CmaCh01G003810 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription factor
Location	Cma_Chr01 : 1909530 .. 1911073 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCAATCATGATAGAGTTTAGACAAGACCTGCATCACTTCAAGTCCTCCAAAGCATCTGAAGAAAGGGGTTTGAATATGGAAGTCATAAACCAGTTCCCAAATATGACAGAGAGCATGCTAGAGGATTTCAATGAAACAGACTTCTCAGAAGAAAACTTCTTGGGCTACCATTTCCAGTTACCAGAAAACACAACACGGAGCTCAATTTCTGATTTTCCTCGTCTTGCCCTGTGGAAATGTCAGAATGAGTTTCCGGTGATAACTCGAAGCAGTCCACTGGTAGATATCTCTCAACAAACCATGAACAGAAAATCAAAACAAGTATTGGTAAGCTTCTCAGGAACCCCTTGTGCAGCTTTTGGCAATAACTGTAGTGTTGCTAGGAATTTGAAGGCAAGTGTCAATTCTTCATCAAATTCTGTCTTTGAGTATTTGATGTGTGTTCTTATTGGTTTCTTTGTTTACTCAGACCTTAGGAGGAAGGAAAAGAAGGAAATGTGAGAAAGAACAAGAAAAGCATGCAGAAGTAGTTCATATTAGAGCAAAAAGAGGTGAAGCTACCCATAGTCACAGCTTAGCAGAAAGGGTATATTACTGATTTATACTATCCATCTTCCTCATACAAGTCGTTTTACGGATTGATATTTCAGGTGAAATGAAAAGTCCAATACTGAAACCATTTTTCATATTTCAGGTGAGAAGGGAGAAAATCAACAACAAATTAAAATGCTTACAAAGCCTTGTTCCAGGTTGCCACAAGGTAATTTCTTTTCCTGGTCCTGTTTACCAAAACATTGAAGTCTCAAGTTCAAATCAAACTTCCATGTTATTCTGCAGACAATGGGTATGACAATGGTGTTGGATGAGACAATCACTTATGTTCATTCACTACAGAATCAGGTTGAGGTGAGGAATATGGTGCACTTTTCATAAGTATTTGTAATGTTTTCATCAAATAGCACTGATCTATTCACTTTGTTCCTGAATTCAGTTTCTCTCAATGGAGCTTGCAACTGCCTGTTCCACTTTAGGCATAAATTCTGGCATGGGAGCTACCAGAACAGCTTCGGTAATCCAACAACTTCCTGAAAGAGTATTAACTTTTGACATTTTACTTTCTAAATTAAAAATAAAACATAAATTTACTGCAAGTATGGAATTGATATTGATGCATCCTATATTAATTAGTGTTGAAATATTGACGTTTAAGCTTAAAGCATAATATTGCAGGGGACAAGATCACATGAGGAACAGGAGGAAGAGAAATAAATAAGCAAATGATAAAGAGAGCACAGTTGGTTCCACTAGAGTAAGCCCTTTTGACTGTGGGGCATTTGTTATCTATTCTCATGAATCTGCTTCCTATATTCACTTTCTTTCTAGGCAAACATGATTGGTTTCTCATAAGTCCACAAAATGCTGTAAGCAAAACTACCAGACAGTGATGTATCAATTCTACATCTGCTGCAAATTGCAATCAAATACCTAATACTGTCTATAACAGTTTCTTTGTGGGATTTTGTTATCTTGTCTGTAAATCAT

mRNA sequence

ACTCAATCATGATAGAGTTTAGACAAGACCTGCATCACTTCAAGTCCTCCAAAGCATCTGAAGAAAGGGGTTTGAATATGGAAGTCATAAACCAGTTCCCAAATATGACAGAGAGCATGCTAGAGGATTTCAATGAAACAGACTTCTCAGAAGAAAACTTCTTGGGCTACCATTTCCAGTTACCAGAAAACACAACACGGAGCTCAATTTCTGATTTTCCTCGTCTTGCCCTGTGGAAATGTCAGAATGAGTTTCCGGTGATAACTCGAAGCAGTCCACTGGTAGATATCTCTCAACAAACCATGAACAGAAAATCAAAACAAGTATTGACCTTAGGAGGAAGGAAAAGAAGGAAATGTGAGAAAGAACAAGAAAAGCATGCAGAAGTAGTTCATATTAGAGCAAAAAGAGGTGAAGCTACCCATAGTCACAGCTTAGCAGAAAGGGTGAGAAGGGAGAAAATCAACAACAAATTAAAATGCTTACAAAGCCTTGTTCCAGGTTGCCACAAGACAATGGGTATGACAATGGTGTTGGATGAGACAATCACTTATGTTCATTCACTACAGAATCAGGTTGAGTTTCTCTCAATGGAGCTTGCAACTGCCTGTTCCACTTTAGGCATAAATTCTGGCATGGGAGCTACCAGAACAGCTTCGGGGACAAGATCACATGAGGAACAGGAGGAAGAGAAATAAATAAGCAAATGATAAAGAGAGCACAGTTGGTTCCACTAGAGTAAGCCCTTTTGACTGTGGGGCATTTGTTATCTATTCTCATGAATCTGCTTCCTATATTCACTTTCTTTCTAGGCAAACATGATTGGTTTCTCATAAGTCCACAAAATGCTGTAAGCAAAACTACCAGACAGTGATGTATCAATTCTACATCTGCTGCAAATTGCAATCAAATACCTAATACTGTCTATAACAGTTTCTTTGTGGGATTTTGTTATCTTGTCTGTAAATCAT

Coding sequence (CDS)

ATGATAGAGTTTAGACAAGACCTGCATCACTTCAAGTCCTCCAAAGCATCTGAAGAAAGGGGTTTGAATATGGAAGTCATAAACCAGTTCCCAAATATGACAGAGAGCATGCTAGAGGATTTCAATGAAACAGACTTCTCAGAAGAAAACTTCTTGGGCTACCATTTCCAGTTACCAGAAAACACAACACGGAGCTCAATTTCTGATTTTCCTCGTCTTGCCCTGTGGAAATGTCAGAATGAGTTTCCGGTGATAACTCGAAGCAGTCCACTGGTAGATATCTCTCAACAAACCATGAACAGAAAATCAAAACAAGTATTGACCTTAGGAGGAAGGAAAAGAAGGAAATGTGAGAAAGAACAAGAAAAGCATGCAGAAGTAGTTCATATTAGAGCAAAAAGAGGTGAAGCTACCCATAGTCACAGCTTAGCAGAAAGGGTGAGAAGGGAGAAAATCAACAACAAATTAAAATGCTTACAAAGCCTTGTTCCAGGTTGCCACAAGACAATGGGTATGACAATGGTGTTGGATGAGACAATCACTTATGTTCATTCACTACAGAATCAGGTTGAGTTTCTCTCAATGGAGCTTGCAACTGCCTGTTCCACTTTAGGCATAAATTCTGGCATGGGAGCTACCAGAACAGCTTCGGGGACAAGATCACATGAGGAACAGGAGGAAGAGAAATAA

Protein sequence

MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPENTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQEEEK

Homology

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BLAST of CmaCh01G003810 vs. Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-28
Identity = 94/238 (39.50%), Postives = 127/238 (53.36%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVI-NQFPNMT--ESMLEDFNETDFSEENFLGYHFQ 60
           + E    LHHF++        L+     NQFP+    +S+  +F++  F   N       
Sbjct: 20  LAELSNTLHHFQTFPPPFSSSLDSLFFHNQFPDHFPGKSLENNFHQGIFFPSNI------ 79

Query: 61  LPENTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTLGG------ 120
             +N   SS S F      K ++    ++ S     +S QT++  S QV   G       
Sbjct: 80  --QNNEESS-SQFDTK---KRKSLMEAVSTSEN--SVSDQTLSTSSAQVSINGNISTKNN 139

Query: 121 ---RKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHK 180
              R +R   +E+EK  EVVH+RA+RG+AT SHS+AERVRR KIN +LKCLQ +VPGC+K
Sbjct: 140 SSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYK 199

Query: 181 TMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQE 227
           TMGM  +LDE I YV SLQNQVEFLSM+L  A S    NS   A  +    ++ E  E
Sbjct: 200 TMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVE 243

[Close]

BLAST of CmaCh01G003810 vs. Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-27
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 107 LTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGC 166
           L  G R ++K E+E EK  EVVH+RA+RG+AT SHSLAERVRR KIN +L+CLQ +VPGC
Sbjct: 122 LRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGC 181

Query: 167 HKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQE 226
           +K MGM  +LDE I YV SLQNQVEFLSM+L  A S    NS   A  +    ++ E  E
Sbjct: 182 YKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVE 241

[Close]

BLAST of CmaCh01G003810 vs. Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-25
Identity = 69/129 (53.49%), Postives = 87/129 (67.44%), Query Frame = 1


Query: 110 GGRKRRKCEKEQE--------KHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQS 169
           G ++RRK  +E+E        K  +VVH+RAKRG+AT SHSLAERVRREKIN +LKCLQ 
Sbjct: 76  GSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQD 135

Query: 170 LVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINS-GMGATRTASGTR 229
           LVPGC+K MGM ++LD  I YV SLQNQ+EFLSM+L+ A +   +NS  +  T    G  
Sbjct: 136 LVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGN 195

[Close]

BLAST of CmaCh01G003810 vs. Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.2e-20
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 93  DISQQTMNRKSKQVLTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKI 152
           D S++T+N++S Q              E+      +H+RA+RG+AT+SHSLAERVRREKI
Sbjct: 182 DQSKETVNKESSQ-------------SEEAPKENYIHMRARRGQATNSHSLAERVRREKI 241

Query: 153 NNKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGIN 208
           + +++ LQ LVPGC+K  G  ++LDE I YV SLQ QVEFLSM+LAT    + I+
Sbjct: 242 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINID 283

[Close]

BLAST of CmaCh01G003810 vs. Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-20
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 103 SKQVLTLGGRKRRKCEKEQEK---------HAEVVHIRAKRGEATHSHSLAERVRREKIN 162
           SK++        ++C+K +E          + + +H+RA+RG+AT SHSLAERVRREKI+
Sbjct: 222 SKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKIS 281

Query: 163 NKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGIN 208
            ++K LQ LVPGC+K  G  ++LDE I YV SLQ QVEFLSM+L++  + L  N
Sbjct: 282 ERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFN 335

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BLAST of CmaCh01G003810 vs. TrEMBL
Match: A0A0A0LCH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282490 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71
Identity = 153/225 (68.00%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 23  NMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPENTTRSSISDFPRLALWKCQNEF 82
           NMEVINQF N  ES LEDFNET+ S ENF GYHFQLPENT+ SS+S+F  +AL KCQ EF
Sbjct: 4   NMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPENTSPSSLSNFSSVALLKCQKEF 63

Query: 83  PVITRSSPLVDISQQTMNRKSKQVLTL-----------------------GGRKRRKCEK 142
           PVITRSS  VD   +TM RK KQV                          GGRKRR  EK
Sbjct: 64  PVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGNDSSNARSSKNMEGGRKRRNYEK 123

Query: 143 EQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHKTMGMTMVLDET 202
           EQEK  EVVH+RAKRG+AT SHSLAERVRREKIN+KLKCLQ+++PGCHK+MGM MVLDET
Sbjct: 124 EQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLKCLQNIIPGCHKSMGMAMVLDET 183

Query: 203 ITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEE 225
           I YV+SLQNQVEFLSMELA ACSTLGIN GMG  R A GTRSHEE
Sbjct: 184 INYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKALGTRSHEE 228

[Close]

BLAST of CmaCh01G003810 vs. TrEMBL
Match: U5GG63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 106/249 (42.57%), Postives = 145/249 (58.23%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKA-SEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLP 60
           M EF +    F+ S+  +E   +NME++   P M  S+LE F+ TDFS ++ L    Q P
Sbjct: 1   MAEFAEYQQRFRPSQPLTEMMDMNMEMLKHLPEMNPSILESFSITDFSADSLLAR--QQP 60

Query: 61  ENTT---RSSISDFPRLALWKCQNEFPVIT---------------RSSPLVDISQQTMNR 120
           E T     +++S      +         +T                 S    IS      
Sbjct: 61  EFTATYDHNNLSSTFHPDILSTATVVHTVTLNQNDSHDSKKRKSMEQSTSSYISPTASTN 120

Query: 121 KSKQVLTLGGRKR-RKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQ 180
           ++K+   LGG K+    EKE +K  EV+H+RAKRG+AT SHS+AERVRREKINNKL+CLQ
Sbjct: 121 ETKKKNNLGGSKKGENKEKEGDKAEEVIHVRAKRGQATDSHSIAERVRREKINNKLRCLQ 180

Query: 181 SLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTR 230
            LVPGCH++MGM ++L+E I YVHSLQNQVEFLSMELA A S+  +N+   +++ A GT 
Sbjct: 181 DLVPGCHRSMGMAVMLEEIINYVHSLQNQVEFLSMELAAASSSNDLNNLTESSKRAQGTD 240

[Close]

BLAST of CmaCh01G003810 vs. TrEMBL
Match: A0A061EIH6_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_019445 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 101/239 (42.26%), Postives = 134/239 (56.07%), Query Frame = 1


Query: 19  ERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGY----------HFQLPENTTRSSIS 78
           E  ++ME+  Q   +  ++LE+F+  DFS E  L +          H  L       S++
Sbjct: 3   EMDISMEMTKQSSELNSTLLENFSIADFSLETLLAHQLPEYSASCTHDNLSTTVLAGSLT 62

Query: 79  DFP-----------------RLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTLG- 138
             P                 R A+ +  + +  I+ +    +I   T  RK  +   LG 
Sbjct: 63  AIPTARTVTVDEDVFIESKKRKAMEQSTSNYQSISPAVSTTEIGGNTSTRKRNR---LGK 122

Query: 139 GRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHKTM 198
           G+K +  EK+ EK  EV+H+RA+RG+AT SHSLAERVRREKIN K++CLQ LVPGCHKTM
Sbjct: 123 GKKGKSNEKQPEKAEEVIHVRARRGQATDSHSLAERVRREKINEKMRCLQDLVPGCHKTM 182

Query: 199 GMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQEEEK 230
           GM ++LDE I YVHSLQNQVEFLSMELA A S   +N      + A GT SH  Q+ EK
Sbjct: 183 GMAVMLDEIINYVHSLQNQVEFLSMELAAASSAYDLNLETECIKKAQGTNSHAAQQMEK 238

[Close]

BLAST of CmaCh01G003810 vs. TrEMBL
Match: A0A067EV90_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017964mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 106/256 (41.41%), Postives = 142/256 (55.47%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFS--------EENFL 60
           M +FR++    ++S+A  E G+NME++  F  +  SMLE FN  +FS        +  FL
Sbjct: 1   MADFRENTQSLRASQAFTELGVNMEMVKHFAELKPSMLEYFNTPNFSLATPLAHQQPEFL 60

Query: 61  G---YHFQLPENTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTM---------- 120
               Y+       T S I   PR+   +   +  V+  SS      Q T           
Sbjct: 61  AGCSYNNSFSNFQTDSRIV-VPRVRTVRGNED--VLYESSRREVTEQSTSISKTMCSSAS 120

Query: 121 -------NRKSKQVLTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKI 180
                    K+K++ +  G+K    EKE+     ++H+RAKRG+AT SHS+AERVRREKI
Sbjct: 121 TSETQGDTYKNKKIRSRRGKKVSSNEKEEGNPERIIHVRAKRGQATDSHSIAERVRREKI 180

Query: 181 NNKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGA 229
           N K++CLQ LVPGCHK MGM  +L+E I YVHSLQNQVEFLSMELA ACS+  +N    +
Sbjct: 181 NKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFLSMELAAACSSNDLNIETES 240

[Close]

BLAST of CmaCh01G003810 vs. TrEMBL
Match: V4STF1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012453mg PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.2e-35
Identity = 106/256 (41.41%), Postives = 142/256 (55.47%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFS--------EENFL 60
           M +FR++    ++S+A  E G+NME++  F  +  SMLE FN  +FS        +  FL
Sbjct: 1   MADFRENTQSLRASQAFTELGVNMEMVKHFAELKPSMLEYFNTPNFSLATPLAHQQPEFL 60

Query: 61  G---YHFQLPENTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTM---------- 120
               Y+       T S I   PR+   +   +  V+  SS      Q T           
Sbjct: 61  AGCSYNNSFSNFQTDSRIV-VPRVHTVRGNED--VLYESSRREVTEQSTSISKTMCSSAS 120

Query: 121 -------NRKSKQVLTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKI 180
                    K+K++ +  G+K    EKE+     ++H+RAKRG+AT SHS+AERVRREKI
Sbjct: 121 TSETQGDTYKNKKIRSRRGKKVSSNEKEEGNPERIIHVRAKRGQATDSHSIAERVRREKI 180

Query: 181 NNKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGA 229
           N K++CLQ LVPGCHK MGM  +L+E I YVHSLQNQVEFLSMELA ACS+  +N    +
Sbjct: 181 NKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFLSMELAAACSSNDLNIETES 240

[Close]

BLAST of CmaCh01G003810 vs. TAIR10
Match: AT1G73830.1 (AT1G73830.1 BR enhanced expression 3)

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-29
Identity = 94/238 (39.50%), Postives = 127/238 (53.36%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVI-NQFPNMT--ESMLEDFNETDFSEENFLGYHFQ 60
           + E    LHHF++        L+     NQFP+    +S+  +F++  F   N       
Sbjct: 20  LAELSNTLHHFQTFPPPFSSSLDSLFFHNQFPDHFPGKSLENNFHQGIFFPSNI------ 79

Query: 61  LPENTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTLGG------ 120
             +N   SS S F      K ++    ++ S     +S QT++  S QV   G       
Sbjct: 80  --QNNEESS-SQFDTK---KRKSLMEAVSTSEN--SVSDQTLSTSSAQVSINGNISTKNN 139

Query: 121 ---RKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHK 180
              R +R   +E+EK  EVVH+RA+RG+AT SHS+AERVRR KIN +LKCLQ +VPGC+K
Sbjct: 140 SSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYK 199

Query: 181 TMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQE 227
           TMGM  +LDE I YV SLQNQVEFLSM+L  A S    NS   A  +    ++ E  E
Sbjct: 200 TMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVE 243

[Close]

BLAST of CmaCh01G003810 vs. TAIR10
Match: AT1G18400.1 (AT1G18400.1 BR enhanced expression 1)

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-28
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 107 LTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGC 166
           L  G R ++K E+E EK  EVVH+RA+RG+AT SHSLAERVRR KIN +L+CLQ +VPGC
Sbjct: 122 LRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGC 181

Query: 167 HKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEEQE 226
           +K MGM  +LDE I YV SLQNQVEFLSM+L  A S    NS   A  +    ++ E  E
Sbjct: 182 YKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVE 241

[Close]

BLAST of CmaCh01G003810 vs. TAIR10
Match: AT1G25330.1 (AT1G25330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-26
Identity = 69/129 (53.49%), Postives = 87/129 (67.44%), Query Frame = 1


Query: 110 GGRKRRKCEKEQE--------KHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQS 169
           G ++RRK  +E+E        K  +VVH+RAKRG+AT SHSLAERVRREKIN +LKCLQ 
Sbjct: 76  GSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQD 135

Query: 170 LVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINS-GMGATRTASGTR 229
           LVPGC+K MGM ++LD  I YV SLQNQ+EFLSM+L+ A +   +NS  +  T    G  
Sbjct: 136 LVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGN 195

[Close]

BLAST of CmaCh01G003810 vs. TAIR10
Match: AT1G10120.1 (AT1G10120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 93  DISQQTMNRKSKQVLTLGGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKI 152
           D S++T+N++S Q              E+      +H+RA+RG+AT+SHSLAERVRREKI
Sbjct: 182 DQSKETVNKESSQ-------------SEEAPKENYIHMRARRGQATNSHSLAERVRREKI 241

Query: 153 NNKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGIN 208
           + +++ LQ LVPGC+K  G  ++LDE I YV SLQ QVEFLSM+LAT    + I+
Sbjct: 242 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINID 283

[Close]

BLAST of CmaCh01G003810 vs. TAIR10
Match: AT3G07340.1 (AT3G07340.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-21
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 103 SKQVLTLGGRKRRKCEKEQEK---------HAEVVHIRAKRGEATHSHSLAERVRREKIN 162
           SK++        ++C+K +E          + + +H+RA+RG+AT SHSLAERVRREKI+
Sbjct: 222 SKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKIS 281

Query: 163 NKLKCLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGIN 208
            ++K LQ LVPGC+K  G  ++LDE I YV SLQ QVEFLSM+L++  + L  N
Sbjct: 282 ERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFN 335

[Close]

BLAST of CmaCh01G003810 vs. NCBI nr
Match: gi|778680713|ref|XP_011651380.1| (PREDICTED: transcription factor BEE 3-like isoform X4 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 4.8e-80
Identity = 169/247 (68.42%), Postives = 184/247 (74.49%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPE 60
           M EFRQ+L HFKSSKASEE   NMEVINQF N  ES LEDFNET+ S ENF GYHFQLPE
Sbjct: 1   MTEFRQNLQHFKSSKASEEMTFNMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPE 60

Query: 61  NTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTL----------- 120
           NT+ SS+S+F  +AL KCQ EFPVITRSS  VD   +TM RK KQV              
Sbjct: 61  NTSPSSLSNFSSVALLKCQKEFPVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGN 120

Query: 121 ------------GGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLK 180
                       GGRKRR  EKEQEK  EVVH+RAKRG+AT SHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNMEGGRKRRNYEKEQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 181 CLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTAS 225
           CLQ+++PGCHK+MGM MVLDETI YV+SLQNQVEFLSMELA ACSTLGIN GMG  R A 
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKAL 240

[Close]

BLAST of CmaCh01G003810 vs. NCBI nr
Match: gi|659114293|ref|XP_008456996.1| (PREDICTED: transcription factor BEE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 2.2e-77
Identity = 163/237 (68.78%), Postives = 181/237 (76.37%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPE 60
           M EFRQ+L HFKSSKASEE   NMEVINQF N TES+LEDFNET+ S ENF GYHFQLPE
Sbjct: 1   MREFRQNLQHFKSSKASEEMTFNMEVINQFSNATESVLEDFNETESSVENFWGYHFQLPE 60

Query: 61  NTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTL----------- 120
           NT+ SS+S+F  +AL KCQ +FPVITRSS LVD +Q+TM RK KQV              
Sbjct: 61  NTSPSSLSNFSSVALLKCQKDFPVITRSSLLVDSAQETMKRKEKQVSESNSGILCAAFGN 120

Query: 121 ------------GGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLK 180
                       GGRKRR CEKEQEK   VVH+RAKRG+AT SHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNLGGGRKRRNCEKEQEKPG-VVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 181 CLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLGINSGMGATR 215
           CLQ+++PGCHK+MGM MVLDETI YV+SLQNQVEFLSMELA ACSTLGIN GMG  R
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLGINFGMGDNR 236

[Close]

BLAST of CmaCh01G003810 vs. NCBI nr
Match: gi|778680705|ref|XP_011651377.1| (PREDICTED: transcription factor BEE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 169/275 (61.45%), Postives = 184/275 (66.91%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPE 60
           M EFRQ+L HFKSSKASEE   NMEVINQF N  ES LEDFNET+ S ENF GYHFQLPE
Sbjct: 1   MTEFRQNLQHFKSSKASEEMTFNMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPE 60

Query: 61  NTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTL----------- 120
           NT+ SS+S+F  +AL KCQ EFPVITRSS  VD   +TM RK KQV              
Sbjct: 61  NTSPSSLSNFSSVALLKCQKEFPVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGN 120

Query: 121 ------------GGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLK 180
                       GGRKRR  EKEQEK  EVVH+RAKRG+AT SHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNMEGGRKRRNYEKEQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 181 CLQSLVPGCHK----------------------------TMGMTMVLDETITYVHSLQNQ 225
           CLQ+++PGCHK                            +MGM MVLDETI YV+SLQNQ
Sbjct: 181 CLQNIIPGCHKVNCFFHGPVQNIGVSTLMFKQNFQIILQSMGMAMVLDETINYVYSLQNQ 240

[Close]

BLAST of CmaCh01G003810 vs. NCBI nr
Match: gi|659114295|ref|XP_008456998.1| (PREDICTED: transcription factor BEE 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 3.0e-74
Identity = 157/228 (68.86%), Postives = 175/228 (76.75%), Query Frame = 1


Query: 1   MIEFRQDLHHFKSSKASEERGLNMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPE 60
           M EFRQ+L HFKSSKASEE   NMEVINQF N TES+LEDFNET+ S ENF GYHFQLPE
Sbjct: 1   MREFRQNLQHFKSSKASEEMTFNMEVINQFSNATESVLEDFNETESSVENFWGYHFQLPE 60

Query: 61  NTTRSSISDFPRLALWKCQNEFPVITRSSPLVDISQQTMNRKSKQVLTL----------- 120
           NT+ SS+S+F  +AL KCQ +FPVITRSS LVD +Q+TM RK KQV              
Sbjct: 61  NTSPSSLSNFSSVALLKCQKDFPVITRSSLLVDSAQETMKRKEKQVSESNSGILCAAFGN 120

Query: 121 ------------GGRKRRKCEKEQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLK 180
                       GGRKRR CEKEQEK   VVH+RAKRG+AT SHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNLGGGRKRRNCEKEQEKPG-VVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 181 CLQSLVPGCHKTMGMTMVLDETITYVHSLQNQVEFLSMELATACSTLG 206
           CLQ+++PGCHK+MGM MVLDETI YV+SLQNQVEFLSMELA ACSTLG
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLG 227

[Close]

BLAST of CmaCh01G003810 vs. NCBI nr
Match: gi|700202628|gb|KGN57761.1| (hypothetical protein Csa_3G282490 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 3.1e-71
Identity = 153/225 (68.00%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 23  NMEVINQFPNMTESMLEDFNETDFSEENFLGYHFQLPENTTRSSISDFPRLALWKCQNEF 82
           NMEVINQF N  ES LEDFNET+ S ENF GYHFQLPENT+ SS+S+F  +AL KCQ EF
Sbjct: 4   NMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPENTSPSSLSNFSSVALLKCQKEF 63

Query: 83  PVITRSSPLVDISQQTMNRKSKQVLTL-----------------------GGRKRRKCEK 142
           PVITRSS  VD   +TM RK KQV                          GGRKRR  EK
Sbjct: 64  PVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGNDSSNARSSKNMEGGRKRRNYEK 123

Query: 143 EQEKHAEVVHIRAKRGEATHSHSLAERVRREKINNKLKCLQSLVPGCHKTMGMTMVLDET 202
           EQEK  EVVH+RAKRG+AT SHSLAERVRREKIN+KLKCLQ+++PGCHK+MGM MVLDET
Sbjct: 124 EQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLKCLQNIIPGCHKSMGMAMVLDET 183

Query: 203 ITYVHSLQNQVEFLSMELATACSTLGINSGMGATRTASGTRSHEE 225
           I YV+SLQNQVEFLSMELA ACSTLGIN GMG  R A GTRSHEE
Sbjct: 184 INYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKALGTRSHEE 228

The following BLAST results are available for this feature:

BLAST of CmaCh01G003810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BEE3_ARATH	9.4e-28	39.50	Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1	[more]
BEE1_ARATH	8.0e-27	56.67	Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1	[more]
BH075_ARATH	5.7e-25	53.49	Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1	[more]
BH074_ARATH	3.2e-20	48.70	Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=1 SV=1	[more]
BH062_ARATH	5.5e-20	47.37	Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1	[more]

BLAST of CmaCh01G003810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH4_CUCSA	2.2e-71	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282490 PE=4 SV=1	[more]
U5GG63_POPTR	1.5e-35	42.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1	[more]
A0A061EIH6_THECC	5.5e-35	42.26	Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca...	[more]
A0A067EV90_CITSI	5.5e-35	41.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017964mg PE=4 SV=1	[more]
V4STF1_9ROSI	7.2e-35	41.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012453mg PE=4 SV=1	[more]

BLAST of CmaCh01G003810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73830.1	5.3e-29	39.50	BR enhanced expression 3	[more]
AT1G18400.1	4.5e-28	56.67	BR enhanced expression 1	[more]
AT1G25330.1	3.2e-26	53.49	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10120.1	1.8e-21	48.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G07340.1	3.1e-21	47.37	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmaCh01G003810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680713\|ref\|XP_011651380.1\|	4.8e-80	68.42	PREDICTED: transcription factor BEE 3-like isoform X4 [Cucumis sativus]	[more]
gi\|659114293\|ref\|XP_008456996.1\|	2.2e-77	68.78	PREDICTED: transcription factor BEE 3-like isoform X2 [Cucumis melo]	[more]
gi\|778680705\|ref\|XP_011651377.1\|	1.6e-75	61.45	PREDICTED: transcription factor BEE 3-like isoform X1 [Cucumis sativus]	[more]
gi\|659114295\|ref\|XP_008456998.1\|	3.0e-74	68.86	PREDICTED: transcription factor BEE 3-like isoform X3 [Cucumis melo]	[more]
gi\|700202628\|gb\|KGN57761.1\|	3.1e-71	68.00	hypothetical protein Csa_3G282490 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003810.1	CmaCh01G003810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 138..199 score: 1.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 140..187 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 142..192 score: 3.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 136..186 score: 14
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 134..198 score: 1.83
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 110..210 score: 5.8E-53coord: 15..21 score: 5.8
None	No IPR available	PANTHER	PTHR12565:SF128	TRANSCRIPTION FACTOR BHLH75	coord: 15..21 score: 5.8E-53coord: 110..210 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003810	Cucsa.031290	Cucumber (Gy14) v1	cgycmaB0011
CmaCh01G003810	Cla013237	Watermelon (97103) v1	cmawmB434
CmaCh01G003810	Csa3G282490	Cucumber (Chinese Long) v2	cmacuB455
CmaCh01G003810	MELO3C020189	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003810	ClCG05G011630	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003810	CSPI03G20800	Wild cucumber (PI 183967)	cmacpiB458
CmaCh01G003810	CmoCh14G008300	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003810	Lsi05G003760	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003810	Cp4.1LG02g16960	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003810	Cp4.1LG03g06130	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003810	MELO3C020189.2	Melon (DHL92) v3.6.1	cmamedB496
CmaCh01G003810	CsaV3_3G020750	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003810	Cla97C05G093690	Watermelon (97103) v2	cmawmbB473
CmaCh01G003810	Bhi01G001473	Wax gourd	cmawgoB0562
CmaCh01G003810	CsGy3G020400	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003810	Carg22266	Silver-seed gourd	carcmaB0669

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G003810	CmaCh14G008170	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003810	Silver-seed gourd	carcmaB1059
CmaCh01G003810	Cucurbita moschata (Rifu)	cmacmoB468