Carg17208 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17208
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_110 : 427849 .. 428355 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

mRNA sequence

ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

Coding sequence (CDS)

ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

Protein sequence

MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPFIQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA

Homology

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BLAST of Carg17208 vs. NCBI nr
Match: KGN60046.1 (hypothetical protein Csa_3G873260 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 117/173 (67.63%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR+SN FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FI---XXXXXXXXXXXXXXXXXXXXRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPS 120
           F       XXXXXXX          R+L SQPR SHSLKKSKS +++KDSAAVVDRR+PS
Sbjct: 61  FFQQNKSPXXXXXXXTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPS 120

Query: 121 RTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           RT SS  A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RP K LNCN
Sbjct: 121 RTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCN 172

[Close]

BLAST of Carg17208 vs. NCBI nr
Match: XP_008466665.1 (PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 9.0e-40
Identity = 112/171 (65.50%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FI--XXXXXXXXXXXXXXXXXXXXRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSR 120
           F   XXXXXXXXXXXXXX      R+L SQPR S             DSA VVDRR+PSR
Sbjct: 61  FFQXXXXXXXXXXXXXXXSNLRPHRSLHSQPR-SXXXXXXXXXXXXXDSATVVDRRIPSR 120

Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           T SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

[Close]

BLAST of Carg17208 vs. NCBI nr
Match: XP_022139188.1 (uncharacterized protein LOC111010153 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 117/179 (65.36%), Postives = 129/179 (72.07%), Query Frame = 0


Query: 1   MADPYFLDRTSTSGYKPTR---VSN---EFHLQN-AAVYGGSHGGLLQTPPRFFSVPS-I 60
           MADPYFLDR   +GY  TR   +SN    ++L+N AA  G +HGGLL+TPPRFFS PS I
Sbjct: 1   MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60

Query: 61  HSHQLLPFIXXXXXXXXXXXXXXXXXXXXRTLSSQPRSSHSL--KKSKSIKRDKD--SAA 120
           H HQ  PFI          XXXXXXXXXXR+L SQP  SHSL  KKSKS KR +   S A
Sbjct: 61  HGHQFHPFI----QLQPPPXXXXXXXXXXRSLPSQPARSHSLNPKKSKSAKRSEKSFSPA 120

Query: 121 VVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCN 168
           VVDRR  SRT S+ AAAKRVV+VEE D LSGCLFA +SPPPSSLPLPKFCLRP KLNCN
Sbjct: 121 VVDRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLNCN 173

[Close]

BLAST of Carg17208 vs. NCBI nr
Match: XP_006473685.1 (uncharacterized protein LOC102611662 isoform X1 [Citrus sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 128 VVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 169
           +V V++ +K SG LF V SPPPSSLPLPKF LRP  ++CNA
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKPISCNA 199

[Close]

BLAST of Carg17208 vs. NCBI nr
Match: XP_006473686.1 (uncharacterized protein LOC102611662 isoform X2 [Citrus sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 128 VVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 169
           +V V++ +K SG LF V SPPPSSLPLPKF LRP  ++CNA
Sbjct: 141 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKPISCNA 180

[Close]

BLAST of Carg17208 vs. TAIR10
Match: AT1G20070.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 116 SRTFSSPAAAKRVVRVEE-FDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCN 168
           +RT S P  A ++    E FD   G    ++SPPPSSLP+P+F ++P KL CN
Sbjct: 121 TRTGSVPIQANQLRDFPEGFDGYPGPAIMLLSPPPSSLPMPRFSIKP-KLRCN 172

[Close]

BLAST of Carg17208 vs. TrEMBL
Match: tr|A0A0A0LJ69|A0A0A0LJ69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.5e-47
Identity = 117/173 (67.63%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR+SN FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FI---XXXXXXXXXXXXXXXXXXXXRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPS 120
           F       XXXXXXX          R+L SQPR SHSLKKSKS +++KDSAAVVDRR+PS
Sbjct: 61  FFQQNKSPXXXXXXXTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRIPS 120

Query: 121 RTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           RT SS  A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RP K LNCN
Sbjct: 121 RTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCN 172

[Close]

BLAST of Carg17208 vs. TrEMBL
Match: tr|A0A1S3CRS4|A0A1S3CRS4_CUCME (uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.9e-40
Identity = 112/171 (65.50%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FI--XXXXXXXXXXXXXXXXXXXXRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSR 120
           F   XXXXXXXXXXXXXX      R+L SQPR S             DSA VVDRR+PSR
Sbjct: 61  FFQXXXXXXXXXXXXXXXSNLRPHRSLHSQPR-SXXXXXXXXXXXXXDSATVVDRRIPSR 120

Query: 121 TFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           T SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 TISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

[Close]

BLAST of Carg17208 vs. TrEMBL
Match: tr|A0A2N9FQW5|A0A2N9FQW5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17475 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 119 FSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNC 167
           F S +++K VV  EEF+K SG +F+ ++PPPSSLPLPKF LRP KL+C
Sbjct: 161 FLSSSSSKVVVGAEEFEKFSGAVFS-LAPPPSSLPLPKFSLRP-KLSC 206

[Close]

BLAST of Carg17208 vs. TrEMBL
Match: tr|A0A067H1W0|A0A067H1W0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039600mg PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 128 VVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 169
           +V V++ +K SG LF V SPPPSSLPLPKF LRP  ++CNA
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKPISCNA 199

[Close]

BLAST of Carg17208 vs. TrEMBL
Match: tr|V4SL18|V4SL18_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002425mg PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 128 VVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 169
           +V V++ +K SG LF V SPPPSSLPLPKF LRP  ++CNA
Sbjct: 160 IVAVKDLEKFSGSLFTV-SPPPSSLPLPKFALRPKLISCNA 199

The following BLAST results are available for this feature:

BLAST of Carg17208 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60046.1	1.3e-46	67.63	hypothetical protein Csa_3G873260 [Cucumis sativus]	[more]
XP_008466665.1	9.0e-40	65.50	PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo]	[more]
XP_022139188.1	4.9e-38	65.36	uncharacterized protein LOC111010153 [Momordica charantia]	[more]
XP_006473685.1	1.6e-04	63.41	uncharacterized protein LOC102611662 isoform X1 [Citrus sinensis]	[more]
XP_006473686.1	1.6e-04	63.41	uncharacterized protein LOC102611662 isoform X2 [Citrus sinensis]	[more]

BLAST of Carg17208 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20070.1	1.9e-04	45.28	unknown protein	[more]

BLAST of Carg17208 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17208 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ69\|A0A0A0LJ69_CUCSA	8.5e-47	67.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1	[more]
tr\|A0A1S3CRS4\|A0A1S3CRS4_CUCME	5.9e-40	65.50	uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=...	[more]
tr\|A0A2N9FQW5\|A0A2N9FQW5_FAGSY	1.1e-04	60.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17475 PE=4 SV=1	[more]
tr\|A0A067H1W0\|A0A067H1W0_CITSI	1.1e-04	63.41	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039600mg PE=4 SV=1	[more]
tr\|V4SL18\|V4SL18_9ROSI	1.4e-04	63.41	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002425mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17208-RA	Carg17208-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17208	Cla007441	Watermelon (97103) v1	carwmB0946
Carg17208	Csa3G873260	Cucumber (Chinese Long) v2	carcuB0961
Carg17208	MELO3C003742	Melon (DHL92) v3.5.1	carmeB0928
Carg17208	ClCG05G015580	Watermelon (Charleston Gray)	carwcgB0921
Carg17208	CSPI03G43520	Wild cucumber (PI 183967)	carcpiB0984
Carg17208	CmaCh01G019820	Cucurbita maxima (Rimu)	carcmaB1293
Carg17208	CmoCh01G020400	Cucurbita moschata (Rifu)	carcmoB1263
Carg17208	Lsi04G017590	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17208	Cp4.1LG02g08090	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17208	MELO3C003742.2	Melon (DHL92) v3.6.1	carmedB0934
Carg17208	CsaV3_3G045970	Cucumber (Chinese Long) v3	carcucB0989
Carg17208	Cla97C05G096630	Watermelon (97103) v2	carwmbB0995
Carg17208	Bhi09G001774	Wax gourd	carwgoB1097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17208	Silver-seed gourd	carcarB125
Carg17208	Cucumber (Gy14) v2	carcgybB0934
Carg17208	Cucumber (Gy14) v1	carcgyB1066
Carg17208	Cucurbita maxima (Rimu)	carcmaB1291
Carg17208	Cucurbita moschata (Rifu)	carcmoB1261
Carg17208	Cucurbita pepo (Zucchini)	carcpeB1310