Cla015973 (gene) Watermelon (97103) v1

Overview
NameCla015973
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 5669728 .. 5669964 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

mRNA sequence

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Coding sequence (CDS)

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Protein sequence

MKISPTLEMCMSELAKFRDRFGASSRRFLPKIRDEAATDRRQKSIQEATEQSRAIEDQKEVILSESTIFLLIDRFIVW
Homology
[Close]
BLAST of Cla015973 vs. TrEMBL
Match: A0A0A0K854_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-17
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

[Close]
BLAST of Cla015973 vs. NCBI nr
Match: gi|700188743|gb|KGN43976.1| (hypothetical protein Csa_7G075565 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.7e-17
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

The following BLAST results are available for this feature:
BLAST of Cla015973 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K854_CUCSA3.9e-1766.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075565 PE=4 SV=1[more]
BLAST of Cla015973 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188743|gb|KGN43976.1|5.7e-1766.67hypothetical protein Csa_7G075565 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU38597watermelon EST collection version 2.0transcribed_cluster
WMU53283watermelon EST collection version 2.0transcribed_cluster
WMU59520watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015973Cla015973.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU38597WMU38597transcribed_cluster
WMU59520WMU59520transcribed_cluster
WMU53283WMU53283transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 45..65
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015973Cla97C02G032470Watermelon (97103) v2wmwmbB317
Cla015973ClCG02G005480Watermelon (Charleston Gray)wcgwmB198
Cla015973CmoCh19G006510Cucurbita moschata (Rifu)cmowmB496
Cla015973Bhi05G001035Wax gourdwgowmB280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015973Silver-seed gourdcarwmB0198
Cla015973Silver-seed gourdcarwmB0812
Cla015973Silver-seed gourdcarwmB0895
Cla015973Cucumber (Chinese Long) v3cucwmB160
Cla015973Cucumber (Chinese Long) v3cucwmB164
Cla015973Cucumber (Chinese Long) v3cucwmB635
Cla015973Watermelon (97103) v2wmwmbB348
Cla015973Watermelon (97103) v2wmwmbB353
Cla015973Watermelon (97103) v1wmwmB072
Cla015973Cucumber (Gy14) v1cgywmB155
Cla015973Cucumber (Gy14) v1cgywmB427
Cla015973Cucumber (Gy14) v1cgywmB435
Cla015973Cucurbita maxima (Rimu)cmawmB127
Cla015973Cucurbita maxima (Rimu)cmawmB503
Cla015973Cucurbita maxima (Rimu)cmawmB586
Cla015973Cucurbita maxima (Rimu)cmawmB842
Cla015973Cucurbita moschata (Rifu)cmowmB109
Cla015973Cucurbita moschata (Rifu)cmowmB833
Cla015973Melon (DHL92) v3.5.1mewmB118
Cla015973Melon (DHL92) v3.5.1mewmB240
Cla015973Watermelon (Charleston Gray)wcgwmB162
Cla015973Watermelon (Charleston Gray)wcgwmB421
Cla015973Cucumber (Chinese Long) v2cuwmB149
Cla015973Cucumber (Chinese Long) v2cuwmB605
Cla015973Cucurbita pepo (Zucchini)cpewmB268
Cla015973Cucurbita pepo (Zucchini)cpewmB500
Cla015973Cucurbita pepo (Zucchini)cpewmB665
Cla015973Cucurbita pepo (Zucchini)cpewmB748
Cla015973Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015973Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015973Bottle gourd (USVL1VR-Ls)lsiwmB492
Cla015973Cucumber (Gy14) v2cgybwmB141
Cla015973Cucumber (Gy14) v2cgybwmB142
Cla015973Cucumber (Gy14) v2cgybwmB567
Cla015973Melon (DHL92) v3.6.1medwmB232
Cla015973Melon (DHL92) v3.6.1medwmB323
Cla015973Melon (DHL92) v3.6.1medwmB579