGTTTGGTGTGGATAAATTAATATTGATTTGTGTTGTTGTTTTGATTTAGGGTATTTTCTGTTTTTTGTTCTTTTTAAGGTTTGTGTTAAATTTATTTGAAGAGAATTATTAAAATAAATGTATGATAATTTTTATATTAAAAGATTTGTTAATAGAATTATTAATTGGG

mRNA sequence

TTTGGGTCCTTCCTCTTCACCGCCACAACACCAAAATAATCATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAATACTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGGACGCTCAATTCCTTGAGCGACCAAGAAAAGGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCGGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTCGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCATCTTCCAGCCCCGTCCCCCGCCTCCAGCTCCAGCACCGGATAACTCCAAGGAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCTGCCGATGACAACTCTGCCGCCGTGGCTCTCACCAGAATGTCGGTGGTCTCGGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGATTGAATTTGCTGGGTGTTGTTTGGTGTGGATAAATTAATATTGATTTGTGTTGTTGTTTTGATTTAGGGTATTTTCTGTTTTTTGTTCTTTTTAAGGTTTGTGTTAAATTTATTTGAAGAGAATTATTAAAATAAATGTATGATAATTTTTATATTAAAAGATTTGTTAATAGAATTATTAATTGGG

Coding sequence (CDS)

ATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAATACTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGGACGCTCAATTCCTTGAGCGACCAAGAAAAGGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCGGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTCGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCATCTTCCAGCCCCGTCCCCCGCCTCCAGCTCCAGCACCGGATAACTCCAAGGAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCTGCCGATGACAACTCTGCCGCCGTGGCTCTCACCAGAATGTCGGTGGTCTCGGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGA

Protein sequence

MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIFQPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVSAVAAAGMLVWISS
Homology
[Close]
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-61
Identity = 132/235 (56.17%), Postives = 177/235 (75.32%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCSG----QSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQV 61
           ++L  L+  +LLLL    G     SPA AP PP P N+TKILEKAGQFTV IRLLKST V
Sbjct: 3   HSLIILLFTVLLLLTTTPGILSQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGV 62

Query: 62  ANQINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQ 121
           ANQ+  QLN+S++ +T+FAP+D++F+ L++GTLNSL+D+++VEL+QFH+IP+++S SNFQ
Sbjct: 63  ANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQ 122

Query: 122 TVSNPVITQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLK 181
           T+SNP+ TQAGD+ +  FPLNVTTSGN+VN+++G+ NT++SG VY+D QLA+YQVD VL 
Sbjct: 123 TISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLL 182

Query: 182 PIGIFQPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVSAVAAA 231
           P  +F PRPP PAPAP  SK K K   +   DS+ D+S A A   +  V +V  A
Sbjct: 183 PQQVFDPRPPAPAPAPSVSKSKKK---KDDSDSSSDDSPADASFALRNVGSVCDA 234

[Close]
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-53
Identity = 124/243 (51.03%), Postives = 171/243 (70.37%), Query Frame = 1 

Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINT 63
           +FS +    L++    GQ+PA  PGP  P NIT ILEKAGQFT+ IRLLKSTQ ++QINT
Sbjct: 8   IFSNLFIFFLVIATTYGQAPA--PGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 64  QLNDSNSE-LTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNP 123
           QLN S+S  LT+FAPTDNAF++L+SGTLNSLSDQ+KV+L+QFH++P  +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 124 VITQAGDAY--EFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 183
           + TQAGD    +FPLN+T+SGN VN++TG+V+ +++ +VY+D QLA+YQVD VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 187

Query: 184 QPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVAL-------TRMSVVSAVAAAGML 237
                 PAPAP+     +K  +    D  D   ++ A         R++ V+A+AA+  L
Sbjct: 188 -GSSVAPAPAPEKGGSVSKGSASGGDDGGDSTDSSDAERTGFGFGIRITTVAAIAASSSL 246

[Close]
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match: FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 101/229 (44.10%), Postives = 137/229 (59.83%), Query Frame = 1 

Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINT 63
           L  L++  + L    + Q  A APGP  P+NIT ILEK GQF  LIRLL +TQ+ NQIN 
Sbjct: 6   LLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQINI 65

Query: 64  QLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPV 123
           Q+N S+  +T+ APTDNAF  L+ GTLN LS  ++V+L+ +H+ P F +L +  +VSNPV
Sbjct: 66  QINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPV 125

Query: 124 ITQAGD---AYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 183
            TQA        + LN T  GN VNVSTG+V T +S ++  +  LA+Y VD VL P  +F
Sbjct: 126 RTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185

Query: 184 QPR------PPPPAPAPD-----NSKEKAKAISESPKDSADDNSAAVAL 219
             R      PPP + +PD      S +KA A SES K  + + +  + L
Sbjct: 186 GERKISPMAPPPKSKSPDVSDDSESSKKAAAPSESEKSGSGEMNTGLGL 234

[Close]
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.2e-35
Identity = 95/221 (42.99%), Postives = 130/221 (58.82%), Query Frame = 1 

Query: 7   LIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQLN 66
           L+I  +LL  + + Q  A AP P  P+N+T ILEK GQFT  I LL  TQV +Q+N Q+N
Sbjct: 12  LLIAAVLLATKATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVN 71

Query: 67  DSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQ 126
            S+  +T+FAPTDNAF  L+ GTLN LS  ++V+L+ +H+ P + S+ +  +VSNPV TQ
Sbjct: 72  SSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQ 131

Query: 127 AG--DAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF-QPR 186
           A   D   + LN T   N +NVSTG V T IS ++     LA+Y VD VL P  +F + +
Sbjct: 132 ASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMFGEHK 191

Query: 187 PPPPAPAP--------DNSKEKAKAISESPKDSADDNSAAV 217
             P APAP        D+S    KA S S K  + +    +
Sbjct: 192 LSPIAPAPKSKSGGVTDDSGSTKKAASPSDKSGSGEKKVGL 232

[Close]
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34
Identity = 100/235 (42.55%), Postives = 140/235 (59.57%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCSGQSPAEAPGPPP---PMNITKILEKAGQFTVLIRLLKSTQVA 61
           ++LFS ++ L+ L      QS   AP P     P+N+T ILE   QFT LI+LL +TQV 
Sbjct: 3   SSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVG 62

Query: 62  NQINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQT 121
            Q++ QLN S+  +T+FAPTDNAF+ L+ GTLNSL+ Q++++L+ +H+IP + SLS+   
Sbjct: 63  FQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLL 122

Query: 122 VSNPVITQA--GDAYEFPLNVT--TSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVL 181
            SNPV TQA   D   F LN T     N VNVSTG+V T I+  +     LA+Y VDSVL
Sbjct: 123 ASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVL 182

Query: 182 KPIGIFQPRPPPP-APAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVSAVA 229
            P  +F  +  P  APAP +S   + A S +  D      ++V  T + +V + A
Sbjct: 183 LPEELFGTKTTPTGAPAPKSSTSSSDADSPAADDEHKSAGSSVKRTSLGIVVSFA 237

[Close]
BLAST of CmaCh01G005390 vs. TrEMBL
Match: A0A0A0LVA0_CUCSA (Arabinogalactan protein 2 OS=Cucumis sativus GN=Csa_1G085380 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.9e-99
Identity = 200/241 (82.99%), Postives = 215/241 (89.21%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 61
           N+LFSL+I L+     CS GQSPAEAPGPPPPMNITKILEK GQF VLIRLLK+TQVANQ
Sbjct: 3   NSLFSLVILLIFFFLDCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQVANQ 62

Query: 62  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 121
           INTQLNDSNSELTLFAPTDNAFS LQSGTLNSL+DQEKVELLQFHMIP FLSLSNFQT+S
Sbjct: 63  INTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTIS 122

Query: 122 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 181
           NPV TQAGDAYEFPLNVTTSGNSVNVS+GLVNTSISGTVYTDNQLAIYQ+DSVLKPIG+F
Sbjct: 123 NPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKPIGVF 182

Query: 182 QPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVS---AVAAAGMLVWIS 239
           QPRPPPPAPAP+ SK+KAK  SESPKDS DDNS+AV L  +SV+S   AV    MLVWI+
Sbjct: 183 QPRPPPPAPAPEKSKKKAKGNSESPKDSDDDNSSAVPLAGVSVISTGAAVVVGIMLVWIN 242

[Close]
BLAST of CmaCh01G005390 vs. TrEMBL
Match: A0A061GV39_THECC (FASCICLIN-like arabinogalactan-protein 11 OS=Theobroma cacao GN=TCM_041052 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.3e-67
Identity = 144/228 (63.16%), Postives = 182/228 (79.82%), Query Frame = 1 

Query: 7   LIIFLLLLLRRCS-------GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVAN 66
           ++ FLLL   RC          +PA AP PP P N+TKILEKAGQFT+ IRLLK+T VAN
Sbjct: 10  ILSFLLLSFLRCPQTLAQAPALAPALAPAPPGPTNVTKILEKAGQFTLFIRLLKATAVAN 69

Query: 67  QINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTV 126
           Q+  QLN++N+ +T+FAPTDNAFS+L+SGTLNSLSD++KVEL+QFH+IP +LS + FQT+
Sbjct: 70  QLLGQLNNTNNGMTIFAPTDNAFSSLKSGTLNSLSDEQKVELVQFHIIPTYLSSTQFQTI 129

Query: 127 SNPVITQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPI 186
           SNP+ TQAGD+ +  FPLNVTTSGNSVN++TGL NTS+SGT+YTD QLA+YQVD VL+P+
Sbjct: 130 SNPLRTQAGDSADGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQVDKVLQPL 189

Query: 187 GIFQPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVA-LTRMSVV 225
            IF PRPP PAPAP  SK+KA A+++SP D+  DNS AV+ LT  +VV
Sbjct: 190 QIFDPRPPAPAPAPAKSKKKA-AVADSPDDTPADNSKAVSTLTMQNVV 236

[Close]
BLAST of CmaCh01G005390 vs. TrEMBL
Match: A9PAK7_POPTR (Fasciclin-like AGP 15 family protein OS=Populus trichocarpa GN=POPTR_0012s14510g PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.8e-66
Identity = 139/220 (63.18%), Postives = 175/220 (79.55%), Query Frame = 1 

Query: 5   FSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQ 64
           FSLI+  LL       QSPA APGPP P N+TKILEK GQF+V IRLLK+TQ    +N Q
Sbjct: 9   FSLILSFLLHCPPTLAQSPAAAPGPPGPTNVTKILEKGGQFSVFIRLLKATQEDVTLNGQ 68

Query: 65  LNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVI 124
           LN++N+ +T+FAP+DNAFS+L+SGTLNSL+DQEK EL+QFH+IP +LS S FQTVSNP+ 
Sbjct: 69  LNNTNNAITIFAPSDNAFSSLKSGTLNSLNDQEKAELVQFHIIPQYLSSSQFQTVSNPLT 128

Query: 125 TQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIFQPRP 184
           TQAG      LNVTT+GNSVN++TGL NTS+SGT+YTDNQLA+YQVD VL P+ IF P+P
Sbjct: 129 TQAGSGGRLELNVTTTGNSVNITTGLTNTSVSGTIYTDNQLAVYQVDKVLLPVDIFTPKP 188

Query: 185 PPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVV 225
           P PAPAP+  K+++KA +ESP D+ +DNS AV+LT ++ V
Sbjct: 189 PTPAPAPEKPKKRSKA-AESP-DAPEDNSGAVSLTVLNDV 226

[Close]
BLAST of CmaCh01G005390 vs. TrEMBL
Match: W9RYI3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014391 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.8e-65
Identity = 129/195 (66.15%), Postives = 167/195 (85.64%), Query Frame = 1 

Query: 22  SPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQLNDSNSELTLFAPTDNA 81
           +PA++PGP P  +I KIL KAGQFTVL+RLL+STQV +QIN QL+ +NSELTLFAP DNA
Sbjct: 30  APAKSPGPAPSTDIYKILIKAGQFTVLLRLLRSTQVGDQINNQLSSTNSELTLFAPPDNA 89

Query: 82  FSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQAGDAYEFPLNVTTSG 141
           FS+L++GTLN LSDQ+KV+L+QFH++P F+S+SNFQT+SNPV TQA D YE+PLN+TT+G
Sbjct: 90  FSSLKTGTLNQLSDQQKVQLVQFHLVPAFISISNFQTLSNPVQTQAADTYEYPLNITTNG 149

Query: 142 NSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIFQPRPPP--PAPAPDNSKEKAK 201
           + VN++TG+VNT+I+GTVY+DNQLA+YQVD VL+P+GIF PRPPP  PAPAP  SK+KA+
Sbjct: 150 SQVNITTGVVNTTITGTVYSDNQLAVYQVDKVLQPLGIFAPRPPPPAPAPAPPKSKKKAE 209

Query: 202 AISESPKDSADDNSA 215
             ++SP  S D + A
Sbjct: 210 TDTDSPAASVDASDA 224

[Close]
BLAST of CmaCh01G005390 vs. TrEMBL
Match: A9XTK6_GOSHI (Arabinogalactan protein 2 OS=Gossypium hirsutum GN=FLA1 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-65
Identity = 138/231 (59.74%), Postives = 179/231 (77.49%), Query Frame = 1 

Query: 4   LFSLIIFLLLLLRRCS---GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 63
           +F+ +  L+L    CS    QSPA AP P  P N+TKILEKAGQFT+ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQSPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 64  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 123
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL+D++KV+L+QFH++P +L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVQLVQFHIVPTYLTSSQFQTIS 125

Query: 124 NPVITQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIG 183
           NP+ TQAGD+ +  FPLNVTTSGNSVN++TGL NTS+SGT+YTD QLA+YQ+D VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQ 185

Query: 184 IFQPRPPPPAPAPDNSK-EKAKAISESPKDSADDNSAAVALTRMSVVSAVA 229
           IF PRPP PAPAP  SK +KA  +++SP  +  DNS A  L  + +    A
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGVAA 236

[Close]
BLAST of CmaCh01G005390 vs. TAIR10
Match: AT5G60490.1 (AT5G60490.1 FASCICLIN-like arabinogalactan-protein 12)

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-62
Identity = 132/235 (56.17%), Postives = 177/235 (75.32%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCSG----QSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQV 61
           ++L  L+  +LLLL    G     SPA AP PP P N+TKILEKAGQFTV IRLLKST V
Sbjct: 3   HSLIILLFTVLLLLTTTPGILSQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGV 62

Query: 62  ANQINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQ 121
           ANQ+  QLN+S++ +T+FAP+D++F+ L++GTLNSL+D+++VEL+QFH+IP+++S SNFQ
Sbjct: 63  ANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQ 122

Query: 122 TVSNPVITQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLK 181
           T+SNP+ TQAGD+ +  FPLNVTTSGN+VN+++G+ NT++SG VY+D QLA+YQVD VL 
Sbjct: 123 TISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLL 182

Query: 182 PIGIFQPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVSAVAAA 231
           P  +F PRPP PAPAP  SK K K   +   DS+ D+S A A   +  V +V  A
Sbjct: 183 PQQVFDPRPPAPAPAPSVSKSKKK---KDDSDSSSDDSPADASFALRNVGSVCDA 234

[Close]
BLAST of CmaCh01G005390 vs. TAIR10
Match: AT5G03170.1 (AT5G03170.1 FASCICLIN-like arabinogalactan-protein 11)

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-54
Identity = 124/243 (51.03%), Postives = 171/243 (70.37%), Query Frame = 1 

Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINT 63
           +FS +    L++    GQ+PA  PGP  P NIT ILEKAGQFT+ IRLLKSTQ ++QINT
Sbjct: 8   IFSNLFIFFLVIATTYGQAPA--PGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 64  QLNDSNSE-LTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNP 123
           QLN S+S  LT+FAPTDNAF++L+SGTLNSLSDQ+KV+L+QFH++P  +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 124 VITQAGDAY--EFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 183
           + TQAGD    +FPLN+T+SGN VN++TG+V+ +++ +VY+D QLA+YQVD VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 187

Query: 184 QPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVAL-------TRMSVVSAVAAAGML 237
                 PAPAP+     +K  +    D  D   ++ A         R++ V+A+AA+  L
Sbjct: 188 -GSSVAPAPAPEKGGSVSKGSASGGDDGGDSTDSSDAERTGFGFGIRITTVAAIAASSSL 246

[Close]
BLAST of CmaCh01G005390 vs. TAIR10
Match: AT5G44130.1 (AT5G44130.1 FASCICLIN-like arabinogalactan protein 13 precursor)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 101/229 (44.10%), Postives = 137/229 (59.83%), Query Frame = 1 

Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINT 63
           L  L++  + L    + Q  A APGP  P+NIT ILEK GQF  LIRLL +TQ+ NQIN 
Sbjct: 6   LLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQINI 65

Query: 64  QLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPV 123
           Q+N S+  +T+ APTDNAF  L+ GTLN LS  ++V+L+ +H+ P F +L +  +VSNPV
Sbjct: 66  QINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPV 125

Query: 124 ITQAGD---AYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 183
            TQA        + LN T  GN VNVSTG+V T +S ++  +  LA+Y VD VL P  +F
Sbjct: 126 RTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185

Query: 184 QPR------PPPPAPAPD-----NSKEKAKAISESPKDSADDNSAAVAL 219
             R      PPP + +PD      S +KA A SES K  + + +  + L
Sbjct: 186 GERKISPMAPPPKSKSPDVSDDSESSKKAAAPSESEKSGSGEMNTGLGL 234

[Close]
BLAST of CmaCh01G005390 vs. TAIR10
Match: AT1G03870.1 (AT1G03870.1 FASCICLIN-like arabinoogalactan 9)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-36
Identity = 95/221 (42.99%), Postives = 130/221 (58.82%), Query Frame = 1 

Query: 7   LIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQLN 66
           L+I  +LL  + + Q  A AP P  P+N+T ILEK GQFT  I LL  TQV +Q+N Q+N
Sbjct: 12  LLIAAVLLATKATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVN 71

Query: 67  DSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQ 126
            S+  +T+FAPTDNAF  L+ GTLN LS  ++V+L+ +H+ P + S+ +  +VSNPV TQ
Sbjct: 72  SSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQ 131

Query: 127 AG--DAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF-QPR 186
           A   D   + LN T   N +NVSTG V T IS ++     LA+Y VD VL P  +F + +
Sbjct: 132 ASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMFGEHK 191

Query: 187 PPPPAPAP--------DNSKEKAKAISESPKDSADDNSAAV 217
             P APAP        D+S    KA S S K  + +    +
Sbjct: 192 LSPIAPAPKSKSGGVTDDSGSTKKAASPSDKSGSGEKKVGL 232

[Close]
BLAST of CmaCh01G005390 vs. TAIR10
Match: AT2G20520.1 (AT2G20520.1 FASCICLIN-like arabinogalactan 6)

HSP 1 Score: 147.9 bits (372), Expect = 7.9e-36
Identity = 100/235 (42.55%), Postives = 140/235 (59.57%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCSGQSPAEAPGPPP---PMNITKILEKAGQFTVLIRLLKSTQVA 61
           ++LFS ++ L+ L      QS   AP P     P+N+T ILE   QFT LI+LL +TQV 
Sbjct: 3   SSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVG 62

Query: 62  NQINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQT 121
            Q++ QLN S+  +T+FAPTDNAF+ L+ GTLNSL+ Q++++L+ +H+IP + SLS+   
Sbjct: 63  FQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLL 122

Query: 122 VSNPVITQA--GDAYEFPLNVT--TSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVL 181
            SNPV TQA   D   F LN T     N VNVSTG+V T I+  +     LA+Y VDSVL
Sbjct: 123 ASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVL 182

Query: 182 KPIGIFQPRPPPP-APAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVSAVA 229
            P  +F  +  P  APAP +S   + A S +  D      ++V  T + +V + A
Sbjct: 183 LPEELFGTKTTPTGAPAPKSSTSSSDADSPAADDEHKSAGSSVKRTSLGIVVSFA 237

[Close]
BLAST of CmaCh01G005390 vs. NCBI nr
Match: gi|449462077|ref|XP_004148768.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.8e-99
Identity = 200/241 (82.99%), Postives = 215/241 (89.21%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 61
           N+LFSL+I L+     CS GQSPAEAPGPPPPMNITKILEK GQF VLIRLLK+TQVANQ
Sbjct: 3   NSLFSLVILLIFFFLDCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQVANQ 62

Query: 62  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 121
           INTQLNDSNSELTLFAPTDNAFS LQSGTLNSL+DQEKVELLQFHMIP FLSLSNFQT+S
Sbjct: 63  INTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTIS 122

Query: 122 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 181
           NPV TQAGDAYEFPLNVTTSGNSVNVS+GLVNTSISGTVYTDNQLAIYQ+DSVLKPIG+F
Sbjct: 123 NPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKPIGVF 182

Query: 182 QPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVS---AVAAAGMLVWIS 239
           QPRPPPPAPAP+ SK+KAK  SESPKDS DDNS+AV L  +SV+S   AV    MLVWI+
Sbjct: 183 QPRPPPPAPAPEKSKKKAKGNSESPKDSDDDNSSAVPLAGVSVISTGAAVVVGIMLVWIN 242

[Close]
BLAST of CmaCh01G005390 vs. NCBI nr
Match: gi|659072184|ref|XP_008463798.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis melo])

HSP 1 Score: 367.1 bits (941), Expect = 2.4e-98
Identity = 198/241 (82.16%), Postives = 214/241 (88.80%), Query Frame = 1 

Query: 2   NTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 61
           N+LFSL+I L+     CS GQSPAEAPGPPPPMNI+KILEK GQF VLIRLLKSTQVANQ
Sbjct: 3   NSLFSLVILLIFFFIDCSYGQSPAEAPGPPPPMNISKILEKGGQFNVLIRLLKSTQVANQ 62

Query: 62  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 121
           INTQLNDSNSELT+FAPTDNAFS LQSGTLNSL+DQEKVELLQFHMIP FLSLSNFQT+S
Sbjct: 63  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTIS 122

Query: 122 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 181
           NPV TQAGDAYEFPLNVTTSGNSVN+S+GLVNTSISGTVYTDNQLAIYQ+DSVLKPIG+F
Sbjct: 123 NPVRTQAGDAYEFPLNVTTSGNSVNISSGLVNTSISGTVYTDNQLAIYQIDSVLKPIGVF 182

Query: 182 QPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVS---AVAAAGMLVWIS 239
           QPRPPPPAPAP+ SK+KAK ISESPKDS DDNS+AV L  +S  S   AV    MLVWI+
Sbjct: 183 QPRPPPPAPAPEKSKKKAKGISESPKDSDDDNSSAVPLAGISSFSTEAAVVVGIMLVWIN 242

[Close]
BLAST of CmaCh01G005390 vs. NCBI nr
Match: gi|1009115649|ref|XP_015874343.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Ziziphus jujuba])

HSP 1 Score: 276.6 bits (706), Expect = 4.2e-71
Identity = 148/222 (66.67%), Postives = 182/222 (81.98%), Query Frame = 1 

Query: 6   SLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQL 65
           SL++  L      SGQ+PA +PGP  P++I KIL KAGQFT+LIRLL+STQV NQIN+QL
Sbjct: 9   SLLLLFLFHCTTISGQAPAASPGPAAPLDIYKILTKAGQFTILIRLLRSTQVGNQINSQL 68

Query: 66  NDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVIT 125
            DSNSELT FAPTDNAFS+L++GTLNSLSDQ+KV L+QFH+IP+F+S+SNFQT+SNPV T
Sbjct: 69  GDSNSELTFFAPTDNAFSSLKTGTLNSLSDQQKVMLVQFHLIPSFISISNFQTMSNPVQT 128

Query: 126 QAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIFQPR-- 185
           QA + YEFPLN+TTSG+ VN++TGLVNTSISGTVY+DNQLA+YQV+ VL+P+GIF PR  
Sbjct: 129 QASNTYEFPLNITTSGSQVNITTGLVNTSISGTVYSDNQLAVYQVEKVLQPLGIFAPRSL 188

Query: 186 PPPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVVS 226
           PP PAPAP  SK+K+   S+SP  S  D S AV +TR  +VS
Sbjct: 189 PPAPAPAPPKSKKKSATSSDSPVASV-DASGAVGVTRNVLVS 229

[Close]
BLAST of CmaCh01G005390 vs. NCBI nr
Match: gi|590585366|ref|XP_007015428.1| (FASCICLIN-like arabinogalactan-protein 11 [Theobroma cacao])

HSP 1 Score: 263.1 bits (671), Expect = 4.8e-67
Identity = 144/228 (63.16%), Postives = 182/228 (79.82%), Query Frame = 1 

Query: 7   LIIFLLLLLRRCS-------GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVAN 66
           ++ FLLL   RC          +PA AP PP P N+TKILEKAGQFT+ IRLLK+T VAN
Sbjct: 10  ILSFLLLSFLRCPQTLAQAPALAPALAPAPPGPTNVTKILEKAGQFTLFIRLLKATAVAN 69

Query: 67  QINTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTV 126
           Q+  QLN++N+ +T+FAPTDNAFS+L+SGTLNSLSD++KVEL+QFH+IP +LS + FQT+
Sbjct: 70  QLLGQLNNTNNGMTIFAPTDNAFSSLKSGTLNSLSDEQKVELVQFHIIPTYLSSTQFQTI 129

Query: 127 SNPVITQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPI 186
           SNP+ TQAGD+ +  FPLNVTTSGNSVN++TGL NTS+SGT+YTD QLA+YQVD VL+P+
Sbjct: 130 SNPLRTQAGDSADGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQVDKVLQPL 189

Query: 187 GIFQPRPPPPAPAPDNSKEKAKAISESPKDSADDNSAAVA-LTRMSVV 225
            IF PRPP PAPAP  SK+KA A+++SP D+  DNS AV+ LT  +VV
Sbjct: 190 QIFDPRPPAPAPAPAKSKKKA-AVADSPDDTPADNSKAVSTLTMQNVV 236

[Close]
BLAST of CmaCh01G005390 vs. NCBI nr
Match: gi|224122602|ref|XP_002318877.1| (fasciclin-like AGP 15 family protein [Populus trichocarpa])

HSP 1 Score: 259.2 bits (661), Expect = 6.9e-66
Identity = 139/220 (63.18%), Postives = 175/220 (79.55%), Query Frame = 1 

Query: 5   FSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINTQ 64
           FSLI+  LL       QSPA APGPP P N+TKILEK GQF+V IRLLK+TQ    +N Q
Sbjct: 9   FSLILSFLLHCPPTLAQSPAAAPGPPGPTNVTKILEKGGQFSVFIRLLKATQEDVTLNGQ 68

Query: 65  LNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVSNPVI 124
           LN++N+ +T+FAP+DNAFS+L+SGTLNSL+DQEK EL+QFH+IP +LS S FQTVSNP+ 
Sbjct: 69  LNNTNNAITIFAPSDNAFSSLKSGTLNSLNDQEKAELVQFHIIPQYLSSSQFQTVSNPLT 128

Query: 125 TQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIFQPRP 184
           TQAG      LNVTT+GNSVN++TGL NTS+SGT+YTDNQLA+YQVD VL P+ IF P+P
Sbjct: 129 TQAGSGGRLELNVTTTGNSVNITTGLTNTSVSGTIYTDNQLAVYQVDKVLLPVDIFTPKP 188

Query: 185 PPPAPAPDNSKEKAKAISESPKDSADDNSAAVALTRMSVV 225
           P PAPAP+  K+++KA +ESP D+ +DNS AV+LT ++ V
Sbjct: 189 PTPAPAPEKPKKRSKA-AESP-DAPEDNSGAVSLTVLNDV 226

The following BLAST results are available for this feature:
BLAST of CmaCh01G005390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FLA12_ARATH6.7e-6156.17Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 ... [more]
FLA11_ARATH1.8e-5351.03Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 ... [more]
FLA13_ARATH2.1e-3844.10Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 ... [more]
FLA9_ARATH8.2e-3542.99Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV... [more]
FLA6_ARATH1.4e-3442.55Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV... [more]
BLAST of CmaCh01G005390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVA0_CUCSA1.9e-9982.99Arabinogalactan protein 2 OS=Cucumis sativus GN=Csa_1G085380 PE=4 SV=1[more]
A0A061GV39_THECC3.3e-6763.16FASCICLIN-like arabinogalactan-protein 11 OS=Theobroma cacao GN=TCM_041052 PE=4 ... [more]
A9PAK7_POPTR4.8e-6663.18Fasciclin-like AGP 15 family protein OS=Populus trichocarpa GN=POPTR_0012s14510g... [more]
W9RYI3_9ROSA1.8e-6566.15Uncharacterized protein OS=Morus notabilis GN=L484_014391 PE=4 SV=1[more]
A9XTK6_GOSHI3.1e-6559.74Arabinogalactan protein 2 OS=Gossypium hirsutum GN=FLA1 PE=2 SV=1[more]
BLAST of CmaCh01G005390 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60490.13.8e-6256.17 FASCICLIN-like arabinogalactan-protein 12[more]
AT5G03170.11.0e-5451.03 FASCICLIN-like arabinogalactan-protein 11[more]
AT5G44130.11.2e-3944.10 FASCICLIN-like arabinogalactan protein 13 precursor[more]
AT1G03870.14.6e-3642.99 FASCICLIN-like arabinoogalactan 9[more]
AT2G20520.17.9e-3642.55 FASCICLIN-like arabinogalactan 6[more]
BLAST of CmaCh01G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462077|ref|XP_004148768.1|2.8e-9982.99PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis sativus][more]
gi|659072184|ref|XP_008463798.1|2.4e-9882.16PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis melo][more]
gi|1009115649|ref|XP_015874343.1|4.2e-7166.67PREDICTED: fasciclin-like arabinogalactan protein 12 [Ziziphus jujuba][more]
gi|590585366|ref|XP_007015428.1|4.8e-6763.16FASCICLIN-like arabinogalactan-protein 11 [Theobroma cacao][more]
gi|224122602|ref|XP_002318877.1|6.9e-6663.18fasciclin-like AGP 15 family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0008150 biological_process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009733 response to auxin
biological_process GO:0009735 response to cytokinin
biological_process GO:0009739 response to gibberellin
biological_process GO:0009651 response to salt stress
biological_process GO:0090376 seed trichome differentiation
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G005390.1CmaCh01G005390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainGENE3DG3DSA:2.30.180.10coord: 33..176
score: 4.3
IPR000782FAS1 domainPFAMPF02469Fasciclincoord: 44..176
score: 9.8
IPR000782FAS1 domainSMARTSM00554fasc_3coord: 73..177
score: 7.7
IPR000782FAS1 domainPROFILEPS50213FAS1coord: 32..174
score: 21
IPR000782FAS1 domainunknownSSF82153FAS1 domaincoord: 25..176
score: 1.44
NoneNo IPR availablePANTHERPTHR32077FAMILY NOT NAMEDcoord: 1..234
score: 3.8E
NoneNo IPR availablePANTHERPTHR32077:SF10FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12coord: 1..234
score: 3.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G005390Cucsa.207270Cucumber (Gy14) v1cgycmaB0611
CmaCh01G005390Cla005042Watermelon (97103) v1cmawmB429
CmaCh01G005390Csa1G085380Cucumber (Chinese Long) v2cmacuB431
CmaCh01G005390MELO3C005051Melon (DHL92) v3.5.1cmameB391
CmaCh01G005390ClCG03G002250Watermelon (Charleston Gray)cmawcgB404
CmaCh01G005390CSPI01G12740Wild cucumber (PI 183967)cmacpiB434
CmaCh01G005390CmoCh01G005690Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G005390CmoCh13G001870Cucurbita moschata (Rifu)cmacmoB458
CmaCh01G005390Lsi02G014260Bottle gourd (USVL1VR-Ls)cmalsiB417
CmaCh01G005390Cp4.1LG20g08990Cucurbita pepo (Zucchini)cmacpeB483
CmaCh01G005390Cp4.1LG02g12840Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G005390MELO3C005051.2Melon (DHL92) v3.6.1cmamedB451
CmaCh01G005390CsaV3_1G012930Cucumber (Chinese Long) v3cmacucB0518
CmaCh01G005390Cla97C03G053260Watermelon (97103) v2cmawmbB467
CmaCh01G005390Bhi08G000270Wax gourdcmawgoB0595
CmaCh01G005390CsGy1G012780Cucumber (Gy14) v2cgybcmaB110
CmaCh01G005390Carg21061Silver-seed gourdcarcmaB1018
CmaCh01G005390Carg12314Silver-seed gourdcarcmaB0613
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G005390CmaCh13G001840Cucurbita maxima (Rimu)cmacmaB220
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G005390Cucurbita moschata (Rifu)cmacmoB474
CmaCh01G005390Cucurbita moschata (Rifu)cmacmoB476
CmaCh01G005390Wild cucumber (PI 183967)cmacpiB489
CmaCh01G005390Melon (DHL92) v3.5.1cmameB387
CmaCh01G005390Watermelon (Charleston Gray)cmawcgB398
CmaCh01G005390Watermelon (Charleston Gray)cmawcgB399
CmaCh01G005390Watermelon (97103) v1cmawmB454
CmaCh01G005390Watermelon (97103) v1cmawmB455
CmaCh01G005390Cucurbita pepo (Zucchini)cmacpeB470
CmaCh01G005390Cucurbita pepo (Zucchini)cmacpeB500
CmaCh01G005390Bottle gourd (USVL1VR-Ls)cmalsiB398
CmaCh01G005390Bottle gourd (USVL1VR-Ls)cmalsiB401
CmaCh01G005390Cucumber (Gy14) v2cgybcmaB775
CmaCh01G005390Melon (DHL92) v3.6.1cmamedB447
CmaCh01G005390Silver-seed gourdcarcmaB0422
CmaCh01G005390Silver-seed gourdcarcmaB0470
CmaCh01G005390Cucumber (Chinese Long) v3cmacucB0578
CmaCh01G005390Watermelon (97103) v2cmawmbB459
CmaCh01G005390Wax gourdcmawgoB0582
CmaCh01G005390Wax gourdcmawgoB0587
CmaCh01G005390Wax gourdcmawgoB0589
CmaCh01G005390Cucurbita maxima (Rimu)cmacmaB417