Cla97C02G032470 (gene) Watermelon (97103) v2

Overview
NameCla97C02G032470
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 5578398 .. 5578634 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

mRNA sequence

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Coding sequence (CDS)

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Protein sequence

MKISPTLEMCMSELAKFRDRFGASSRRFLPKIRDEAATDRRQKSIQEATEQSRAIEDQKEVILSESTIFLLIDRFIVW
Homology
[Close]
BLAST of Cla97C02G032470 vs. NCBI nr
Match: KGN43976.1 (hypothetical protein Csa_7G075565 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

[Close]
BLAST of Cla97C02G032470 vs. TrEMBL
Match: tr|A0A0A0K854|A0A0A0K854_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

The following BLAST results are available for this feature:
BLAST of Cla97C02G032470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43976.12.7e-1566.67hypothetical protein Csa_7G075565 [Cucumis sativus][more]
BLAST of Cla97C02G032470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K854|A0A0A0K854_CUCSA1.8e-1566.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1[more]
BLAST of Cla97C02G032470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G032470 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G032470.1Cla97C02G032470.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G032470Cla015973Watermelon (97103) v1wmwmbB317
Cla97C02G032470ClCG02G005480Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G032470CmoCh19G006510Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G032470Bhi05G001035Wax gourdwgowmbB250
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G032470Watermelon (97103) v2wmbwmbB108
Cla97C02G032470Watermelon (97103) v2wmbwmbB115
Cla97C02G032470Silver-seed gourdcarwmbB0212
Cla97C02G032470Silver-seed gourdcarwmbB0846
Cla97C02G032470Silver-seed gourdcarwmbB0930
Cla97C02G032470Cucumber (Gy14) v2cgybwmbB117
Cla97C02G032470Cucumber (Gy14) v2cgybwmbB503
Cla97C02G032470Cucumber (Gy14) v1cgywmbB151
Cla97C02G032470Cucumber (Gy14) v1cgywmbB395
Cla97C02G032470Cucurbita maxima (Rimu)cmawmbB104
Cla97C02G032470Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G032470Cucurbita maxima (Rimu)cmawmbB619
Cla97C02G032470Cucurbita maxima (Rimu)cmawmbB681
Cla97C02G032470Cucurbita maxima (Rimu)cmawmbB886
Cla97C02G032470Cucurbita moschata (Rifu)cmowmbB088
Cla97C02G032470Cucurbita moschata (Rifu)cmowmbB592
Cla97C02G032470Wild cucumber (PI 183967)cpiwmbB124
Cla97C02G032470Wild cucumber (PI 183967)cpiwmbB554
Cla97C02G032470Cucumber (Chinese Long) v3cucwmbB126
Cla97C02G032470Cucumber (Chinese Long) v3cucwmbB550
Cla97C02G032470Cucumber (Chinese Long) v2cuwmbB123
Cla97C02G032470Cucumber (Chinese Long) v2cuwmbB530
Cla97C02G032470Bottle gourd (USVL1VR-Ls)lsiwmbB056
Cla97C02G032470Bottle gourd (USVL1VR-Ls)lsiwmbB086
Cla97C02G032470Melon (DHL92) v3.6.1medwmbB166
Cla97C02G032470Melon (DHL92) v3.5.1mewmbB180
Cla97C02G032470Watermelon (Charleston Gray)wcgwmbB015
Cla97C02G032470Watermelon (97103) v1wmwmbB021