Cla005042 (gene) Watermelon (97103) v1

Overview
NameCla005042
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionFasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain
LocationChr3 : 2395098 .. 2397448 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAATAGCCTCTTCTCTCTCATGATATTGCTTATCTTCCTCTTCCTCTTCCTCGGTTGCAGCTATGGGCAGTCGCCGGCGGAAGCTCCGGGGCCTCCGCCGCCGATGAATATCACAAAAATATTGGAAAAGGGTGGCCAATTTAGTGTTCTTATAAGGCTTTTGAAGAGCACTCAAGTTGCCAACCAAATCAACACTCAGCTCAATGACTCCAATTCTGAACTCACCATTTTTGCCCCAACTGATAATGCCTTCTCCAACCTTCAATCTGGTACCTATCATTTTTCTTTTATAATATTATCATTATTTATCGTTTCTTTCTTAAAATGCCATTGTGGTATATGTAATTTTAAATATTTAAGATTTTAATTTCTATATTTTCAATTAATCTTAAATCTAGTTCATATTAGTTCATATTATTATTGCTCTTTGTTTATAGTTGATATTTTCAAAAACTTTTTTTAATCTATTTAGCACTCCCACCCTAAAGTTTGAAAATGTATTCACATTTTGTATTTTCTTTCATGAAAGTTATTTTTATTATTTAACAAATTTTAATAAAAATATACTTTGAGGGATTAAATTCATATGCATTGAAAGTATAGAGACTAATATTAGACTTTAAAACCTTCGTCGTTTTGGTAAGTTTTTAAAAGTCGACTTAAGATGTAGTTCATGATACACCTTAAAAGTCAAAAAGTCGAATTTAAGATAAAATTCTTTGGTCCACCTACGCATGGCACAACAATTAATTATCATCTCTACTTCCATCAAAAGTTCATAAGGTTAAAAGAAAAAACACTTTTGGTTTCTAGACTTTGAAAGTAATAATTTAGTTCCTAAACTTTGGTTGGTAACAATATAGTTCATGTACAATCAAATTTGAACAATTTAGTCCTTAAAATTTAATAAGGAATAATTTTGTCCACATACTTTACAATTTGGAAACGAGTTAATCTCTATCTTGATGTCTTTCATCAAAATTTTGTTTGTCTTTATTACCTATTGACTTGGTCTTATAATTTATAAATAAATTTGATTCTCAATCAGTTTCTCAATATAAATGTTATAAGATATTTCATTAAATCGTACTAATACTTTCATGATAAGGACTAAATTGTTACAAATTGTAAAGTATTGAGGCTAAATCTCATTCTTGATTAAATTTCAGGAATTAAAGTATAGAGACTAAATCTCATTACTGATTGAATTTTAGGAATTAAACTGCTACAAATTTGAGTTTAGGACCAAACATGTTTTTCTAGGGATAGTTGCAAATATAGCAATCAGGTTCAAAGGATTTGTTGATATAGCACAATGCAAAAAGATTTGCAAATATAACAAAATTTAGATTTTGCTTTCAAAGTCTATTAGTGATATATCATATTAATAGCGGGGTTTATCAGTGATAGACCATATCACTATAGAAGTCTATCAGTGATAGAGTCTATTGATAGATTTTGCTATATTTGCAATTTTTTAAAAATGTTGCTATACACTTAATTATAACCCCTAAAAGTGCTACCTAACACAATTACCTTTTTTAGGGATATTTTCAAATATAAAAAAAATGAGTCAAACTATTTATAAATATAGAAAAATTTCACTGTCCATCAGCGATAAACAACGATAAATTTCTATCAATTTAGATAGAAGTCTATCGTTGTCTATCCCTGATAGACAATGCAACTTTTCTATATTTTTAAATAGTTTAATATTTTATTTATTTATAATAATTTCCTTTTTTTAAACCAAAATTTAACTACTCAAGCATATTTTTGTTAATAATTATTAGATGATGTAATGTAATTAAGGAATAATTTAGAGAGTTTTAGAGTTTTGTAAAGTTAAAAATAGTTGAATAATTCCTTTAATACAAAACAGGCACACTCAACTCCCTCAATGATCAAGAAAAAGTAGAGCTTCTCCAATTCCACATGATCCCTACTTTCTTGTCTCTCTCAAATTTCCAAACAGTCAGCAATCCGGTGAGAACTCAGGCTGGCGATGCCTATGAGTTCCCTCTTAACGTCACCACCTCCGGCAACTCCGTCAACGTATCCTCCGGCCTCGTCAACACCTCCATCTCTGGCACCGTCTACTCCGACAACCAGCTTGCCATCTACCAGATCGACTCCGTCCTCAAGCCGATTGGCGTCTTTCAGCCTCGCCCTCCACCCCCGGCTCCCGCACCGGAGAAGTCCAAGAAGAAGGCCAAGGCCATTTCTGAGAGCCCCAAGGGCTCGGCCGATGACAACTCCTCCGCCGTGCCTCTTCCAAGGTTGTCAGTCTTCTCCGCCAGAGCTGCGGTAGTCGTCGCAATAATGTTGGTGTGGATAAATTCTTGA

mRNA sequence

ATGGTTAATAGCCTCTTCTCTCTCATGATATTGCTTATCTTCCTCTTCCTCTTCCTCGGTTGCAGCTATGGGCAGTCGCCGGCGGAAGCTCCGGGGCCTCCGCCGCCGATGAATATCACAAAAATATTGGAAAAGGGTGGCCAATTTAGTGTTCTTATAAGGCTTTTGAAGAGCACTCAAGTTGCCAACCAAATCAACACTCAGCTCAATGACTCCAATTCTGAACTCACCATTTTTGCCCCAACTGATAATGCCTTCTCCAACCTTCAATCTGGCACACTCAACTCCCTCAATGATCAAGAAAAAGTAGAGCTTCTCCAATTCCACATGATCCCTACTTTCTTGTCTCTCTCAAATTTCCAAACAGTCAGCAATCCGGTGAGAACTCAGGCTGGCGATGCCTATGAGTTCCCTCTTAACGTCACCACCTCCGGCAACTCCGTCAACGTATCCTCCGGCCTCGTCAACACCTCCATCTCTGGCACCGTCTACTCCGACAACCAGCTTGCCATCTACCAGATCGACTCCGTCCTCAAGCCGATTGGCGTCTTTCAGCCTCGCCCTCCACCCCCGGCTCCCGCACCGGAGAAGTCCAAGAAGAAGGCCAAGGCCATTTCTGAGAGCCCCAAGGGCTCGGCCGATGACAACTCCTCCGCCGTGCCTCTTCCAAGGTTGTCAGTCTTCTCCGCCAGAGCTGCGGTAGTCGTCGCAATAATGTTGGTGTGGATAAATTCTTGA

Coding sequence (CDS)

ATGGTTAATAGCCTCTTCTCTCTCATGATATTGCTTATCTTCCTCTTCCTCTTCCTCGGTTGCAGCTATGGGCAGTCGCCGGCGGAAGCTCCGGGGCCTCCGCCGCCGATGAATATCACAAAAATATTGGAAAAGGGTGGCCAATTTAGTGTTCTTATAAGGCTTTTGAAGAGCACTCAAGTTGCCAACCAAATCAACACTCAGCTCAATGACTCCAATTCTGAACTCACCATTTTTGCCCCAACTGATAATGCCTTCTCCAACCTTCAATCTGGCACACTCAACTCCCTCAATGATCAAGAAAAAGTAGAGCTTCTCCAATTCCACATGATCCCTACTTTCTTGTCTCTCTCAAATTTCCAAACAGTCAGCAATCCGGTGAGAACTCAGGCTGGCGATGCCTATGAGTTCCCTCTTAACGTCACCACCTCCGGCAACTCCGTCAACGTATCCTCCGGCCTCGTCAACACCTCCATCTCTGGCACCGTCTACTCCGACAACCAGCTTGCCATCTACCAGATCGACTCCGTCCTCAAGCCGATTGGCGTCTTTCAGCCTCGCCCTCCACCCCCGGCTCCCGCACCGGAGAAGTCCAAGAAGAAGGCCAAGGCCATTTCTGAGAGCCCCAAGGGCTCGGCCGATGACAACTCCTCCGCCGTGCCTCTTCCAAGGTTGTCAGTCTTCTCCGCCAGAGCTGCGGTAGTCGTCGCAATAATGTTGGTGTGGATAAATTCTTGA

Protein sequence

MVNSLFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIMLVWINS
Homology
[Close]
BLAST of Cla005042 vs. Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 5.8e-68
Identity = 137/245 (55.92%), Postives = 179/245 (73.06%), Query Frame = 1 

Query: 7   SLMILLIFLFLFLGCSYG----QSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVA 66
           SL+ILL  + L L  + G     SPA AP PP P N+TKILEK GQF+V IRLLKST VA
Sbjct: 4   SLIILLFTVLLLLTTTPGILSQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGVA 63

Query: 67  NQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQT 126
           NQ+  QLN+S++ +TIFAP+D++F+ L++GTLNSL D+++VEL+QFH+IP+++S SNFQT
Sbjct: 64  NQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQT 123

Query: 127 VSNPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKP 186
           +SNP+RTQAGD+ +  FPLNVTTSGN+VN++SG+ NT++SG VYSD QLA+YQ+D VL P
Sbjct: 124 ISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLP 183

Query: 187 IGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAV---VVA 243
             VF PRPP PAPAP  SK K K   +    S+DD+ +       +V S   AV   V++
Sbjct: 184 QQVFDPRPPAPAPAPSVSKSKKK--KDDSDSSSDDSPADASFALRNVGSVCDAVSFCVMS 243

[Close]
BLAST of Cla005042 vs. Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-59
Identity = 120/213 (56.34%), Postives = 158/213 (74.18%), Query Frame = 1 

Query: 12  LIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQINTQLND 71
           L   FL +  +YGQ+PA  PGP  P NIT ILEK GQF++ IRLLKSTQ ++QINTQLN 
Sbjct: 12  LFIFFLVIATTYGQAPA--PGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNS 71

Query: 72  SNSE-LTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVSNPVRTQ 131
           S+S  LT+FAPTDNAF++L+SGTLNSL+DQ+KV+L+QFH++PT +++  FQTVSNP+RTQ
Sbjct: 72  SSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQ 131

Query: 132 AGDAY--EFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIGVFQPRP 191
           AGD    +FPLN+T+SGN VN+++G+V+ +++ +VYSD QLA+YQ+D VL P+ +F    
Sbjct: 132 AGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF-GSS 191

Query: 192 PPPAPAPEK--SKKKAKAISESPKGSADDNSSA 220
             PAPAPEK  S  K  A      G + D+S A
Sbjct: 192 VAPAPAPEKGGSVSKGSASGGDDGGDSTDSSDA 221

[Close]
BLAST of Cla005042 vs. Swiss-Prot
Match: FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.4e-44
Identity = 102/229 (44.54%), Postives = 141/229 (61.57%), Query Frame = 1 

Query: 9   MILLIFLFLFLGCSY-GQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQINT 68
           ++LL+   +FL      Q  A APGP  P+NIT ILEKGGQF  LIRLL +TQ+ NQIN 
Sbjct: 6   LLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQINI 65

Query: 69  QLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVSNPV 128
           Q+N S+  +T+ APTDNAF NL+ GTLN L+  ++V+L+ +H+ P F +L +  +VSNPV
Sbjct: 66  QINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPV 125

Query: 129 RTQAGD---AYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIGVF 188
           RTQA        + LN T  GN VNVS+G+V T +S ++  +  LA+Y +D VL P  +F
Sbjct: 126 RTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185

Query: 189 QPR------PPPPAPAPE-----KSKKKAKAISESPKGSADDNSSAVPL 223
             R      PPP + +P+     +S KKA A SES K  + + ++ + L
Sbjct: 186 GERKISPMAPPPKSKSPDVSDDSESSKKAAAPSESEKSGSGEMNTGLGL 234

[Close]
BLAST of Cla005042 vs. Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 9.4e-42
Identity = 106/235 (45.11%), Postives = 142/235 (60.43%), Query Frame = 1 

Query: 1   MVNSLFSLMILLIFLFLFLGCSYGQSPAEAPGPPP---PMNITKILEKGGQFSVLIRLLK 60
           M +SLFS ++LLIFLF      Y QS   AP P     P+N+T ILE G QF+ LI+LL 
Sbjct: 1   MSSSLFSYVVLLIFLFTI---PYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLN 60

Query: 61  STQVANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSL 120
           +TQV  Q++ QLN S+  +TIFAPTDNAF+ L+ GTLNSL  Q++++L+ +H+IP + SL
Sbjct: 61  TTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSL 120

Query: 121 SNFQTVSNPVRTQA--GDAYEFPLNVT--TSGNSVNVSSGLVNTSISGTVYSDNQLAIYQ 180
           S+    SNPVRTQA   D   F LN T     N VNVS+G+V T I+  +     LA+Y 
Sbjct: 121 SDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYV 180

Query: 181 IDSVLKPIGVFQPRPPPP-APAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSV 228
           +DSVL P  +F  +  P  APAP+ S   + A  +SP    +  S+   + R S+
Sbjct: 181 VDSVLLPEELFGTKTTPTGAPAPKSSTSSSDA--DSPAADDEHKSAGSSVKRTSL 230

[Close]
BLAST of Cla005042 vs. Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-38
Identity = 91/213 (42.72%), Postives = 126/213 (59.15%), Query Frame = 1 

Query: 10  ILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQINTQL 69
           +LLI   L    +  Q  A AP P  P+N+T ILEKGGQF+  I LL  TQV +Q+N Q+
Sbjct: 11  LLLIAAVLLATKATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQV 70

Query: 70  NDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVSNPVRT 129
           N S+  +T+FAPTDNAF NL+ GTLN L+  ++V+L+ +H+ P + S+ +  +VSNPVRT
Sbjct: 71  NSSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRT 130

Query: 130 QAG--DAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIGVF-QP 189
           QA   D   + LN T   N +NVS+G V T IS ++     LA+Y +D VL P  +F + 
Sbjct: 131 QASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMFGEH 190

Query: 190 RPPPPAPAPEKSKKKAKAISESPKGSADDNSSA 220
           +  P APAP+         S S K +A  +  +
Sbjct: 191 KLSPIAPAPKSKSGGVTDDSGSTKKAASPSDKS 223

[Close]
BLAST of Cla005042 vs. TrEMBL
Match: A0A0A0LVA0_CUCSA (Arabinogalactan protein 2 OS=Cucumis sativus GN=Csa_1G085380 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.9e-118
Identity = 223/245 (91.02%), Postives = 230/245 (93.88%), Query Frame = 1 

Query: 1   MVNSLFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQ 60
           M NSLFSL+ILLIF FL   CSYGQSPAEAPGPPPPMNITKILEKGGQF+VLIRLLK+TQ
Sbjct: 1   MANSLFSLVILLIFFFL--DCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQ 60

Query: 61  VANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120
           VANQINTQLNDSNSELT+FAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF
Sbjct: 61  VANQINTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120

Query: 121 QTVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKP 180
           QT+SNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVY+DNQLAIYQIDSVLKP
Sbjct: 121 QTISNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKP 180

Query: 181 IGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 240
           IGVFQPRPPPPAPAPEKSKKKAK  SESPK S DDNSSAVPL  +SV S  AAVVV IML
Sbjct: 181 IGVFQPRPPPPAPAPEKSKKKAKGNSESPKDSDDDNSSAVPLAGVSVISTGAAVVVGIML 240

Query: 241 VWINS 246
           VWINS
Sbjct: 241 VWINS 243

[Close]
BLAST of Cla005042 vs. TrEMBL
Match: A9XTK6_GOSHI (Arabinogalactan protein 2 OS=Gossypium hirsutum GN=FLA1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-74
Identity = 143/239 (59.83%), Postives = 188/239 (78.66%), Query Frame = 1 

Query: 5   LFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQ 64
           +F+ + LLI   L    +  QSPA AP P  P N+TKILEK GQF++ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQSPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 65  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVS 124
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL D++KV+L+QFH++PT+L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVQLVQFHIVPTYLTSSQFQTIS 125

Query: 125 NPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIG 184
           NP+RTQAGD+ +  FPLNVTTSGNSVN+++GL NTS+SGT+Y+D QLA+YQID VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQ 185

Query: 185 VFQPRPPPPAPAPEKSK-KKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 241
           +F PRPP PAPAP KSK KKA  +++SP  +  DNS A  L  + +F   AA+V+A+ L
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGV-AALVIALSL 243

[Close]
BLAST of Cla005042 vs. TrEMBL
Match: Q7Y250_GOSHI (Arabinogalactan protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 142/239 (59.41%), Postives = 188/239 (78.66%), Query Frame = 1 

Query: 5   LFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQ 64
           +F+ + LLI   L    +  Q+PA AP P  P N+TKILEK GQF++ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQAPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 65  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVS 124
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL D++KVEL+QFH++PT+L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVELVQFHIVPTYLTSSQFQTIS 125

Query: 125 NPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIG 184
           NP+RTQAGD+ +  FPLN+TTSGNSVN+++GL NTS+SGT+Y+D QLA+YQID VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNITTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQ 185

Query: 185 VFQPRPPPPAPAPEKSK-KKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 241
           +F PRPP PAPAP KSK KKA  +++SP  +  DNS A  L  + +F   AA+V+A+ L
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGV-AALVIALSL 243

[Close]
BLAST of Cla005042 vs. TrEMBL
Match: A0A0D2NQU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G119900 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-73
Identity = 142/239 (59.41%), Postives = 188/239 (78.66%), Query Frame = 1 

Query: 5   LFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQ 64
           +F+ + LLI   L    +  Q+PA AP P  P N+TKILEK GQF++ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQAPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 65  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVS 124
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL D++KV+L+QFH++PT+L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVQLVQFHIVPTYLTSSQFQTIS 125

Query: 125 NPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIG 184
           NP+RTQAGD+ +  FPLNVTTSGNSVN+++GL NTS+SGT+Y+D QLA+YQID VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDKVLQPLQ 185

Query: 185 VFQPRPPPPAPAPEKSK-KKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 241
           +F PRPP PAPAP KSK KKA  +++SP  +  DNS A  L  + +F   AA+V+A+ L
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGV-AALVIALSL 243

[Close]
BLAST of Cla005042 vs. TrEMBL
Match: A0A061GV39_THECC (FASCICLIN-like arabinogalactan-protein 11 OS=Theobroma cacao GN=TCM_041052 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-71
Identity = 144/243 (59.26%), Postives = 187/243 (76.95%), Query Frame = 1 

Query: 8   LMILLIFLFLFLGCSY------GQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQV 67
           L IL   L  FL C          +PA AP PP P N+TKILEK GQF++ IRLLK+T V
Sbjct: 8   LFILSFLLLSFLRCPQTLAQAPALAPALAPAPPGPTNVTKILEKAGQFTLFIRLLKATAV 67

Query: 68  ANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQ 127
           ANQ+  QLN++N+ +TIFAPTDNAFS+L+SGTLNSL+D++KVEL+QFH+IPT+LS + FQ
Sbjct: 68  ANQLLGQLNNTNNGMTIFAPTDNAFSSLKSGTLNSLSDEQKVELVQFHIIPTYLSSTQFQ 127

Query: 128 TVSNPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLK 187
           T+SNP+RTQAGD+ +  FPLNVTTSGNSVN+++GL NTS+SGT+Y+D QLA+YQ+D VL+
Sbjct: 128 TISNPLRTQAGDSADGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQVDKVLQ 187

Query: 188 PIGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLS--VFSARAAVVVA 241
           P+ +F PRPP PAPAP KSKKKA A+++SP  +  DNS AV    +   VF   +A+V+A
Sbjct: 188 PLQIFDPRPPAPAPAPAKSKKKA-AVADSPDDTPADNSKAVSTLTMQNVVFWGVSAIVLA 247

[Close]
BLAST of Cla005042 vs. NCBI nr
Match: gi|659072184|ref|XP_008463798.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis melo])

HSP 1 Score: 435.3 bits (1118), Expect = 7.3e-119
Identity = 223/245 (91.02%), Postives = 231/245 (94.29%), Query Frame = 1 

Query: 1   MVNSLFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQ 60
           M NSLFSL+ILLIF F+   CSYGQSPAEAPGPPPPMNI+KILEKGGQF+VLIRLLKSTQ
Sbjct: 1   MGNSLFSLVILLIFFFI--DCSYGQSPAEAPGPPPPMNISKILEKGGQFNVLIRLLKSTQ 60

Query: 61  VANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120
           VANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF
Sbjct: 61  VANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120

Query: 121 QTVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKP 180
           QT+SNPVRTQAGDAYEFPLNVTTSGNSVN+SSGLVNTSISGTVY+DNQLAIYQIDSVLKP
Sbjct: 121 QTISNPVRTQAGDAYEFPLNVTTSGNSVNISSGLVNTSISGTVYTDNQLAIYQIDSVLKP 180

Query: 181 IGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 240
           IGVFQPRPPPPAPAPEKSKKKAK ISESPK S DDNSSAVPL  +S FS  AAVVV IML
Sbjct: 181 IGVFQPRPPPPAPAPEKSKKKAKGISESPKDSDDDNSSAVPLAGISSFSTEAAVVVGIML 240

Query: 241 VWINS 246
           VWINS
Sbjct: 241 VWINS 243

[Close]
BLAST of Cla005042 vs. NCBI nr
Match: gi|449462077|ref|XP_004148768.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis sativus])

HSP 1 Score: 433.3 bits (1113), Expect = 2.8e-118
Identity = 223/245 (91.02%), Postives = 230/245 (93.88%), Query Frame = 1 

Query: 1   MVNSLFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQ 60
           M NSLFSL+ILLIF FL   CSYGQSPAEAPGPPPPMNITKILEKGGQF+VLIRLLK+TQ
Sbjct: 1   MANSLFSLVILLIFFFL--DCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQ 60

Query: 61  VANQINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120
           VANQINTQLNDSNSELT+FAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF
Sbjct: 61  VANQINTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNF 120

Query: 121 QTVSNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKP 180
           QT+SNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVY+DNQLAIYQIDSVLKP
Sbjct: 121 QTISNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKP 180

Query: 181 IGVFQPRPPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 240
           IGVFQPRPPPPAPAPEKSKKKAK  SESPK S DDNSSAVPL  +SV S  AAVVV IML
Sbjct: 181 IGVFQPRPPPPAPAPEKSKKKAKGNSESPKDSDDDNSSAVPLAGVSVISTGAAVVVGIML 240

Query: 241 VWINS 246
           VWINS
Sbjct: 241 VWINS 243

[Close]
BLAST of Cla005042 vs. NCBI nr
Match: gi|1009115649|ref|XP_015874343.1| (PREDICTED: fasciclin-like arabinogalactan protein 12 [Ziziphus jujuba])

HSP 1 Score: 295.8 bits (756), Expect = 6.9e-77
Identity = 149/236 (63.14%), Postives = 193/236 (81.78%), Query Frame = 1 

Query: 6   FSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQI 65
           F+L +LL+FLF     S GQ+PA +PGP  P++I KIL K GQF++LIRLL+STQV NQI
Sbjct: 6   FTLSLLLLFLFHCTTIS-GQAPAASPGPAAPLDIYKILTKAGQFTILIRLLRSTQVGNQI 65

Query: 66  NTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVSN 125
           N+QL DSNSELT FAPTDNAFS+L++GTLNSL+DQ+KV L+QFH+IP+F+S+SNFQT+SN
Sbjct: 66  NSQLGDSNSELTFFAPTDNAFSSLKTGTLNSLSDQQKVMLVQFHLIPSFISISNFQTMSN 125

Query: 126 PVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIGVFQ 185
           PV+TQA + YEFPLN+TTSG+ VN+++GLVNTSISGTVYSDNQLA+YQ++ VL+P+G+F 
Sbjct: 126 PVQTQASNTYEFPLNITTSGSQVNITTGLVNTSISGTVYSDNQLAVYQVEKVLQPLGIFA 185

Query: 186 PR--PPPPAPAPEKSKKKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIM 240
           PR  PP PAPAP KSKKK+   S+SP  S  D S AV + R  + S   ++VV+++
Sbjct: 186 PRSLPPAPAPAPPKSKKKSATSSDSPVASV-DASGAVGVTRNVLVSVGVSIVVSVL 239

[Close]
BLAST of Cla005042 vs. NCBI nr
Match: gi|150416579|gb|ABR68797.1| (arabinogalactan protein 2 [Gossypium hirsutum])

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-73
Identity = 143/239 (59.83%), Postives = 188/239 (78.66%), Query Frame = 1 

Query: 5   LFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQ 64
           +F+ + LLI   L    +  QSPA AP P  P N+TKILEK GQF++ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQSPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 65  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVS 124
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL D++KV+L+QFH++PT+L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVQLVQFHIVPTYLTSSQFQTIS 125

Query: 125 NPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIG 184
           NP+RTQAGD+ +  FPLNVTTSGNSVN+++GL NTS+SGT+Y+D QLA+YQID VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQ 185

Query: 185 VFQPRPPPPAPAPEKSK-KKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 241
           +F PRPP PAPAP KSK KKA  +++SP  +  DNS A  L  + +F   AA+V+A+ L
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGV-AALVIALSL 243

[Close]
BLAST of Cla005042 vs. NCBI nr
Match: gi|30841338|gb|AAO92753.1| (arabinogalactan protein [Gossypium hirsutum])

HSP 1 Score: 284.6 bits (727), Expect = 1.6e-73
Identity = 142/239 (59.41%), Postives = 188/239 (78.66%), Query Frame = 1 

Query: 5   LFSLMILLIFLFLFLGCSYGQSPAEAPGPPPPMNITKILEKGGQFSVLIRLLKSTQVANQ 64
           +F+ + LLI   L    +  Q+PA AP P  P N+TKILEK GQF++ IRLLKSTQVANQ
Sbjct: 6   VFTTLTLLILFSLSCSTTLAQAPALAPAPSGPTNVTKILEKAGQFTLFIRLLKSTQVANQ 65

Query: 65  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTVS 124
           +  QLN+SN+ +T+FAPTDNAFS+L+SGTLNSL D++KVEL+QFH++PT+L+ S FQT+S
Sbjct: 66  LLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVELVQFHIVPTYLTSSQFQTIS 125

Query: 125 NPVRTQAGDAYE--FPLNVTTSGNSVNVSSGLVNTSISGTVYSDNQLAIYQIDSVLKPIG 184
           NP+RTQAGD+ +  FPLN+TTSGNSVN+++GL NTS+SGT+Y+D QLA+YQID VL+P+ 
Sbjct: 126 NPLRTQAGDSGDGKFPLNITTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQ 185

Query: 185 VFQPRPPPPAPAPEKSK-KKAKAISESPKGSADDNSSAVPLPRLSVFSARAAVVVAIML 241
           +F PRPP PAPAP KSK KKA  +++SP  +  DNS A  L  + +F   AA+V+A+ L
Sbjct: 186 IFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGV-AALVIALSL 243

The following BLAST results are available for this feature:
BLAST of Cla005042 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FLA12_ARATH5.8e-6855.92Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 ... [more]
FLA11_ARATH1.0e-5956.34Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 ... [more]
FLA13_ARATH3.4e-4444.54Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 ... [more]
FLA6_ARATH9.4e-4245.11Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV... [more]
FLA9_ARATH1.7e-3842.72Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV... [more]
BLAST of Cla005042 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVA0_CUCSA1.9e-11891.02Arabinogalactan protein 2 OS=Cucumis sativus GN=Csa_1G085380 PE=4 SV=1[more]
A9XTK6_GOSHI8.4e-7459.83Arabinogalactan protein 2 OS=Gossypium hirsutum GN=FLA1 PE=2 SV=1[more]
Q7Y250_GOSHI1.1e-7359.41Arabinogalactan protein OS=Gossypium hirsutum PE=2 SV=1[more]
A0A0D2NQU4_GOSRA1.9e-7359.41Uncharacterized protein OS=Gossypium raimondii GN=B456_006G119900 PE=4 SV=1[more]
A0A061GV39_THECC1.0e-7159.26FASCICLIN-like arabinogalactan-protein 11 OS=Theobroma cacao GN=TCM_041052 PE=4 ... [more]
BLAST of Cla005042 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072184|ref|XP_008463798.1|7.3e-11991.02PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis melo][more]
gi|449462077|ref|XP_004148768.1|2.8e-11891.02PREDICTED: fasciclin-like arabinogalactan protein 12 [Cucumis sativus][more]
gi|1009115649|ref|XP_015874343.1|6.9e-7763.14PREDICTED: fasciclin-like arabinogalactan protein 12 [Ziziphus jujuba][more]
gi|150416579|gb|ABR68797.1|1.2e-7359.83arabinogalactan protein 2 [Gossypium hirsutum][more]
gi|30841338|gb|AAO92753.1|1.6e-7359.41arabinogalactan protein [Gossypium hirsutum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009733 response to auxin
biological_process GO:0009735 response to cytokinin
biological_process GO:0009739 response to gibberellin
biological_process GO:0009651 response to salt stress
biological_process GO:0090376 seed trichome differentiation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU29049watermelon EST collection version 2.0transcribed_cluster
WMU45054watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005042Cla005042.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU45054WMU45054transcribed_cluster
WMU29049WMU29049transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainGENE3DG3DSA:2.30.180.10coord: 37..180
score: 2.1
IPR000782FAS1 domainPFAMPF02469Fasciclincoord: 48..180
score: 1.7
IPR000782FAS1 domainSMARTSM00554fasc_3coord: 77..181
score: 1.3
IPR000782FAS1 domainPROFILEPS50213FAS1coord: 36..178
score: 21
IPR000782FAS1 domainunknownSSF82153FAS1 domaincoord: 30..180
score: 2.22
NoneNo IPR availablePANTHERPTHR32077FAMILY NOT NAMEDcoord: 1..243
score: 3.5E
NoneNo IPR availablePANTHERPTHR32077:SF10FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12coord: 1..243
score: 3.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla005042Cla97C03G053260Watermelon (97103) v2wmwmbB124
Cla005042Csa1G085380Cucumber (Chinese Long) v2cuwmB010
Cla005042MELO3C005051Melon (DHL92) v3.5.1mewmB146
Cla005042ClCG03G002250Watermelon (Charleston Gray)wcgwmB223
Cla005042CSPI01G12740Wild cucumber (PI 183967)cpiwmB012
Cla005042Cucsa.207270Cucumber (Gy14) v1cgywmB407
Cla005042CmaCh13G001840Cucurbita maxima (Rimu)cmawmB185
Cla005042CmaCh01G005390Cucurbita maxima (Rimu)cmawmB429
Cla005042CmoCh13G001870Cucurbita moschata (Rifu)cmowmB173
Cla005042CmoCh01G005690Cucurbita moschata (Rifu)cmowmB422
Cla005042Cp4.1LG20g08990Cucurbita pepo (Zucchini)cpewmB507
Cla005042Cp4.1LG02g12840Cucurbita pepo (Zucchini)cpewmB548
Cla005042CsGy1G012780Cucumber (Gy14) v2cgybwmB012
Cla005042MELO3C005051.2Melon (DHL92) v3.6.1medwmB143
Cla005042Carg12314Silver-seed gourdcarwmB0440
Cla005042Carg21061Silver-seed gourdcarwmB0725
Cla005042CsaV3_1G012930Cucumber (Chinese Long) v3cucwmB015
Cla005042Bhi08G000270Wax gourdwgowmB477
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla005042Watermelon (97103) v2wmwmbB118
Cla005042Watermelon (97103) v2wmwmbB123
Cla005042Wax gourdwgowmB366
Cla005042Watermelon (97103) v1wmwmB086
Cla005042Watermelon (97103) v1wmwmB092
Cla005042Cucurbita maxima (Rimu)cmawmB556
Cla005042Cucurbita moschata (Rifu)cmowmB549
Cla005042Melon (DHL92) v3.5.1mewmB095
Cla005042Watermelon (Charleston Gray)wcgwmB184
Cla005042Cucumber (Chinese Long) v2cuwmB481
Cla005042Bottle gourd (USVL1VR-Ls)lsiwmB052
Cla005042Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla005042Melon (DHL92) v3.6.1medwmB092
Cla005042Cucumber (Chinese Long) v3cucwmB507