ClCG01G016010 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G016010
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 30339370 .. 30340605 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTGTTATTATTATTATTTTTTGGCTTGATTATAAAGACTAGAATAAAAAATATATATATATATATTCTTTTATCGTGGGTGGCACTGTTCCCAGTCCTAATTAATCTTTAAGATTATGCTAATATCGCTCGAATGCTGGACAATCTCATCATGGTAGATAAAAGGAGGGTCATAGATTTATAATGAAATATAATTATATAGTGTTAAAAAAATTCGATGACTCGAAAAATTCAATTAATCCAACCTAACTCTTATGATTTAGATTGTGTTACATCAACTCCTTTTAAATTGAATTTGGTTCAAATAAATGAAAATATTATAGGTTGAGTTGATTAACTTCATCTTAATTAACTTATTATTACTTTTAAAATTATATTTTTTTACTTATGATGAAATTATTGATACATATATTTGTTTTAAGTTTTATTTAATTTCATGTCATTTGGATAATATTTTCTCCAACAACCCTTAAAAACAATTTTTTAGTACTTTAGAAAGAAAATTTTCACAATATAAATTGGAATTAAGTTGCTAATTCTAATTCAATATATGAAAATATTCTTTTTAGGACAAAAATTTAAATAAATGACTTGGGTAACCCAAACCAACTTAACTCAAATGTTTCATGGTTGGGTTGGGTTGGGTTCATTTTTTAATAAGGGTTATTTGGACTGAAAAAAATTACAAACTCGAACAATTGAGTTGGATCTAAAAAAGTCCTTCAACCCAACCCAATCTGCGAACACCCTTAACAACTATCTCTAATTATATGAGTTATTTTAGATATCAAAAGCATAACTAGGAAGACTTATGTTCAAAGTGAACAATATCATGTCATTGTAGAGACTATCTCCGTCGTCCCTAACAAAAAAAAAAAAAAATAGTGTGATATCTTAATTAATTGATAAAATGAATGCATTGATTGTTTTTAAAAGTTGTAACTTTTGTGTTTTTGTTTATGTGGTGATTATTGGCAGATATTGAAGGATATAATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

mRNA sequence

ATGGCTGCTATATTGAAGGATATAATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Coding sequence (CDS)

ATGGCTGCTATATTGAAGGATATAATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Protein sequence

MAAILKDIMDQKRYYRVVNNKNGNKRAEKSNNNSNYSSTWSPISDLKLQQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN
Homology
[Close]
BLAST of ClCG01G016010 vs. TrEMBL
Match: A0A0A0KHZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 9  MDQKRYYRVVNNKNG--NKRAEKSNNNSNYSSTWSPISDLKLQQ--VNGDNQDVQTQIDN 68
          MDQKRYYRVVNNKN   NK+ EK+NNN+N +S+WSPISDLKL Q   NGD QDVQTQIDN
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGD-QDVQTQIDN 60

Query: 69 VLHGPKTKSRLPVFKQICPDQN 87
          VLHGPKT +RL VFKQICPDQN
Sbjct: 61 VLHGPKTTARLLVFKQICPDQN 81

[Close]
BLAST of ClCG01G016010 vs. NCBI nr
Match: gi|700193220|gb|KGN48424.1| (hypothetical protein Csa_6G486965 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 9  MDQKRYYRVVNNKNG--NKRAEKSNNNSNYSSTWSPISDLKLQQ--VNGDNQDVQTQIDN 68
          MDQKRYYRVVNNKN   NK+ EK+NNN+N +S+WSPISDLKL Q   NGD QDVQTQIDN
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGD-QDVQTQIDN 60

Query: 69 VLHGPKTKSRLPVFKQICPDQN 87
          VLHGPKT +RL VFKQICPDQN
Sbjct: 61 VLHGPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:
BLAST of ClCG01G016010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHZ5_CUCSA1.1e-2578.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486965 PE=4 SV=1[more]
BLAST of ClCG01G016010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193220|gb|KGN48424.1|1.6e-2578.05hypothetical protein Csa_6G486965 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G016010.1ClCG01G016010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G016010MELO3C007471Melon (DHL92) v3.5.1mewcgB514
ClCG01G016010Cla008488Watermelon (97103) v1wcgwmB153
ClCG01G016010Cla97C01G015000Watermelon (97103) v2wcgwmbB089
ClCG01G016010CSPI06G27160Wild cucumber (PI 183967)cpiwcgB453
ClCG01G016010Lsi01G010790Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G016010MELO3C007471.2Melon (DHL92) v3.6.1medwcgB509
ClCG01G016010CsaV3_6G042290Cucumber (Chinese Long) v3cucwcgB455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G016010Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G016010Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G016010Cucurbita pepo (Zucchini)cpewcgB643
ClCG01G016010Cucumber (Gy14) v2cgybwcgB113
ClCG01G016010Cucumber (Gy14) v2cgybwcgB399
ClCG01G016010Melon (DHL92) v3.6.1medwcgB082
ClCG01G016010Silver-seed gourdcarwcgB0397
ClCG01G016010Silver-seed gourdcarwcgB0778
ClCG01G016010Cucumber (Chinese Long) v3cucwcgB131
ClCG01G016010Watermelon (97103) v2wcgwmbB100
ClCG01G016010Wax gourdwcgwgoB222
ClCG01G016010Wax gourdwcgwgoB225
ClCG01G016010Watermelon (Charleston Gray)wcgwcgB087
ClCG01G016010Cucumber (Gy14) v1cgywcgB134
ClCG01G016010Cucumber (Gy14) v1cgywcgB439
ClCG01G016010Cucurbita maxima (Rimu)cmawcgB754
ClCG01G016010Cucurbita maxima (Rimu)cmawcgB479
ClCG01G016010Cucurbita maxima (Rimu)cmawcgB521
ClCG01G016010Cucurbita maxima (Rimu)cmawcgB579
ClCG01G016010Cucurbita moschata (Rifu)cmowcgB755
ClCG01G016010Cucurbita moschata (Rifu)cmowcgB478
ClCG01G016010Cucurbita moschata (Rifu)cmowcgB519
ClCG01G016010Cucurbita moschata (Rifu)cmowcgB575
ClCG01G016010Wild cucumber (PI 183967)cpiwcgB123
ClCG01G016010Cucumber (Chinese Long) v2cuwcgB116
ClCG01G016010Cucumber (Chinese Long) v2cuwcgB432
ClCG01G016010Melon (DHL92) v3.5.1mewcgB084