Cla97C01G015000.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G015000.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	tristetraprolin-like
Location	Cla97Chr01 : 28766490 .. 28766726 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

mRNA sequence

ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Coding sequence (CDS)

ATGGATCAAAAGAGATACTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGAGCAGAAAAGAGCAATAATAATTCCAATTATTCATCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTAAATGGAGATAATCAAGATGTTCAAACACAGATCGACAATGTCCTCCATGGCCCCAAAACGAAAAGTCGTTTGCCAGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Protein sequence

MDQKRYYRVVNNKNGNKRAEKSNNNSNYSSTWSPISDLKLQQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN

Homology

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BLAST of Cla97C01G015000.1 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_6G486965 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 32 WSPISDLKL-QQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN 79
          WSPISDLKL QQ+   +QDVQTQIDNVLHGPKT +RL VFKQICPDQN
Sbjct: 34 WSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN 81

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BLAST of Cla97C01G015000.1 vs. TrEMBL
Match: tr|A0A0A0KHZ5|A0A0A0KHZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 32 WSPISDLKL-QQVNGDNQDVQTQIDNVLHGPKTKSRLPVFKQICPDQN 79
          WSPISDLKL QQ+   +QDVQTQIDNVLHGPKT +RL VFKQICPDQN
Sbjct: 34 WSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:

BLAST of Cla97C01G015000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48424.1	4.8e-12	81.25	hypothetical protein Csa_6G486965 [Cucumis sativus]	[more]

BLAST of Cla97C01G015000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHZ5\|A0A0A0KHZ5_CUCSA	3.2e-12	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1	[more]

BLAST of Cla97C01G015000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G015000.1 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G015000	Cla97C01G015000	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G015000.1.CDS.1	Cla97C01G015000.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G015000.1.exon.1	Cla97C01G015000.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G015000.1	Cla97C01G015000.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33