Cla97C01G000090 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G000090
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Arginine/serine-rich splicing factor, putative
Location	Cla97Chr01 : 58798 .. 63667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGGTATATGCCCTTAGTCTTAGCTATTTCTTGTCATCGTGTCTGTGCAAATTGTTATTTTCTCTTTTTATATTTTAAACGTGAAGGTATCATACAATAGTGGTGTTACGATGGTGATTTACAGCCATTCAAATTTATTTTAATTTTAGTTTTGAAAAGATCTACTACATGTATTTTCTGGATCATATCTAAGGTTTAATTTGTATGAACTTATGAAATTTATTTATACATGATTGATATTTTCTTGACAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGTTTTTGACCTTTAGTTTCTATATACTCTTAGCGGCATTTGCAAAGTAGTTGTTCATGAGATTATGTTCTTTCTTTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTATCGACCAAGTTTTCTTTTTCCTTTATTTCATGATTCCTGTTATTTTTGTTATATTCATATTTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGAATATGTATTATGCTACTATAAGGAACCATGATGCTGGCAAAATTTCGCACGTATAATATTCCGTTAGGTCCATATTAATTCAATGTGCTAATGAATGTTTAATTTCCCTCACAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGTGTTAGAATCTTTATTGTTCAATGAAAGATTAGGATTTTCTTTTATTGGATCATGTTGATGACTTTACTGGTATAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGTTAATTACATGTCCTTCACACTGTAAAAAAATGCTATTGTTTTTAGTTTCTGCAAAATGGTTTTACTCTGTAGGAATGATTTCTTAAGCCAATGTTGCTTATTTGTTTTGTCTTACAAATTCAACTCTTGTGATATGAGTTAGAATGTAAGATGTGCATCATCCATAATTCTTACTGCAAATATTTTGTTTATGCCTTAGTTCCTCACCGGCTAATGTGATGGAGGGGTCTTTGTAGTTGTATTTATCTTTGAAAAGTGGTTTAGTTTCTATTTAGGGTCTAAGAATCAGGCTTATGAAAATTTGGCATATCTCTGTTAGAGAAATGCGAATCAAACAATCTTGAAAATTATTATCTTTTGGGCAACAAGGCATTTGGATAGCTGAACTTTTCTCTACAGTTCCCATTGTCTCCACCAAAAGAGGAGGGCCAACCACAAAAAGGGCCTCAAATCCAAAAAAAAAAGTTTTAATTGGTAGTTGCGGAAACATTTTGCTGCCAAAGCCTACAAAGAGACTTGAAATGTAAAAAGAGATCAAATATTGGTTTGAGAATGCCCAAGCCCCCTAAAATTTCTATTCCTCTCCTCAAAAATCGATTCAAAATTGCATAAGCTAGACCACAACTCCAAAGCATATGATGAAGATCCGAAGATTCTTTGCGCTCCTACAAAGAATGCAACATGATGGCCCATTCAAATTGAGCACCTTCCTTACACCCAATCTAAAGTGTTAACTCTTCTGTGGATAACTTGTCGATCAGAAAACTTACCCTGATTGAGAATTTTCACCTTCTACATTGAGGTACAGTTGTAGACTGGAGGGAGAGAGGTTAACCGAATAGAGAAAAAATGATTTACATGAAAAATTGTTGGGTGGACTAGGAATCTAAATATGAACACCCCTTCTTTCTGGGGTACAACAAAACTCCCCAAGCAAATAACAAAGATTGATAATATCTTTTCCCTGTCTGACAAAAGAAAACCTGAAAGAGGGAAGGAGAGGTCATAGAATGAGGCAGAATGGTAGCTATGGAGTGATTCCTTGTCCCAAAAAAAAGTACCACTCCCATCCACTTTAGAAAAAATGGACGAGAAGAAAAAGGAAAGGAAAATAAAGGAAGCTTCTTAGCAATACCTTTCCAAGGATTTTATTTTGGATCTCGTGGGAATTCCCAACTGGTTGGCTTTTAGGGTCAACCTTTTTGGGTCGGCACACAATAATGATTTGCAGATTGGGTGAATCATGTGGTAAGATGTCCAACTATCCTGGGGGGAAAGGTCTTAGGGTAGCTTTATGTTATTGTTGCCTTGATCCCTCTTGTGGCTTCTCAACTAAGTCTACCTTCTTCAGTCTAACCAATGGGGCCTTGAAAAATTTGTTTCCTATGGTGGCTCCCATTTGGAAGCTTAAAATTCCAAAAAAGGGGAAGGTTTTCCTCTAGTCTCTTGCTTACAAAAGCTTAAATACTCATGATAAGCTCCAAAGGAAGTTTCGAAGCTGGTCCCTTTCTCCCTTCATTTGCTCTCTTTGTTTCGAGGAGGAGTCTCTAGACCATTTGTTTATTCATTGTGATTTTGCTATCAGACGTTGGAACAACTTATTCAATATTTTTGGTGTGATTGGCTATATGCCTAAGAAGGTTGATGATTGGCTGGTTGGAGGGCTTACTGGTTATGGTTTTGCTAGCTGAGGGATCTGTGGAGATGTGCTTACTCGTTCCCTTCTCCGGTGTCTTTGGAAAAAAACGAATAGTAGATTATTCCAAGACAAATATGCTTCTTTTGATTCTTTTTGGGCATGTGTTTAGCATACAAGTTTGGTGGTGCATAAATTGCACCAAATTCTTTTGTAATTACAGCATTATTAACATTAACAATTGGAAGATGCTCCTTCATTAGCTCTTTGTGGAGGAGTGCTCTCAACTCCTTGCCCTTAGGTTGTTTCCTTCTGTTCATTCTGAGTATATACCCTTTTCTTATATTAAGAAAAACCATAACGCATTCTCTTGCAACCTCGTATCATCCTTATATTTTGCTGTATGATGGTATTTTGGTGTTAACAACGTGTTATGTTGTGCCACTTTGATATTTGAAGAGGCAGGTTTTATTTTTATTTTTATTTTATATTTTATTATTATTATTAGTTTATAATCCAGGGGTGTATTATGAATATATATTTTTATAATGTTTAGCTTTGGCACGTGACATAGCACAGATGCAAATCATTTACACTGTACCAACTAGAAGCTGTCTATTTTCTTCTCTTTTTAAAAGTTCCATCAAACTCAGAAACTGAAATTACTTCAAATTTATATCATAATTACATATATATTTACTATTTGAAGTCAACATGTCCAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTGTAAGTTTTTCTAAAAGCACGTTTTGTCAGAAGTTCTGCATTATTTCAATTTGACAACTAATGTTTTTTTTTTTTTTTTGTTATTTAGATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTACCTTAACCTTTATTCTCTTGTCATGTTAGTTATTTCGAATTAGCCTACTGTTGTGATATTTTTCATTAACAGCTTTCCCTCTTTCTGTGAGCACTTCAGAAACTGGATTCAGTTTTTTGTGCCCCTTTGTGGATGACATATCACATATGGTTGCAGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGGTTCCAGCATTTCTGTTTTACTGTTATTACTCTCATGGTCTCTTATTTTACAATGTTGTAACGTTTTCTCGTACCATGCAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGTACTTTTGGCCTGTGAGCATGTGTGCGTTTTCCCCCAAGTTTCAATTTGCTTGACAAACTTTTTTCTGCGAAATATGCAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGTATGTGACTTCCAGTTTGAATGCTTCGAAAACTGTTTATTTCAGATGCATCCATTTATGCTCATGGTAAATAAAGTCATCTGATTGCCGGAGCTGCGTAAATTGGTAGTGGTATCAAAAAAGAGCAACCTTTGGATGAAGGGTGTAGAAGAGAGCGTGTTTGTTTTTGGGGGGGGGGGAATGGGTATGAGACTTTGACGATTATCTTCTGGTCACTGTTTTGTTCTTGGTAGCACAAGTATCCCGTCGCCCATGGGATTGATAGAAGCTAAGAAGCACTGCTACGACATGGATACGATGAAACGTCATTTCTTTTTAATATAGGATAGGACACAGTATGGACACATTTATTAAAGCATACACTTTCTTAAACACATGTCATTTTTATGCAAGAAAAAAAATAATCAAAGTGAATGAATTTATGTATTTATATTCTTAAAAAATGGTTTGATGTATTTTATATTCAATTTTTATCATTTTGTCATATGTTCATTTAGTGCATGCTGACAACTGTTTGATGCATTTTTAATACATGTATTTTGACTTTGTACAACTAGTGTATTAACACATCTATTGCACTCAATAGTTTGAATTAAGTGAGTAATGAAAATAATGCCACTAACCAGAGCTGAAATCCCTTTTTCAGGCACGAGAAGGAAGTGAATGA

mRNA sequence

ATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA

Coding sequence (CDS)

ATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE

Homology

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BLAST of Cla97C01G000090 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 203/207 (98.07%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA+R
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPTR 208
           KLDDTEF+NPWARAYIRVKKYDGSPTR
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSPTR 207

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BLAST of Cla97C01G000090 vs. NCBI nr
Match: XP_011654574.1 (PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654575.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654577.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654578.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654579.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654580.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654581.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654582.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >XP_011654583.1 PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus] >KGN49819.1 hypothetical protein Csa_5G138510 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 9.4e-95
Identity = 204/209 (97.61%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGP---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF 120
           AIRARDGYNFDGCRLRVELAHGGRGP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AMRKLDDTEFRNPWARAYIRVKKYDGSPT 207
           A+RKLDDTEFRNPWARAYIRVKKYDGSPT
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT 209

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BLAST of Cla97C01G000090 vs. NCBI nr
Match: XP_022922285.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922286.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922287.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922288.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922289.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922290.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022922291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIRARDGYNFDGCRLRVELAHGGRGP   XXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGP---XXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKYA+R
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPT 207
           KLDDTEFRNPWAR YIRVKKYDGSPT
Sbjct: 181 KLDDTEFRNPWARGYIRVKKYDGSPT 203

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BLAST of Cla97C01G000090 vs. NCBI nr
Match: XP_022974346.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIRARDGYNFDGCRLRVELAHGGRGP      XXXXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGP------XXXXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKYA+R
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPT 207
           KLDDTEFRNPWAR YIRVKKYDGSPT
Sbjct: 181 KLDDTEFRNPWARGYIRVKKYDGSPT 200

[Close]

BLAST of Cla97C01G000090 vs. NCBI nr
Match: XP_022974349.1 (serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 194/206 (94.17%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIRARDGYNFDGCRLRVELAHGGRGP        XXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGP--------XXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKYA+R
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPT 207
           KLDDTEFRNPWAR YIRVKKYDGSPT
Sbjct: 181 KLDDTEFRNPWARGYIRVKKYDGSPT 198

[Close]

BLAST of Cla97C01G000090 vs. TrEMBL
Match: tr|A0A0A0KLR9|A0A0A0KLR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 6.2e-95
Identity = 204/209 (97.61%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGP---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF 120
           AIRARDGYNFDGCRLRVELAHGGRGP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AMRKLDDTEFRNPWARAYIRVKKYDGSPT 207
           A+RKLDDTEFRNPWARAYIRVKKYDGSPT
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT 209

[Close]

BLAST of Cla97C01G000090 vs. TrEMBL
Match: tr|A0A2I4DUX3|A0A2I4DUX3_9ROSI (serine/arginine-rich splicing factor SR34A-like OS=Juglans regia OX=51240 GN=LOC108983680 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.2e-90
Identity = 187/207 (90.34%), Postives = 195/207 (94.20%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIR RDGYNFDGCRLRVELAHGGRGP    XXXXXXXXXXXXXXXXXXXXXXXXX FG+S
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDXXXXXXXXXXXXXXXXXXXXXXXXXXFGIS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SE+RV+VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYA+R
Sbjct: 121 RHSEFRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPTR 208
           KLDDTEFRNPWAR YIRVKKY+GSP R
Sbjct: 181 KLDDTEFRNPWARGYIRVKKYEGSPIR 207

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BLAST of Cla97C01G000090 vs. TrEMBL
Match: tr|A0A2P4IEA7|A0A2P4IEA7_QUESU (Isoform 2 of serine/arginine-rich splicing factor sr34a OS=Quercus suber OX=58331 GN=CFP56_52688 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 7.9e-90
Identity = 185/207 (89.37%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDI+E+E+EDLF+KYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 29  MSGRFSRTIYVGNLPSDIREWEVEDLFHKYGRILDIELKIPPRPPCYCFVEFDNARDAED 88

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI+ RDGYNFDGCRLRVELAHGGRGP    XXXXXXXXXXXXXXXXXXXXXXXXXRFG+S
Sbjct: 89  AIKGRDGYNFDGCRLRVELAHGGRGP---SXXXXXXXXXXXXXXXXXXXXXXXXXRFGIS 148

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SEYRV+VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD EGTFG+VDYTNYDDMKYA+R
Sbjct: 149 RHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGVVDYTNYDDMKYAIR 208

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPTR 208
           KLDDTEFRNPWARAYIRVKKY+GSP R
Sbjct: 209 KLDDTEFRNPWARAYIRVKKYEGSPPR 232

[Close]

BLAST of Cla97C01G000090 vs. TrEMBL
Match: tr|A0A2P4M3K9|A0A2P4M3K9_QUESU (Isoform 2 of serine/arginine-rich splicing factor sr34a OS=Quercus suber OX=58331 GN=CFP56_41589 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 7.9e-90
Identity = 185/207 (89.37%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDI+E+E+EDLF+KYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 69  MSGRFSRTIYVGNLPSDIREWEVEDLFHKYGRILDIELKIPPRPPCYCFVEFDNARDAED 128

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI+ RDGYNFDGCRLRVELAHGGRGP    XXXXXXXXXXXXXXXXXXXXXXXXXRFG+S
Sbjct: 129 AIKGRDGYNFDGCRLRVELAHGGRGP---SXXXXXXXXXXXXXXXXXXXXXXXXXRFGIS 188

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SEYRV+VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD EGTFG+VDYTNYDDMKYA+R
Sbjct: 189 RHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGVVDYTNYDDMKYAIR 248

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSPTR 208
           KLDDTEFRNPWARAYIRVKKY+GSP R
Sbjct: 249 KLDDTEFRNPWARAYIRVKKYEGSPPR 272

[Close]

BLAST of Cla97C01G000090 vs. TrEMBL
Match: tr|A0A061G2B7|A0A061G2B7_THECC (SER/ARG-rich protein 34A OS=Theobroma cacao OX=3641 GN=TCM_015504 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.1e-88
Identity = 160/205 (78.05%), Postives = 170/205 (82.93%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS  FSRTIYVGNLPSDIKE+E+EDLFYKYGRILDIELKIPPRPPCYCFVEFEN RDAED
Sbjct: 1   MSGHFSRTIYVGNLPSDIKEWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AIR RDGYNFDGCRLRVELAHGGRG                              +FG+S
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRG---------------QSSSDRRGGYDGGKAKFGIS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE+SRDS+GTFGIVDYTNYDDMKYA+R
Sbjct: 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDMKYAVR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYDGSP 206
           KLDDTEFRNPWARAYIRVK+Y+GSP
Sbjct: 181 KLDDTEFRNPWARAYIRVKRYEGSP 190

[Close]

BLAST of Cla97C01G000090 vs. Swiss-Prot
Match: sp|A2RVS6|SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.8e-85
Identity = 174/202 (86.14%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI+ RDGYN DGCRLRVELAHGGRG    XXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRG---QXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+R
Sbjct: 121 RHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLDDTEFRNPWAR +IRVKKY+
Sbjct: 181 KLDDTEFRNPWARGFIRVKKYE 199

[Close]

BLAST of Cla97C01G000090 vs. Swiss-Prot
Match: sp|Q9XFR5|SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.3e-67
Identity = 125/202 (61.88%), Postives = 149/202 (73.76%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDGCRLRVE+AHGGR                                   S
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR----------------RFSPSVDRYSSSYSASRAPS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           +RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDMKYA+R
Sbjct: 121 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLD TEFRN ++ AYIRV++Y+
Sbjct: 181 KLDATEFRNAFSSAYIRVREYE 186

[Close]

BLAST of Cla97C01G000090 vs. Swiss-Prot
Match: sp|O22315|SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.6e-64
Identity = 134/202 (66.34%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDG RLRVELAHGGR                XXXXXXXXXXXXXXX     
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR------RSSDDTRGSFXXXXXXXXXXXXXXXXXXXX 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
             SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA++
Sbjct: 121 XXSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLDDTEFRN ++  Y+RV++YD
Sbjct: 181 KLDDTEFRNAFSNGYVRVREYD 196

[Close]

BLAST of Cla97C01G000090 vs. Swiss-Prot
Match: sp|F4JHI7|SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.8e-63
Identity = 135/202 (66.83%), Postives = 155/202 (76.73%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDG  LRVELAHGGR                  XXXXXXXXXXXXX    S
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-----RSSHDARGSYSGRXXXXXXXXXXXXXXXXXS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           +RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKYA  
Sbjct: 121 RRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA-- 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
            LDDTEFRN ++  Y+RV++YD
Sbjct: 181 -LDDTEFRNAFSHEYVRVREYD 194

[Close]

BLAST of Cla97C01G000090 vs. Swiss-Prot
Match: sp|Q9NEW6|RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 4.2e-46
Identity = 118/199 (59.30%), Postives = 147/199 (73.87%), Query Frame = 0


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGY 68
           +YVGNLP D++E E+ED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+RARDGY
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGY 70

Query: 69  NFDGCRLRVELAH--GGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVSKRSEYR 128
            FDG R+RVE     G RGP           XXXXXXXXXXXXXXXXX R     R+ YR
Sbjct: 71  EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHXXXXXXXXXXXXXXXXXQR-----RTGYR 130

Query: 129 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTE 188
           VIV GLP + SWQDLKDHMR AGDVC+A+V+RD  GT G+V++T Y+D+KYA+RKLDDT+
Sbjct: 131 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTK 190

Query: 189 FR-NPWARAYIRVKKYDGS 205
           FR +    AYIRV++ + S
Sbjct: 191 FRSHEGETAYIRVREDNSS 200

[Close]

BLAST of Cla97C01G000090 vs. TAIR10
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 315.1 bits (806), Expect = 4.3e-86
Identity = 174/202 (86.14%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI+ RDGYN DGCRLRVELAHGGRG    XXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRG---QXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           + SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKYA+R
Sbjct: 121 RHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLDDTEFRNPWAR +IRVKKY+
Sbjct: 181 KLDDTEFRNPWARGFIRVKKYE 199

[Close]

BLAST of Cla97C01G000090 vs. TAIR10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-68
Identity = 125/202 (61.88%), Postives = 149/202 (73.76%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDGCRLRVE+AHGGR                                   S
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR----------------RFSPSVDRYSSSYSASRAPS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           +RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDMKYA+R
Sbjct: 121 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIR 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLD TEFRN ++ AYIRV++Y+
Sbjct: 181 KLDATEFRNAFSSAYIRVREYE 186

[Close]

BLAST of Cla97C01G000090 vs. TAIR10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-65
Identity = 134/202 (66.34%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDG RLRVELAHGGR                XXXXXXXXXXXXXXX     
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR------RSSDDTRGSFXXXXXXXXXXXXXXXXXXXX 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
             SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKYA++
Sbjct: 121 XXSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
           KLDDTEFRN ++  Y+RV++YD
Sbjct: 181 KLDDTEFRNAFSNGYVRVREYD 196

[Close]

BLAST of Cla97C01G000090 vs. TAIR10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-64
Identity = 135/202 (66.83%), Postives = 155/202 (76.73%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVS 120
           AI  RDGY+FDG  LRVELAHGGR                  XXXXXXXXXXXXX    S
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-----RSSHDARGSYSGRXXXXXXXXXXXXXXXXXS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMR 180
           +RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKYA  
Sbjct: 121 RRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA-- 180

Query: 181 KLDDTEFRNPWARAYIRVKKYD 203
            LDDTEFRN ++  Y+RV++YD
Sbjct: 181 -LDDTEFRNAFSHEYVRVREYD 194

[Close]

BLAST of Cla97C01G000090 vs. TAIR10
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 4  RFSRT-IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAI 63
          R+  T +YVG L S  +  ++E LF +YGR+ D+++K       Y FVEF + RDA+DA 
Sbjct: 7  RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDAR 66

Query: 64 RARDGYNFDGCRLRVELAHG 83
             DG +FDG R+ VE + G
Sbjct: 67 HYLDGRDFDGSRITVEFSRG 81

The following BLAST results are available for this feature:

BLAST of Cla97C01G000090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137780.1	2.9e-96	98.07	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_011654574.1	9.4e-95	97.61	PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativu...	[more]
XP_022922285.1	1.6e-94	96.60	serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229222...	[more]
XP_022974346.1	1.6e-94	95.15	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita maxima]	[more]
XP_022974349.1	1.6e-94	94.17	serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima]	[more]

BLAST of Cla97C01G000090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLR9\|A0A0A0KLR9_CUCSA	6.2e-95	97.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
tr\|A0A2I4DUX3\|A0A2I4DUX3_9ROSI	1.2e-90	90.34	serine/arginine-rich splicing factor SR34A-like OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2P4IEA7\|A0A2P4IEA7_QUESU	7.9e-90	89.37	Isoform 2 of serine/arginine-rich splicing factor sr34a OS=Quercus suber OX=5833...	[more]
tr\|A0A2P4M3K9\|A0A2P4M3K9_QUESU	7.9e-90	89.37	Isoform 2 of serine/arginine-rich splicing factor sr34a OS=Quercus suber OX=5833...	[more]
tr\|A0A061G2B7\|A0A061G2B7_THECC	1.1e-88	78.05	SER/ARG-rich protein 34A OS=Theobroma cacao OX=3641 GN=TCM_015504 PE=3 SV=1	[more]

BLAST of Cla97C01G000090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2RVS6\|SR34A_ARATH	7.8e-85	86.14	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
sp\|Q9XFR5\|SR30_ARATH	4.3e-67	61.88	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
sp\|O22315\|SR34_ARATH	2.6e-64	66.34	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
sp\|F4JHI7\|SR34B_ARATH	3.8e-63	66.83	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
sp\|Q9NEW6\|RSP3_CAEEL	4.2e-46	59.30	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of Cla97C01G000090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49430.1	4.3e-86	86.14	SER/ARG-rich protein 34A	[more]
AT1G09140.1	2.4e-68	61.88	SERINE-ARGININE PROTEIN 30	[more]
AT1G02840.1	1.5e-65	66.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02430.2	2.1e-64	66.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37340.1	4.6e-11	42.50	arginine/serine-rich zinc knuckle-containing protein 33	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G000090.1	Cla97C01G000090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 126..195 e-value: 1.5E-7 score: 41.0 coord: 8..78 e-value: 2.0E-22 score: 90.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 127..189 e-value: 1.0E-11 score: 44.3 coord: 9..76 e-value: 1.3E-18 score: 66.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.62
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 125..203 score: 10.138
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..117 e-value: 2.2E-25 score: 91.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 124..202 e-value: 9.7E-24 score: 85.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..276
None	No IPR available	PANTHER	PTHR43933	FAMILY NOT NAMED	coord: 1..269
None	No IPR available	PANTHER	PTHR43933:SF5	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 1..269
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 2.83321E-41 score: 137.976
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 125..200 e-value: 1.449E-41 score: 138.794
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 122..195 coord: 6..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G000090	Cla000302	Watermelon (97103) v1	wmwmbB000
Cla97C01G000090	Csa5G138510	Cucumber (Chinese Long) v2	cuwmbB346
Cla97C01G000090	ClCG01G000100	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G000090	CSPI05G02740	Wild cucumber (PI 183967)	cpiwmbB360
Cla97C01G000090	CmoCh02G011810	Cucurbita moschata (Rifu)	cmowmbB580
Cla97C01G000090	CmoCh15G010560	Cucurbita moschata (Rifu)	cmowmbB266
Cla97C01G000090	MELO3C033837.2	Melon (DHL92) v3.6.1	medwmbB003
Cla97C01G000090	Carg13991	Silver-seed gourd	carwmbB0529
Cla97C01G000090	CsaV3_5G000070	Cucumber (Chinese Long) v3	cucwmbB362
Cla97C01G000090	Bhi12G000601	Wax gourd	wgowmbB062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G000090	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G000090	Cucumber (Gy14) v1	cgywmbB377
Cla97C01G000090	Cucumber (Gy14) v1	cgywmbB379
Cla97C01G000090	Cucurbita maxima (Rimu)	cmawmbB247
Cla97C01G000090	Cucurbita maxima (Rimu)	cmawmbB284
Cla97C01G000090	Cucurbita maxima (Rimu)	cmawmbB604
Cla97C01G000090	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G000090	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G000090	Bottle gourd (USVL1VR-Ls)	lsiwmbB000
Cla97C01G000090	Melon (DHL92) v3.5.1	mewmbB005
Cla97C01G000090	Melon (DHL92) v3.5.1	mewmbB008