Cla97C05G096630 (gene) Watermelon (97103) v2

NameCla97C05G096630
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionsplicing factor, proline- and glutamine-rich-like
LocationCla97Chr05 : 25637768 .. 25638328 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATTCCTATTTTCTAGACCGACCGGCCGCCACCGGCTACAACCCCACCAGAATTTCAAATAAGTTTCCCCTTGAAAATACCGCTGTTTCTGGTTACACCCACGGCGGACTTTTGCAAACGCCGCCGCGGTTCCTCTCAGCTCCGTCATTCCACAGCCACCAATTTTACCCTTTCATCCAGCAACAACAACCACCGCCTCTCCTTCCGCCGCCGAGTACTCTACGGCCCCACCGCTCTCTTCCTTCTCAACCCCGATTCCACTCGCTTAAGAAATCCAAATCCACAAAAAGAGACAAAGACTCGGCGGCGGCGGTGGATCGGAGGATTTCTTCTAGAACCTTCTCGTCGGCGGCGGGGAAGAGGGTCGTTAGAGTTGAGGAATTGGAGAAATTGTCGGGGTGTTTATTTGCGGTTATTTCTCCGCCGCCCAGCAGTTTGCCGCTGCCCAAATTTTCTCTGAGGCCGGCGAAGCTTAATTGCAACGTGGAGGCTGCCGGAGCCGACGACGGAGCCGCCGCAGCGGACGATCTCCGGCGACTTCTTCGCCTTCACTGA

mRNA sequence

ATGGCCGATTCCTATTTTCTAGACCGACCGGCCGCCACCGGCTACAACCCCACCAGAATTTCAAATAAGTTTCCCCTTGAAAATACCGCTGTTTCTGGTTACACCCACGGCGGACTTTTGCAAACGCCGCCGCGGTTCCTCTCAGCTCCGTCATTCCACAGCCACCAATTTTACCCTTTCATCCAGCAACAACAACCACCGCCTCTCCTTCCGCCGCCGAGTACTCTACGGCCCCACCGCTCTCTTCCTTCTCAACCCCGATTCCACTCGCTTAAGAAATCCAAATCCACAAAAAGAGACAAAGACTCGGCGGCGGCGGTGGATCGGAGGATTTCTTCTAGAACCTTCTCGTCGGCGGCGGGGAAGAGGGTCGTTAGAGTTGAGGAATTGGAGAAATTGTCGGGGTGTTTATTTGCGGTTATTTCTCCGCCGCCCAGCAGTTTGCCGCTGCCCAAATTTTCTCTGAGGCCGGCGAAGCTTAATTGCAACGTGGAGGCTGCCGGAGCCGACGACGGAGCCGCCGCAGCGGACGATCTCCGGCGACTTCTTCGCCTTCACTGA

Coding sequence (CDS)

ATGGCCGATTCCTATTTTCTAGACCGACCGGCCGCCACCGGCTACAACCCCACCAGAATTTCAAATAAGTTTCCCCTTGAAAATACCGCTGTTTCTGGTTACACCCACGGCGGACTTTTGCAAACGCCGCCGCGGTTCCTCTCAGCTCCGTCATTCCACAGCCACCAATTTTACCCTTTCATCCAGCAACAACAACCACCGCCTCTCCTTCCGCCGCCGAGTACTCTACGGCCCCACCGCTCTCTTCCTTCTCAACCCCGATTCCACTCGCTTAAGAAATCCAAATCCACAAAAAGAGACAAAGACTCGGCGGCGGCGGTGGATCGGAGGATTTCTTCTAGAACCTTCTCGTCGGCGGCGGGGAAGAGGGTCGTTAGAGTTGAGGAATTGGAGAAATTGTCGGGGTGTTTATTTGCGGTTATTTCTCCGCCGCCCAGCAGTTTGCCGCTGCCCAAATTTTCTCTGAGGCCGGCGAAGCTTAATTGCAACGTGGAGGCTGCCGGAGCCGACGACGGAGCCGCCGCAGCGGACGATCTCCGGCGACTTCTTCGCCTTCACTGA

Protein sequence

MADSYFLDRPAATGYNPTRISNKFPLENTAVSGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQPPPLLPPPSTLRPHRSLPSQPRFHSLKKSKSTKRDKDSAAAVDRRISSRTFSSAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLH
BLAST of Cla97C05G096630 vs. NCBI nr
Match: KGN60046.1 (hypothetical protein Csa_3G873260 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 5.6e-67
Identity = 151/195 (77.44%), Postives = 161/195 (82.56%), Query Frame = 0

Query: 1   MADSYFLDRPAATGYNPTRISNKFPLEN-TAVSGYTHGGLLQTPPRFLSAPSFHSHQFYP 60
           MAD YFLDR  +TG+N TRISN F LEN  AVSG++HGGLLQTPPRFLSAPSFH+HQ YP
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQ-----XXXXXXXXXXXXXLRPHRSLPSQPRFHSLKKSKSTKRDKDSAAAVDRRISSR 120
           F Q     XXXXXXX      +RPHRSLPSQPR HSLKKSKST+++KDSAA VDRRI SR
Sbjct: 61  FFQQNKSPXXXXXXXTPTQSNIRPHRSLPSQPRSHSLKKSKSTRKEKDSAAVVDRRIPSR 120

Query: 121 TFSS--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADD 180
           T SS  A  KRVVRVEELEKLSGC F VISPPPSSLPLPKFS+RPAK LNCNVEA G DD
Sbjct: 121 TISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCNVEAVGVDD 180

Query: 181 GAAAADDLRRLLRLH 187
           GAAAADDLRRLLRLH
Sbjct: 181 GAAAADDLRRLLRLH 195

BLAST of Cla97C05G096630 vs. NCBI nr
Match: XP_008466665.1 (PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 146/193 (75.65%), Postives = 153/193 (79.27%), Query Frame = 0

Query: 1   MADSYFLDRPAATGYNPTRISNKFPLEN-TAVSGYTHGGLLQTPPRFLSAPSFHSHQFYP 60
           MAD YFLDR  +TG+N TRI+N F LEN  AVSGY+HGGLLQTPPRFLSAPSFH+HQ YP
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQ----XXXXXXXXXXXXXLRPHRSLPSQPRFHSLKKSKSTKRDKDSAAAVDRRISSRT 120
           F Q    XXXXXXXXXXX  LRPHRSL SQPR              DSA  VDRRI SRT
Sbjct: 61  FFQXXXXXXXXXXXXXXXSNLRPHRSLHSQPRSXXXXXXXXXXXXXDSATVVDRRIPSRT 120

Query: 121 FSSA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGA 180
            SSA A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGA
Sbjct: 121 ISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCNVEAAGADDGA 180

Query: 181 AAADDLRRLLRLH 187
           AAADDLRRLLRLH
Sbjct: 181 AAADDLRRLLRLH 193

BLAST of Cla97C05G096630 vs. NCBI nr
Match: XP_022139188.1 (uncharacterized protein LOC111010153 [Momordica charantia])

HSP 1 Score: 197.6 bits (501), Expect = 3.8e-47
Identity = 135/199 (67.84%), Postives = 145/199 (72.86%), Query Frame = 0

Query: 1   MADSYFLDRPAATGYNPTR---ISN---KFPLEN-TAVSGYTHGGLLQTPPRFLSAPS-F 60
           MAD YFLDRP   GYN TR   ISN    + LEN  A +G  HGGLL+TPPRF SAPS  
Sbjct: 1   MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60

Query: 61  HSHQFYPFIQXXXXXXXXXXXXXLRPHRSLPSQP-RFHSL--KKSKSTKRDKD--SAAAV 120
           H HQF+PFIQ       XXXXXX    RSLPSQP R HSL  KKSKS KR +   S A V
Sbjct: 61  HGHQFHPFIQ--LQPPPXXXXXXXXXXRSLPSQPARSHSLNPKKSKSAKRSEKSFSPAVV 120

Query: 121 DRRISSRTFS-SAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEA 180
           DRR +SRT S +AA KRVV+VEEL+ LSGCLFA +SPPPSSLPLPKF LRPAKLNCNVEA
Sbjct: 121 DRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLNCNVEA 180

Query: 181 AGADDGAAAADDLRRLLRL 186
           AG DDGA  ADDLRRLLRL
Sbjct: 181 AGVDDGATTADDLRRLLRL 195

BLAST of Cla97C05G096630 vs. NCBI nr
Match: XP_023901401.1 (uncharacterized protein LOC112013246 [Quercus suber] >POE49672.1 hypothetical protein CFP56_05887 [Quercus suber])

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 73/179 (40.78%), Postives = 86/179 (48.04%), Query Frame = 0

Query: 39  LLQTPPRFLSAPSFHSHQFYPFIQXXXXXXXXXXXXXLRPHRSLPSQPRFHSL--KKSKS 98
           L Q  P  L  P+  +HQ  P                  P    P++PR  SL  KKSK 
Sbjct: 67  LQQQQPPLLPLPNPITHQSLP----------SRTRGLSSPPTRKPNKPRDQSLTPKKSKP 126

Query: 99  TKRD--KDSAAAVDRRIS----------------------SRTFSSAAG-----KRVVRV 158
           TKR+  K         +S                      SR  SSAAG      +VV  
Sbjct: 127 TKREDPKQDLKTTTHALSQCLIIASTKRLGPDPNDLPKDVSRVLSSAAGGGKSFGKVVGA 186

Query: 159 EELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLH 187
           EE EK SG +F+ ++PPPSSLPLPKFSLRP KL CNVEA+   D A A D+LRRLLRLH
Sbjct: 187 EEFEKFSGSVFS-LAPPPSSLPLPKFSLRP-KLRCNVEASAGID-AGATDNLRRLLRLH 232

BLAST of Cla97C05G096630 vs. NCBI nr
Match: XP_006473685.1 (uncharacterized protein LOC102611662 isoform X1 [Citrus sinensis])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 124 VVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLL 183
           +V V++LEK SG LF V SPPPSSLPLPKF+LRP  ++CN EAAG D  A A D+LRRLL
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKPISCNAEAAGVD--AGATDNLRRLL 218

Query: 184 RL 186
           RL
Sbjct: 220 RL 218

BLAST of Cla97C05G096630 vs. TrEMBL
Match: tr|A0A0A0LJ69|A0A0A0LJ69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.7e-67
Identity = 151/195 (77.44%), Postives = 161/195 (82.56%), Query Frame = 0

Query: 1   MADSYFLDRPAATGYNPTRISNKFPLEN-TAVSGYTHGGLLQTPPRFLSAPSFHSHQFYP 60
           MAD YFLDR  +TG+N TRISN F LEN  AVSG++HGGLLQTPPRFLSAPSFH+HQ YP
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQ-----XXXXXXXXXXXXXLRPHRSLPSQPRFHSLKKSKSTKRDKDSAAAVDRRISSR 120
           F Q     XXXXXXX      +RPHRSLPSQPR HSLKKSKST+++KDSAA VDRRI SR
Sbjct: 61  FFQQNKSPXXXXXXXTPTQSNIRPHRSLPSQPRSHSLKKSKSTRKEKDSAAVVDRRIPSR 120

Query: 121 TFSS--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADD 180
           T SS  A  KRVVRVEELEKLSGC F VISPPPSSLPLPKFS+RPAK LNCNVEA G DD
Sbjct: 121 TISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCNVEAVGVDD 180

Query: 181 GAAAADDLRRLLRLH 187
           GAAAADDLRRLLRLH
Sbjct: 181 GAAAADDLRRLLRLH 195

BLAST of Cla97C05G096630 vs. TrEMBL
Match: tr|A0A1S3CRS4|A0A1S3CRS4_CUCME (uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 146/193 (75.65%), Postives = 153/193 (79.27%), Query Frame = 0

Query: 1   MADSYFLDRPAATGYNPTRISNKFPLEN-TAVSGYTHGGLLQTPPRFLSAPSFHSHQFYP 60
           MAD YFLDR  +TG+N TRI+N F LEN  AVSGY+HGGLLQTPPRFLSAPSFH+HQ YP
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQ----XXXXXXXXXXXXXLRPHRSLPSQPRFHSLKKSKSTKRDKDSAAAVDRRISSRT 120
           F Q    XXXXXXXXXXX  LRPHRSL SQPR              DSA  VDRRI SRT
Sbjct: 61  FFQXXXXXXXXXXXXXXXSNLRPHRSLHSQPRSXXXXXXXXXXXXXDSATVVDRRIPSRT 120

Query: 121 FSSA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGA 180
            SSA A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGA
Sbjct: 121 ISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCNVEAAGADDGA 180

Query: 181 AAADDLRRLLRLH 187
           AAADDLRRLLRLH
Sbjct: 181 AAADDLRRLLRLH 193

BLAST of Cla97C05G096630 vs. TrEMBL
Match: tr|A0A2P4H083|A0A2P4H083_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_05887 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 73/179 (40.78%), Postives = 86/179 (48.04%), Query Frame = 0

Query: 39  LLQTPPRFLSAPSFHSHQFYPFIQXXXXXXXXXXXXXLRPHRSLPSQPRFHSL--KKSKS 98
           L Q  P  L  P+  +HQ  P                  P    P++PR  SL  KKSK 
Sbjct: 67  LQQQQPPLLPLPNPITHQSLP----------SRTRGLSSPPTRKPNKPRDQSLTPKKSKP 126

Query: 99  TKRD--KDSAAAVDRRIS----------------------SRTFSSAAG-----KRVVRV 158
           TKR+  K         +S                      SR  SSAAG      +VV  
Sbjct: 127 TKREDPKQDLKTTTHALSQCLIIASTKRLGPDPNDLPKDVSRVLSSAAGGGKSFGKVVGA 186

Query: 159 EELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLH 187
           EE EK SG +F+ ++PPPSSLPLPKFSLRP KL CNVEA+   D A A D+LRRLLRLH
Sbjct: 187 EEFEKFSGSVFS-LAPPPSSLPLPKFSLRP-KLRCNVEASAGID-AGATDNLRRLLRLH 232

BLAST of Cla97C05G096630 vs. TrEMBL
Match: tr|A0A067H1W0|A0A067H1W0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039600mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 124 VVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLL 183
           +V V++LEK SG LF V SPPPSSLPLPKF+LRP  ++CN EAAG D  A A D+LRRLL
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKPISCNAEAAGVD--AGATDNLRRLL 218

Query: 184 RL 186
           RL
Sbjct: 220 RL 218

BLAST of Cla97C05G096630 vs. TrEMBL
Match: tr|V4SL18|V4SL18_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002425mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 124 VVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLL 183
           +V V++LEK SG LF V SPPPSSLPLPKF+LRP  ++CN EAAG D  A A D+LRRLL
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKLISCNAEAAGVD--AGATDNLRRLL 218

Query: 184 RL 186
           RL
Sbjct: 220 RL 218

BLAST of Cla97C05G096630 vs. TAIR10
Match: AT1G20070.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 128 EELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRL 186
           E  +   G    ++SPPPSSLP+P+FS++P KL CNVEAAG  D   A +++RR+L+L
Sbjct: 138 EGFDGYPGPAIMLLSPPPSSLPMPRFSIKP-KLRCNVEAAGKSD--VATNNIRRVLQL 192

BLAST of Cla97C05G096630 vs. TAIR10
Match: AT3G21570.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 4.8e-04
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 0

Query: 134 SGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRL 186
           +G     +SP PSSLPLP FS + AK    V     DD  +A+ DLRRLLRL
Sbjct: 87  AGSSIFAVSPAPSSLPLPSFSKKKAK--SQVVVVSIDD--SASQDLRRLLRL 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60046.15.6e-6777.44hypothetical protein Csa_3G873260 [Cucumis sativus][more]
XP_008466665.12.5e-5975.65PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo][more]
XP_022139188.13.8e-4767.84uncharacterized protein LOC111010153 [Momordica charantia][more]
XP_023901401.13.9e-1240.78uncharacterized protein LOC112013246 [Quercus suber] >POE49672.1 hypothetical pr... [more]
XP_006473685.11.9e-1167.74uncharacterized protein LOC102611662 isoform X1 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
tr|A0A0A0LJ69|A0A0A0LJ69_CUCSA3.7e-6777.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1[more]
tr|A0A1S3CRS4|A0A1S3CRS4_CUCME1.7e-5975.65uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=... [more]
tr|A0A2P4H083|A0A2P4H083_QUESU2.6e-1240.78Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_05887 PE=4 SV=1[more]
tr|A0A067H1W0|A0A067H1W0_CITSI1.3e-1167.74Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039600mg PE=4 SV=1[more]
tr|V4SL18|V4SL18_9ROSI1.7e-1167.74Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002425mg PE=4 ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G20070.11.4e-0850.00unknown protein[more]
AT3G21570.14.8e-0450.00unknown protein[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G096630.1Cla97C05G096630.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..79
NoneNo IPR availablePANTHERPTHR33670FAMILY NOT NAMEDcoord: 123..185
NoneNo IPR availablePANTHERPTHR33670:SF2SUBFAMILY NOT NAMEDcoord: 123..185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None