ClCG02G005480 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G005480
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 5985649 .. 5985885 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

mRNA sequence

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Coding sequence (CDS)

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Protein sequence

MKISPTLEMCMSELAKFRDRFGASSRRFLPKIRDEAATDRRQKSIQEATEQSRAIEDQKEVILSESTIFLLIDRFIVW
Homology
[Close]
BLAST of ClCG02G005480 vs. TrEMBL
Match: A0A0A0K854_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-17
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

[Close]
BLAST of ClCG02G005480 vs. NCBI nr
Match: gi|700188743|gb|KGN43976.1| (hypothetical protein Csa_7G075565 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.7e-17
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

The following BLAST results are available for this feature:
BLAST of ClCG02G005480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K854_CUCSA3.9e-1766.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075565 PE=4 SV=1[more]
BLAST of ClCG02G005480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188743|gb|KGN43976.1|5.7e-1766.67hypothetical protein Csa_7G075565 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G005480.1ClCG02G005480.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 45..65
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G005480Cla015973Watermelon (97103) v1wcgwmB198
ClCG02G005480Cla97C02G032470Watermelon (97103) v2wcgwmbB138
ClCG02G005480Bhi05G001035Wax gourdwcgwgoB275
ClCG02G005480CmoCh19G006510Cucurbita moschata (Rifu)cmowcgB459
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G005480Silver-seed gourdcarwcgB0203
ClCG02G005480Silver-seed gourdcarwcgB0786
ClCG02G005480Silver-seed gourdcarwcgB0868
ClCG02G005480Cucumber (Chinese Long) v3cucwcgB140
ClCG02G005480Cucumber (Chinese Long) v3cucwcgB572
ClCG02G005480Watermelon (97103) v2wcgwmbB171
ClCG02G005480Watermelon (Charleston Gray)wcgwcgB017
ClCG02G005480Watermelon (Charleston Gray)wcgwcgB086
ClCG02G005480Watermelon (Charleston Gray)wcgwcgB138
ClCG02G005480Cucumber (Gy14) v1cgywcgB156
ClCG02G005480Cucumber (Gy14) v1cgywcgB396
ClCG02G005480Cucumber (Gy14) v1cgywcgB405
ClCG02G005480Cucurbita maxima (Rimu)cmawcgB101
ClCG02G005480Cucurbita maxima (Rimu)cmawcgB460
ClCG02G005480Cucurbita maxima (Rimu)cmawcgB485
ClCG02G005480Cucurbita maxima (Rimu)cmawcgB531
ClCG02G005480Cucurbita maxima (Rimu)cmawcgB757
ClCG02G005480Cucurbita moschata (Rifu)cmowcgB088
ClCG02G005480Cucurbita moschata (Rifu)cmowcgB485
ClCG02G005480Cucurbita moschata (Rifu)cmowcgB759
ClCG02G005480Wild cucumber (PI 183967)cpiwcgB131
ClCG02G005480Wild cucumber (PI 183967)cpiwcgB136
ClCG02G005480Wild cucumber (PI 183967)cpiwcgB576
ClCG02G005480Cucumber (Chinese Long) v2cuwcgB127
ClCG02G005480Cucumber (Chinese Long) v2cuwcgB547
ClCG02G005480Melon (DHL92) v3.5.1mewcgB104
ClCG02G005480Melon (DHL92) v3.5.1mewcgB197
ClCG02G005480Melon (DHL92) v3.5.1mewcgB518
ClCG02G005480Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G005480Cucurbita pepo (Zucchini)cpewcgB267
ClCG02G005480Cucurbita pepo (Zucchini)cpewcgB428
ClCG02G005480Cucurbita pepo (Zucchini)cpewcgB590
ClCG02G005480Cucurbita pepo (Zucchini)cpewcgB662
ClCG02G005480Bottle gourd (USVL1VR-Ls)lsiwcgB057
ClCG02G005480Bottle gourd (USVL1VR-Ls)lsiwcgB097
ClCG02G005480Bottle gourd (USVL1VR-Ls)lsiwcgB428
ClCG02G005480Cucumber (Gy14) v2cgybwcgB122
ClCG02G005480Cucumber (Gy14) v2cgybwcgB125
ClCG02G005480Cucumber (Gy14) v2cgybwcgB507
ClCG02G005480Melon (DHL92) v3.6.1medwcgB192
ClCG02G005480Melon (DHL92) v3.6.1medwcgB272
ClCG02G005480Melon (DHL92) v3.6.1medwcgB513