Cla97C01G015000 (gene) Watermelon (97103) v2

Overview
NameCla97C01G015000
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptiontristetraprolin-like
LocationCla97Chr01 : 28766490 .. 28766726 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

mRNA sequence

ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Coding sequence (CDS)

ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Protein sequence

MDQKRYYRVVNNKNGNKRAEKSNNNSNYSSTWSPISDLKLQQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN
Homology
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BLAST of Cla97C01G015000 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_6G486965 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 32 WSPISDLKL-QQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN 79
          WSPISDLKL QQ+   +QDVQTQIDNVLHGPKT +RL VFKQICPDQN
Sbjct: 34 WSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN 81

[Close]
BLAST of Cla97C01G015000 vs. TrEMBL
Match: tr|A0A0A0KHZ5|A0A0A0KHZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 32 WSPISDLKL-QQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN 79
          WSPISDLKL QQ+   +QDVQTQIDNVLHGPKT +RL VFKQICPDQN
Sbjct: 34 WSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:
BLAST of Cla97C01G015000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48424.14.8e-1281.25hypothetical protein Csa_6G486965 [Cucumis sativus][more]
BLAST of Cla97C01G015000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHZ5|A0A0A0KHZ5_CUCSA3.2e-1281.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1[more]
BLAST of Cla97C01G015000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G015000 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G015000.1Cla97C01G015000.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G015000Cla008488Watermelon (97103) v1wmwmbB244
Cla97C01G015000MELO3C007471Melon (DHL92) v3.5.1mewmbB513
Cla97C01G015000ClCG01G016010Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G015000CSPI06G27160Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G015000Lsi01G010790Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G015000MELO3C007471.2Melon (DHL92) v3.6.1medwmbB505
Cla97C01G015000CsaV3_6G042290Cucumber (Chinese Long) v3cucwmbB430
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G015000Watermelon (97103) v2wmbwmbB008
Cla97C01G015000Silver-seed gourdcarwmbB0426
Cla97C01G015000Silver-seed gourdcarwmbB0839
Cla97C01G015000Cucumber (Gy14) v2cgybwmbB094
Cla97C01G015000Cucumber (Gy14) v2cgybwmbB394
Cla97C01G015000Cucumber (Gy14) v1cgywmbB127
Cla97C01G015000Cucumber (Gy14) v1cgywmbB441
Cla97C01G015000Cucurbita maxima (Rimu)cmawmbB561
Cla97C01G015000Cucurbita maxima (Rimu)cmawmbB603
Cla97C01G015000Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G015000Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G015000Watermelon (97103) v1wmwmbB310
Cla97C01G015000Cucurbita moschata (Rifu)cmowmbB579
Cla97C01G015000Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G015000Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G015000Wild cucumber (PI 183967)cpiwmbB102
Cla97C01G015000Cucumber (Chinese Long) v3cucwmbB104
Cla97C01G015000Cucumber (Chinese Long) v2cuwmbB100
Cla97C01G015000Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G015000Bottle gourd (USVL1VR-Ls)lsiwmbB037
Cla97C01G015000Melon (DHL92) v3.6.1medwmbB073
Cla97C01G015000Melon (DHL92) v3.5.1mewmbB077
Cla97C01G015000Watermelon (Charleston Gray)wcgwmbB130
Cla97C01G015000Wax gourdwgowmbB345
Cla97C01G015000Wax gourdwgowmbB399